Wall clock time and date at job start Tue Mar 31 2020 20:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31421 * 1 3 3 Si 1.86798 * 119.99906 * 2 1 4 4 H 1.48496 * 109.46980 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47227 * 299.99907 * 3 2 1 6 6 H 1.48503 * 109.47322 * 60.00313 * 3 2 1 7 7 C 1.38951 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99537 * 179.97438 * 7 2 1 9 9 N 1.37099 * 119.99960 * 359.97438 * 7 2 1 10 10 C 1.34773 * 119.99694 * 179.97438 * 9 7 2 11 11 O 1.21292 * 120.00105 * 0.02562 * 10 9 7 12 12 C 1.50704 * 120.00156 * 180.02562 * 10 9 7 13 13 N 1.46491 * 109.47374 * 180.02562 * 12 10 9 14 14 C 1.34778 * 120.00033 * 180.02562 * 13 12 10 15 15 O 1.21584 * 120.00167 * 359.97438 * 14 13 12 16 16 C 1.47609 * 119.99807 * 179.97438 * 14 13 12 17 17 C 1.39763 * 120.07996 * 179.97438 * 16 14 13 18 18 C 1.38082 * 119.90540 * 180.02562 * 17 16 14 19 19 C 1.39586 * 119.98066 * 359.97438 * 18 17 16 20 20 C 1.38820 * 120.05374 * 359.97438 * 19 18 17 21 21 N 1.48015 * 119.88734 * 179.97438 * 20 19 18 22 22 O 1.21801 * 120.00163 * 179.97438 * 21 20 19 23 23 O 1.21801 * 119.99992 * 359.97438 * 21 20 19 24 24 C 1.37798 * 120.21982 * 0.02562 * 20 19 18 25 25 O 1.36359 * 108.58438 * 179.97438 * 19 18 17 26 26 C 1.43963 * 105.53404 * 17.35018 * 25 19 18 27 27 O 1.36545 * 131.43595 * 179.97438 * 18 17 16 28 28 H 0.97002 * 119.99493 * 359.97438 * 1 2 3 29 29 H 0.96999 * 120.00213 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.46866 * 59.99897 * 12 10 9 31 31 H 1.09001 * 109.47040 * 300.00769 * 12 10 9 32 32 H 0.97001 * 120.00145 * 359.97438 * 13 12 10 33 33 H 1.08003 * 120.04563 * 0.03401 * 17 16 14 34 34 H 1.08003 * 119.99505 * 179.97438 * 24 20 19 35 35 H 1.09007 * 110.56253 * 214.18793 * 26 25 19 36 36 H 1.08997 * 110.56478 * 91.33755 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8895 2.3965 1.2125 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3907 -0.0005 10 6 1.9972 -3.5578 -0.0016 11 8 3.2102 -3.5578 -0.0021 12 6 1.2438 -4.8630 -0.0022 13 7 2.1957 -5.9764 -0.0027 14 6 1.7464 -7.2471 -0.0038 15 8 0.5511 -7.4693 -0.0039 16 6 2.7057 -8.3691 -0.0048 17 6 2.2417 -9.6874 -0.0054 18 6 3.1422 -10.7342 -0.0059 19 6 4.5137 -10.4744 -0.0063 20 6 4.9732 -9.1645 -0.0068 21 7 6.4283 -8.8933 -0.0067 22 8 6.8337 -7.7447 -0.0076 23 8 7.2202 -9.8187 -0.0057 24 6 4.0791 -8.1159 -0.0063 25 8 5.1812 -11.6635 -0.0061 26 6 4.2153 -12.6479 -0.4192 27 8 2.9555 -12.0868 -0.0060 28 1 -0.4849 0.8401 0.0004 29 1 0.3534 -2.3907 -0.0005 30 1 0.6168 -4.9201 -0.8920 31 1 0.6173 -4.9213 0.8880 32 1 3.1494 -5.7992 -0.0030 33 1 1.1803 -9.8871 -0.0056 34 1 4.4406 -7.0982 -0.0063 35 1 4.3959 -13.5969 0.0858 36 1 4.2401 -12.7780 -1.5011 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343516584.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:10 Heat of formation + Delta-G solvation = -119.377117 kcal Electronic energy + Delta-G solvation = -27872.960039 eV Core-core repulsion = 23326.518963 eV Total energy + Delta-G solvation = -4546.441076 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.088 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.98671 -43.11555 -41.43687 -40.11435 -38.86471 -37.92685 -37.66681 -36.31122 -35.49105 -33.38470 -33.16507 -32.09654 -29.36073 -27.87146 -27.22743 -26.51141 -25.27616 -24.00061 -22.28022 -21.45789 -20.77273 -20.20726 -20.00300 -19.56353 -19.04652 -18.73129 -18.45340 -18.22425 -17.48759 -17.06977 -16.84620 -16.81823 -16.38054 -15.91994 -15.74702 -15.61432 -15.40402 -15.00238 -14.70697 -14.43987 -14.29918 -14.00155 -13.60027 -13.54285 -13.49972 -12.91293 -12.83577 -12.47319 -12.43073 -12.40551 -12.36961 -12.10954 -11.56859 -11.48730 -10.93210 -10.55978 -10.36410 -10.07895 -9.73431 -8.50565 -5.99945 -1.55483 -0.94899 -0.08186 0.03535 1.00137 1.26775 1.35870 1.44397 1.56843 1.64598 1.91265 2.04914 2.10880 2.30864 2.62857 2.96724 3.10034 3.17256 3.22160 3.38031 3.49010 3.69058 3.89075 4.05268 4.17208 4.19923 4.28718 4.43614 4.44265 4.49436 4.58865 4.98061 5.06519 5.40381 5.44254 5.92832 6.24384 6.30397 6.49271 6.85367 7.05441 7.45415 7.95988 8.66341 Molecular weight = 337.09amu Principal moments of inertia in cm(-1) A = 0.019799 B = 0.002390 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.848095 B =11714.183290 C =13099.885405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.010 4.010 3 Si 0.993 3.007 4 H -0.271 1.271 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.334 4.334 8 H 0.086 0.914 9 N -0.559 5.559 10 C 0.430 3.570 11 O -0.624 6.624 12 C 0.120 3.880 13 N -0.700 5.700 14 C 0.572 3.428 15 O -0.552 6.552 16 C -0.114 4.114 17 C 0.018 3.982 18 C 0.040 3.960 19 C 0.128 3.872 20 C -0.047 4.047 21 N 0.032 4.968 22 O -0.175 6.175 23 O -0.153 6.153 24 C -0.009 4.009 25 O -0.289 6.289 26 C 0.198 3.802 27 O -0.294 6.294 28 H 0.279 0.721 29 H 0.400 0.600 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.413 0.587 33 H 0.185 0.815 34 H 0.175 0.825 35 H 0.183 0.817 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.087 -25.223 -1.311 25.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.210 4.210 3 Si 0.817 3.183 4 H -0.195 1.195 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.464 4.464 8 H 0.104 0.896 9 N -0.194 5.194 10 C 0.217 3.783 11 O -0.512 6.512 12 C -0.007 4.007 13 N -0.353 5.353 14 C 0.359 3.641 15 O -0.431 6.431 16 C -0.118 4.118 17 C -0.002 4.002 18 C -0.006 4.006 19 C 0.079 3.921 20 C -0.131 4.131 21 N 0.548 4.452 22 O -0.386 6.386 23 O -0.371 6.371 24 C -0.029 4.029 25 O -0.203 6.203 26 C 0.088 3.912 27 O -0.210 6.210 28 H 0.089 0.911 29 H 0.234 0.766 30 H 0.124 0.876 31 H 0.123 0.877 32 H 0.253 0.747 33 H 0.202 0.798 34 H 0.192 0.808 35 H 0.199 0.801 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.245 -25.508 -1.212 25.636 hybrid contribution 0.865 1.034 -0.001 1.348 sum 3.110 -24.475 -1.213 24.701 Atomic orbital electron populations 1.69678 1.06890 1.29515 1.49440 1.26074 0.96509 1.02552 0.95894 0.84857 0.78183 0.76995 0.78260 1.19537 1.19711 1.19720 1.19749 0.92942 0.83554 1.50118 0.89630 1.41828 1.09646 1.04559 1.63374 1.20456 0.88157 0.86006 0.83645 1.90506 1.15213 1.87501 1.57950 1.20909 0.91321 0.83112 1.05332 1.45622 1.11897 1.04519 1.73303 1.17675 0.87564 0.82160 0.76732 1.90823 1.16236 1.84797 1.51266 1.19229 0.91121 0.93574 1.07873 1.20538 1.02107 0.86916 0.90611 1.19225 0.90101 0.85967 1.05305 1.19606 0.91113 0.86720 0.94687 1.19952 0.80382 0.91696 1.21095 1.43568 1.03403 1.00608 0.97576 1.94620 1.82925 1.06657 1.54402 1.94566 1.52125 1.37542 1.52847 1.21088 0.91092 0.99593 0.91151 1.87608 1.36811 1.13508 1.82340 1.26644 0.68577 0.92368 1.03562 1.87514 1.35873 1.12740 1.84854 0.91108 0.76564 0.87610 0.87673 0.74690 0.79774 0.80807 0.80051 0.85826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.39 13.05 21.66 0.28 -47.10 16 2 C -0.01 -0.49 5.50 84.93 0.47 -0.02 16 3 Si 0.99 41.17 29.55 68.60 2.03 43.20 16 4 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 5 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 6 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 7 C -0.33 -17.90 9.68 84.04 0.81 -17.08 16 8 H 0.09 4.87 7.16 -2.91 -0.02 4.85 16 9 N -0.56 -26.68 5.29 -306.99 -1.62 -28.30 16 10 C 0.43 18.54 7.85 87.66 0.69 19.23 16 11 O -0.62 -30.70 15.24 -3.07 -0.05 -30.75 16 12 C 0.12 3.84 6.15 85.64 0.53 4.37 16 13 N -0.70 -19.79 5.48 -469.94 -2.57 -22.37 16 14 C 0.57 14.52 7.76 86.72 0.67 15.19 16 15 O -0.55 -16.34 16.34 -3.98 -0.07 -16.40 16 16 C -0.11 -2.25 5.87 -20.09 -0.12 -2.37 16 17 C 0.02 0.28 9.60 22.60 0.22 0.50 16 18 C 0.04 0.61 7.14 22.56 0.16 0.78 16 19 C 0.13 2.38 6.76 22.73 0.15 2.53 16 20 C -0.05 -1.03 6.85 36.41 0.25 -0.78 16 21 N 0.03 0.86 4.45 -46.38 -0.21 0.66 16 22 O -0.18 -5.25 18.43 18.89 0.35 -4.90 16 23 O -0.15 -4.32 18.04 23.79 0.43 -3.89 16 24 C -0.01 -0.19 9.03 22.51 0.20 0.01 16 25 O -0.29 -4.64 10.50 -69.10 -0.73 -5.36 16 26 C 0.20 1.30 8.88 113.37 1.01 2.30 16 27 O -0.29 -3.54 11.41 -76.58 -0.87 -4.42 16 28 H 0.28 13.54 8.31 -92.71 -0.77 12.77 16 29 H 0.40 18.19 7.90 -92.71 -0.73 17.46 16 30 H 0.11 3.09 8.14 -2.39 -0.02 3.08 16 31 H 0.11 3.09 8.14 -2.39 -0.02 3.07 16 32 H 0.41 11.78 5.46 -92.71 -0.51 11.28 16 33 H 0.18 2.49 7.64 -2.91 -0.02 2.47 16 34 H 0.17 3.62 5.93 -2.91 -0.02 3.61 16 35 H 0.18 -0.14 8.14 -2.38 -0.02 -0.16 16 36 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 Total: -1.00 -69.27 335.16 1.99 -67.28 By element: Atomic # 1 Polarization: 27.73 SS G_CDS: -0.03 Total: 27.71 kcal Atomic # 6 Polarization: 19.61 SS G_CDS: 5.04 Total: 24.65 kcal Atomic # 7 Polarization: -93.00 SS G_CDS: -4.12 Total: -97.12 kcal Atomic # 8 Polarization: -64.79 SS G_CDS: -0.93 Total: -65.72 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.20 kcal Total: -69.27 1.99 -67.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343516584.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.094 kcal (2) G-P(sol) polarization free energy of solvation -69.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds