Wall clock time and date at job start Tue Mar 31 2020 19:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86795 * 120.00026 * 2 1 4 4 H 1.48496 * 109.47051 * 239.99879 * 3 2 1 5 5 H 1.48504 * 109.46913 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47376 * 119.99568 * 3 2 1 7 7 C 1.38953 * 120.00002 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99852 * 180.02562 * 7 2 1 9 9 N 1.37104 * 119.99798 * 0.02562 * 7 2 1 10 10 C 1.34772 * 119.99472 * 180.02562 * 9 7 2 11 11 O 1.21295 * 120.00575 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99767 * 179.97438 * 10 9 7 13 13 S 1.81000 * 109.47372 * 179.97438 * 12 10 9 14 14 C 1.76194 * 100.00051 * 180.02562 * 13 12 10 15 15 N 1.31276 * 125.82451 * 359.95873 * 14 13 12 16 16 C 1.34378 * 109.35891 * 180.02562 * 15 14 13 17 17 C 1.34391 * 108.40526 * 359.97438 * 16 15 14 18 18 N 1.36395 * 125.81974 * 180.02562 * 14 13 12 19 19 C 1.40198 * 126.53400 * 359.69997 * 18 14 13 20 20 C 1.38857 * 120.05738 * 309.72389 * 19 18 14 21 21 C 1.38110 * 119.96000 * 179.74872 * 20 19 18 22 22 C 1.38278 * 120.07808 * 0.53061 * 21 20 19 23 23 C 1.38382 * 120.11646 * 359.73964 * 22 21 20 24 24 Cl 1.73597 * 119.97951 * 180.02562 * 23 22 21 25 25 C 1.38261 * 120.03786 * 359.97438 * 23 22 21 26 26 H 0.97003 * 120.00071 * 0.02562 * 1 2 3 27 27 H 0.96999 * 120.00014 * 359.97438 * 9 7 2 28 28 H 1.09001 * 109.46922 * 60.00037 * 12 10 9 29 29 H 1.08991 * 109.46966 * 299.99983 * 12 10 9 30 30 H 1.07996 * 125.79379 * 179.97438 * 16 15 14 31 31 H 1.08004 * 126.52260 * 180.02562 * 17 16 15 32 32 H 1.08005 * 120.01952 * 0.02562 * 20 19 18 33 33 H 1.07994 * 119.96332 * 180.24754 * 21 20 19 34 34 H 1.07997 * 119.94433 * 179.72573 * 22 21 20 35 35 H 1.07999 * 120.03683 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6963 -1.2125 5 1 1.2830 2.7464 -0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2033 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5578 0.0016 11 8 3.2102 -3.5579 0.0021 12 6 1.2437 -4.8630 0.0022 13 16 2.4199 -6.2387 0.0028 14 6 1.2998 -7.5989 0.0026 15 7 -0.0103 -7.5153 0.0029 16 6 -0.5355 -8.7522 0.0032 17 6 0.4724 -9.6412 0.0025 18 7 1.6461 -8.9181 0.0034 19 6 2.9476 -9.4394 -0.0013 20 6 3.8747 -8.9865 -0.9306 21 6 5.1578 -9.4977 -0.9302 22 6 5.5170 -10.4677 -0.0125 23 6 4.5940 -10.9253 0.9114 24 17 5.0490 -12.1427 2.0622 25 6 3.3100 -10.4127 0.9191 26 1 -0.4850 0.8401 -0.0004 27 1 0.3533 -2.3907 0.0005 28 1 0.6174 -4.9213 -0.8880 29 1 0.6168 -4.9201 0.8919 30 1 -1.5887 -8.9913 0.0039 31 1 0.3804 -10.7173 0.0022 32 1 3.5940 -8.2319 -1.6504 33 1 5.8800 -9.1426 -1.6503 34 1 6.5196 -10.8690 -0.0170 35 1 2.5895 -10.7702 1.6399 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339923981.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:45 Heat of formation + Delta-G solvation = 33.135815 kcal Electronic energy + Delta-G solvation = -22508.226483 eV Core-core repulsion = 18851.860899 eV Total energy + Delta-G solvation = -3656.365584 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 337.039 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.17522 -40.28809 -40.15051 -37.61895 -36.09822 -35.13939 -33.44055 -32.09736 -31.30849 -30.62214 -30.19889 -26.69621 -24.73272 -24.15680 -22.62607 -22.19223 -21.32936 -20.15542 -19.78891 -17.89626 -17.64385 -17.22031 -17.09779 -16.51106 -16.32778 -16.22379 -15.83582 -15.77082 -15.19081 -14.99358 -14.80370 -14.59767 -14.46697 -14.21152 -13.81536 -13.47815 -13.01869 -12.91861 -12.86111 -12.67687 -12.47865 -12.12657 -12.05668 -11.69983 -11.57343 -11.44450 -11.22125 -10.62105 -10.50709 -10.11464 -10.06768 -9.78277 -8.51675 -8.48911 -6.02268 -0.30446 -0.04912 0.08624 0.80263 0.97036 1.05203 1.37662 1.42690 1.54124 1.72655 1.87702 1.93464 2.28023 2.36749 3.03147 3.14238 3.61949 3.68211 3.83597 3.91224 4.09743 4.11369 4.16061 4.20308 4.38664 4.40270 4.49358 4.59863 4.79848 4.98796 5.14221 5.20700 5.37077 5.42314 5.61095 5.88557 5.97576 6.45482 6.74686 7.01566 7.40104 7.92079 8.65152 Molecular weight = 337.04amu Principal moments of inertia in cm(-1) A = 0.018742 B = 0.002437 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.641840 B =11484.948619 C =12492.788943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.010 4.010 3 Si 0.998 3.002 4 H -0.269 1.269 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.338 4.338 8 H 0.086 0.914 9 N -0.555 5.555 10 C 0.452 3.548 11 O -0.617 6.617 12 C -0.110 4.110 13 S 0.050 5.950 14 C 0.166 3.834 15 N -0.512 5.512 16 C -0.030 4.030 17 C -0.033 4.033 18 N -0.403 5.403 19 C 0.110 3.890 20 C -0.118 4.118 21 C -0.080 4.080 22 C -0.097 4.097 23 C -0.027 4.027 24 Cl -0.053 7.053 25 C -0.106 4.106 26 H 0.281 0.719 27 H 0.399 0.601 28 H 0.119 0.881 29 H 0.116 0.884 30 H 0.202 0.798 31 H 0.217 0.783 32 H 0.132 0.868 33 H 0.172 0.828 34 H 0.168 0.832 35 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.074 -25.615 -0.515 26.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.211 4.211 3 Si 0.821 3.179 4 H -0.194 1.194 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.467 4.467 8 H 0.104 0.896 9 N -0.191 5.191 10 C 0.237 3.763 11 O -0.505 6.505 12 C -0.262 4.262 13 S 0.279 5.721 14 C -0.203 4.203 15 N -0.234 5.234 16 C -0.178 4.178 17 C -0.165 4.165 18 N -0.086 5.086 19 C 0.019 3.981 20 C -0.138 4.138 21 C -0.099 4.099 22 C -0.115 4.115 23 C -0.055 4.055 24 Cl -0.024 7.024 25 C -0.126 4.126 26 H 0.090 0.910 27 H 0.233 0.767 28 H 0.137 0.863 29 H 0.134 0.866 30 H 0.219 0.781 31 H 0.234 0.766 32 H 0.150 0.850 33 H 0.189 0.811 34 H 0.185 0.815 35 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 6.546 -24.816 -0.402 25.668 hybrid contribution -1.589 0.106 0.179 1.602 sum 4.957 -24.710 -0.223 25.203 Atomic orbital electron populations 1.69679 1.07026 1.29767 1.49090 1.26152 0.96566 1.02683 0.95651 0.84918 0.77745 0.76100 0.79178 1.19374 1.19457 1.19462 1.19723 0.92983 0.83416 1.50616 0.89567 1.41799 1.09543 1.04362 1.63404 1.19636 0.87683 0.84958 0.83985 1.90521 1.14905 1.87372 1.57723 1.23333 1.01101 0.93191 1.08558 1.86037 1.03029 0.89939 1.93078 1.25764 0.95510 0.88839 1.10156 1.70827 1.04174 1.26961 1.21467 1.22910 1.01151 0.87127 1.06590 1.23531 0.82726 1.00301 1.09925 1.43064 1.05505 1.04792 1.55247 1.17706 0.83384 0.98670 0.98356 1.21455 0.94340 1.00423 0.97536 1.21374 0.94998 0.94791 0.98720 1.21562 1.00551 0.96276 0.93123 1.20770 0.94250 0.95323 0.95121 1.98397 1.92306 1.53207 1.58532 1.20917 0.96402 0.97168 0.98157 0.90990 0.76681 0.86314 0.86562 0.78078 0.76613 0.84974 0.81100 0.81479 0.83521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.33 13.05 21.66 0.28 -49.05 16 2 C -0.01 -0.52 5.50 84.93 0.47 -0.05 16 3 Si 1.00 42.30 29.55 68.60 2.03 44.32 16 4 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 5 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 6 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 7 C -0.34 -19.08 9.68 84.04 0.81 -18.26 16 8 H 0.09 5.11 7.16 -2.92 -0.02 5.09 16 9 N -0.56 -28.96 5.29 -306.98 -1.62 -30.58 16 10 C 0.45 22.08 7.80 87.66 0.68 22.76 16 11 O -0.62 -34.03 15.44 -3.08 -0.05 -34.08 16 12 C -0.11 -4.26 5.68 71.24 0.40 -3.85 16 13 S 0.05 1.76 19.80 -56.49 -1.12 0.64 16 14 C 0.17 5.24 7.81 179.60 1.40 6.64 16 15 N -0.51 -16.35 10.60 -196.24 -2.08 -18.43 16 16 C -0.03 -0.71 11.84 83.42 0.99 0.28 16 17 C -0.03 -0.67 11.32 82.87 0.94 0.27 16 18 N -0.40 -10.23 2.91 -346.09 -1.01 -11.24 16 19 C 0.11 2.41 5.85 38.08 0.22 2.64 16 20 C -0.12 -2.41 8.87 22.39 0.20 -2.21 16 21 C -0.08 -1.16 10.04 22.25 0.22 -0.94 16 22 C -0.10 -1.26 9.83 22.31 0.22 -1.04 16 23 C -0.03 -0.43 6.32 22.31 0.14 -0.29 16 24 Cl -0.05 -0.77 28.95 -2.72 -0.08 -0.85 16 25 C -0.11 -1.93 9.49 22.40 0.21 -1.71 16 26 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 27 H 0.40 19.93 7.90 -92.71 -0.73 19.20 16 28 H 0.12 4.32 8.14 -2.40 -0.02 4.30 16 29 H 0.12 4.28 8.14 -2.40 -0.02 4.26 16 30 H 0.20 3.41 8.06 -2.91 -0.02 3.39 16 31 H 0.22 2.47 8.06 -2.91 -0.02 2.45 16 32 H 0.13 2.98 7.59 -2.91 -0.02 2.96 16 33 H 0.17 1.54 8.06 -2.91 -0.02 1.51 16 34 H 0.17 1.28 8.06 -2.91 -0.02 1.25 16 35 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -69.73 344.47 3.69 -66.04 By element: Atomic # 1 Polarization: 28.56 SS G_CDS: 0.42 Total: 28.98 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: 6.92 Total: 4.24 kcal Atomic # 7 Polarization: -104.87 SS G_CDS: -4.43 Total: -109.30 kcal Atomic # 8 Polarization: -34.03 SS G_CDS: -0.05 Total: -34.08 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.32 kcal Atomic # 16 Polarization: 1.76 SS G_CDS: -1.12 Total: 0.64 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -0.08 Total: -0.85 kcal Total: -69.73 3.69 -66.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339923981.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.178 kcal (2) G-P(sol) polarization free energy of solvation -69.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds