Wall clock time and date at job start Tue Mar 31 2020 20:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31421 * 1 3 3 Si 1.86798 * 119.99906 * 2 1 4 4 H 1.48496 * 109.46980 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47227 * 299.99907 * 3 2 1 6 6 H 1.48503 * 109.47322 * 60.00313 * 3 2 1 7 7 C 1.38951 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99537 * 179.97438 * 7 2 1 9 9 N 1.37099 * 119.99960 * 359.97438 * 7 2 1 10 10 C 1.34773 * 119.99694 * 179.97438 * 9 7 2 11 11 O 1.21292 * 120.00105 * 0.02562 * 10 9 7 12 12 C 1.50704 * 120.00156 * 180.02562 * 10 9 7 13 13 N 1.46491 * 109.47374 * 180.02562 * 12 10 9 14 14 C 1.34778 * 120.00033 * 180.02562 * 13 12 10 15 15 O 1.21584 * 120.00167 * 359.97438 * 14 13 12 16 16 C 1.47609 * 119.99807 * 179.97438 * 14 13 12 17 17 C 1.39763 * 120.07996 * 179.97438 * 16 14 13 18 18 C 1.38082 * 119.90540 * 180.02562 * 17 16 14 19 19 C 1.39586 * 119.98066 * 359.97438 * 18 17 16 20 20 C 1.38820 * 120.05374 * 359.97438 * 19 18 17 21 21 N 1.48015 * 119.88734 * 179.97438 * 20 19 18 22 22 O 1.21801 * 120.00163 * 179.97438 * 21 20 19 23 23 O 1.21801 * 119.99992 * 359.97438 * 21 20 19 24 24 C 1.37798 * 120.21982 * 0.02562 * 20 19 18 25 25 O 1.36359 * 108.58438 * 179.97438 * 19 18 17 26 26 C 1.43963 * 105.53404 * 17.35018 * 25 19 18 27 27 O 1.36545 * 131.43595 * 179.97438 * 18 17 16 28 28 H 0.97002 * 119.99493 * 359.97438 * 1 2 3 29 29 H 0.96999 * 120.00213 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.46866 * 59.99897 * 12 10 9 31 31 H 1.09001 * 109.47040 * 300.00769 * 12 10 9 32 32 H 0.97001 * 120.00145 * 359.97438 * 13 12 10 33 33 H 1.08003 * 120.04563 * 0.03401 * 17 16 14 34 34 H 1.08003 * 119.99505 * 179.97438 * 24 20 19 35 35 H 1.09007 * 110.56253 * 214.18793 * 26 25 19 36 36 H 1.08997 * 110.56478 * 91.33755 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8895 2.3965 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3907 -0.0005 10 6 1.9972 -3.5578 -0.0016 11 8 3.2102 -3.5578 -0.0021 12 6 1.2438 -4.8630 -0.0022 13 7 2.1957 -5.9764 -0.0027 14 6 1.7464 -7.2471 -0.0038 15 8 0.5511 -7.4693 -0.0039 16 6 2.7057 -8.3691 -0.0048 17 6 2.2417 -9.6874 -0.0054 18 6 3.1422 -10.7342 -0.0059 19 6 4.5137 -10.4744 -0.0063 20 6 4.9732 -9.1645 -0.0068 21 7 6.4283 -8.8933 -0.0067 22 8 6.8337 -7.7447 -0.0076 23 8 7.2202 -9.8187 -0.0057 24 6 4.0791 -8.1159 -0.0063 25 8 5.1812 -11.6635 -0.0061 26 6 4.2153 -12.6479 -0.4192 27 8 2.9555 -12.0868 -0.0060 28 1 -0.4849 0.8401 0.0004 29 1 0.3534 -2.3907 -0.0005 30 1 0.6168 -4.9201 -0.8920 31 1 0.6173 -4.9213 0.8880 32 1 3.1494 -5.7992 -0.0030 33 1 1.1803 -9.8871 -0.0056 34 1 4.4406 -7.0982 -0.0063 35 1 4.3959 -13.5969 0.0858 36 1 4.2401 -12.7780 -1.5011 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343516584.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:11 Heat of formation + Delta-G solvation = -96.215424 kcal Electronic energy + Delta-G solvation = -27871.955673 eV Core-core repulsion = 23326.518963 eV Total energy + Delta-G solvation = -4545.436710 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.088 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.25511 -42.17140 -40.33804 -38.53457 -37.82688 -37.21373 -36.68442 -34.75538 -33.90432 -32.30713 -31.53014 -31.20188 -28.04518 -26.91058 -26.57871 -24.99977 -24.20186 -23.11119 -21.25612 -20.03798 -19.57283 -19.20386 -18.71175 -18.32218 -18.17698 -17.75045 -17.52772 -17.35681 -16.40344 -15.99584 -15.60072 -15.45531 -15.14078 -14.83844 -14.58003 -14.22467 -14.12364 -13.92332 -13.79796 -13.56281 -13.49312 -12.74760 -12.31397 -12.17227 -11.75262 -11.73503 -11.68687 -11.43837 -11.29139 -11.18357 -10.44496 -10.41311 -10.30587 -10.11063 -9.71027 -9.20340 -8.98576 -8.73889 -8.17155 -6.57679 -3.99789 -0.64483 -0.12271 0.86236 0.96941 1.70985 2.14213 2.41210 2.96347 3.04257 3.07349 3.20553 3.27522 3.39180 3.64814 3.78031 3.94367 4.04036 4.07933 4.17553 4.28715 4.50410 4.66290 4.73174 4.80864 5.06805 5.10600 5.26316 5.31661 5.72510 5.78751 5.92431 5.93521 6.15694 6.32742 7.38671 7.39673 7.41310 7.83712 7.99526 8.36981 8.98384 9.31204 9.78211 10.58997 Molecular weight = 337.09amu Principal moments of inertia in cm(-1) A = 0.019799 B = 0.002390 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.848095 B =11714.183290 C =13099.885405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.026 3.974 3 Si 0.933 3.067 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.305 4.305 8 H 0.108 0.892 9 N -0.546 5.546 10 C 0.424 3.576 11 O -0.595 6.595 12 C 0.108 3.892 13 N -0.695 5.695 14 C 0.563 3.437 15 O -0.531 6.531 16 C -0.112 4.112 17 C 0.004 3.996 18 C 0.029 3.971 19 C 0.122 3.878 20 C -0.033 4.033 21 N 0.029 4.971 22 O -0.144 6.144 23 O -0.145 6.145 24 C -0.017 4.017 25 O -0.275 6.275 26 C 0.207 3.793 27 O -0.292 6.292 28 H 0.274 0.726 29 H 0.396 0.604 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.412 0.588 33 H 0.171 0.829 34 H 0.177 0.823 35 H 0.147 0.853 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.746 -23.402 -1.153 23.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.177 4.177 3 Si 0.759 3.241 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.434 4.434 8 H 0.125 0.875 9 N -0.180 5.180 10 C 0.209 3.791 11 O -0.482 6.482 12 C -0.019 4.019 13 N -0.349 5.349 14 C 0.348 3.652 15 O -0.409 6.409 16 C -0.116 4.116 17 C -0.016 4.016 18 C -0.017 4.017 19 C 0.074 3.926 20 C -0.117 4.117 21 N 0.550 4.450 22 O -0.361 6.361 23 O -0.362 6.362 24 C -0.036 4.036 25 O -0.188 6.188 26 C 0.096 3.904 27 O -0.208 6.208 28 H 0.084 0.916 29 H 0.230 0.770 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.252 0.748 33 H 0.189 0.811 34 H 0.194 0.806 35 H 0.164 0.836 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.895 -23.686 -1.051 23.886 hybrid contribution 0.659 0.723 -0.040 0.979 sum 3.555 -22.964 -1.091 23.263 Atomic orbital electron populations 1.69623 1.06046 1.28544 1.49131 1.25346 0.95680 1.00029 0.96629 0.85747 0.79766 0.80687 0.77864 1.19020 1.20579 1.20571 1.19799 0.93558 0.81869 1.48211 0.87471 1.41790 1.09510 1.04472 1.62257 1.19651 0.88319 0.84900 0.86182 1.90523 1.13551 1.86672 1.57452 1.21073 0.91597 0.85424 1.03841 1.45620 1.12166 1.04393 1.72677 1.17501 0.87517 0.82299 0.77899 1.90830 1.15251 1.84564 1.50278 1.19612 0.91993 0.93870 1.06150 1.20470 1.01412 0.87593 0.92083 1.19317 0.91005 0.85242 1.06090 1.19492 0.90444 0.86761 0.95938 1.19974 0.81990 0.90740 1.19035 1.43312 1.02465 1.00983 0.98225 1.94626 1.82180 1.06288 1.52967 1.94594 1.51140 1.37648 1.52826 1.21171 0.91146 0.99741 0.91577 1.87608 1.35259 1.13380 1.82550 1.25987 0.70556 0.92501 1.01357 1.87502 1.34576 1.13823 1.84859 0.91567 0.77004 0.89200 0.89202 0.74805 0.81139 0.80585 0.83618 0.88443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.18 13.05 55.50 0.72 -22.45 16 2 C 0.03 0.67 5.50 -17.46 -0.10 0.57 16 3 Si 0.93 20.08 29.55 -169.99 -5.02 15.06 16 4 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 6 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 7 C -0.31 -8.01 9.68 -14.93 -0.14 -8.16 16 8 H 0.11 2.95 7.16 -52.49 -0.38 2.58 16 9 N -0.55 -12.87 5.29 -10.96 -0.06 -12.93 16 10 C 0.42 9.09 7.85 -10.99 -0.09 9.00 16 11 O -0.60 -14.41 15.24 5.55 0.08 -14.33 16 12 C 0.11 1.77 6.15 -5.20 -0.03 1.74 16 13 N -0.69 -10.10 5.48 -62.51 -0.34 -10.45 16 14 C 0.56 7.53 7.76 -12.44 -0.10 7.43 16 15 O -0.53 -8.33 16.34 5.29 0.09 -8.25 16 16 C -0.11 -1.19 5.87 -104.97 -0.62 -1.80 16 17 C 0.00 0.04 9.60 -39.07 -0.38 -0.34 16 18 C 0.03 0.26 7.14 -39.14 -0.28 -0.02 16 19 C 0.12 1.24 6.76 -38.86 -0.26 0.98 16 20 C -0.03 -0.38 6.85 -79.89 -0.55 -0.93 16 21 N 0.03 0.39 4.45 33.99 0.15 0.54 16 22 O -0.14 -2.09 18.43 -29.46 -0.54 -2.63 16 23 O -0.14 -2.05 18.04 -34.59 -0.62 -2.68 16 24 C -0.02 -0.18 9.03 -39.21 -0.35 -0.53 16 25 O -0.27 -2.52 10.50 -50.78 -0.53 -3.05 16 26 C 0.21 1.04 8.88 101.05 0.90 1.94 16 27 O -0.29 -2.24 11.41 -45.83 -0.52 -2.76 16 28 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 29 H 0.40 8.93 7.90 -40.82 -0.32 8.61 16 30 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 31 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 32 H 0.41 5.90 5.46 -40.82 -0.22 5.68 16 33 H 0.17 1.39 7.64 -52.48 -0.40 0.99 16 34 H 0.18 1.81 5.93 -52.48 -0.31 1.49 16 35 H 0.15 0.25 8.14 -51.92 -0.42 -0.17 16 36 H 0.10 0.28 8.14 -51.93 -0.42 -0.15 16 LS Contribution 335.16 15.07 5.05 5.05 Total: -1.00 -32.09 335.16 -6.00 -38.09 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -2.46 Total: 10.90 kcal Atomic # 6 Polarization: 11.87 SS G_CDS: -1.99 Total: 9.88 kcal Atomic # 7 Polarization: -45.76 SS G_CDS: 0.48 Total: -45.28 kcal Atomic # 8 Polarization: -31.64 SS G_CDS: -2.05 Total: -33.69 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.09 -6.00 -38.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343516584.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.127 kcal (2) G-P(sol) polarization free energy of solvation -32.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds