Wall clock time and date at job start Tue Mar 31 2020 19:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86800 * 120.00139 * 2 1 4 4 H 1.48497 * 109.47374 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47337 * 300.00393 * 3 2 1 6 6 H 1.48507 * 109.47077 * 60.00096 * 3 2 1 7 7 C 1.38949 * 119.99996 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00075 * 179.97438 * 7 2 1 9 9 N 1.37096 * 120.00029 * 359.97438 * 7 2 1 10 10 C 1.34773 * 119.99986 * 179.97438 * 9 7 2 11 11 O 1.21294 * 120.00374 * 0.02562 * 10 9 7 12 12 C 1.50702 * 120.00203 * 179.97438 * 10 9 7 13 13 S 1.81396 * 109.47512 * 180.02562 * 12 10 9 14 14 O 1.42104 * 110.54241 * 73.34858 * 13 12 10 15 15 O 1.42103 * 110.54151 * 296.59995 * 13 12 10 16 16 C 1.76194 * 104.45086 * 184.97503 * 13 12 10 17 17 C 1.38261 * 120.00087 * 283.95123 * 16 13 12 18 18 C 1.38219 * 119.99920 * 179.97438 * 17 16 13 19 19 C 1.38255 * 119.99987 * 0.05240 * 18 17 16 20 20 C 1.38216 * 120.00178 * 359.94619 * 19 18 17 21 21 C 1.38218 * 120.00120 * 103.97444 * 16 13 12 22 22 C 1.50700 * 119.99751 * 359.97438 * 21 16 13 23 23 F 1.39897 * 109.47065 * 186.09595 * 22 21 16 24 24 F 1.39897 * 109.47427 * 306.09660 * 22 21 16 25 25 F 1.39902 * 109.46926 * 66.09762 * 22 21 16 26 26 H 0.97003 * 119.99942 * 0.02562 * 1 2 3 27 27 H 0.96994 * 119.99766 * 0.02562 * 9 7 2 28 28 H 1.09006 * 109.46731 * 60.00214 * 12 10 9 29 29 H 1.09000 * 109.47243 * 300.01193 * 12 10 9 30 30 H 1.07995 * 119.99965 * 359.72120 * 17 16 13 31 31 H 1.07998 * 119.99572 * 179.97438 * 18 17 16 32 32 H 1.07998 * 120.00071 * 179.97438 * 19 18 17 33 33 H 1.07994 * 119.99905 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8894 2.3965 -1.2125 6 1 1.8894 2.3964 1.2126 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9972 -3.5578 -0.0016 11 8 3.2102 -3.5579 -0.0021 12 6 1.2438 -4.8629 -0.0010 13 16 2.4225 -6.2417 -0.0019 14 8 3.0373 -6.3730 1.2725 15 8 3.1985 -6.2336 -1.1923 16 6 1.4161 -7.6805 -0.1491 17 6 0.7093 -8.1446 0.9448 18 6 -0.0805 -9.2729 0.8292 19 6 -0.1630 -9.9381 -0.3801 20 6 0.5435 -9.4741 -1.4736 21 6 1.3336 -8.3454 -1.3580 22 6 2.1039 -7.8395 -2.5503 23 9 1.7557 -8.5857 -3.6813 24 9 1.7954 -6.4923 -2.7674 25 9 3.4757 -7.9708 -2.3091 26 1 -0.4850 0.8401 -0.0004 27 1 0.3534 -2.3906 -0.0005 28 1 0.6161 -4.9205 -0.8904 29 1 0.6180 -4.9208 0.8896 30 1 0.7777 -7.6279 1.8907 31 1 -0.6323 -9.6357 1.6838 32 1 -0.7799 -10.8199 -0.4703 33 1 0.4787 -9.9934 -2.4183 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344674432.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:14 Heat of formation + Delta-G solvation = -208.261640 kcal Electronic energy + Delta-G solvation = -27758.918346 eV Core-core repulsion = 23077.226327 eV Total energy + Delta-G solvation = -4681.692019 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.043 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.97225 -47.57059 -47.24385 -39.72526 -38.41395 -36.85899 -35.66752 -34.24476 -32.49816 -31.86966 -31.52887 -29.74944 -26.22928 -24.87907 -23.76601 -22.40797 -20.11468 -19.27247 -18.78747 -18.21905 -18.20564 -17.99630 -17.27512 -16.12078 -16.07862 -15.99586 -15.53442 -15.11004 -14.85868 -14.57745 -14.28324 -14.18430 -14.14076 -13.94955 -13.70514 -13.54121 -13.49184 -13.33855 -13.06971 -12.71535 -12.38350 -12.14986 -11.75578 -11.71834 -11.60909 -11.49179 -11.17482 -10.92256 -10.62547 -10.43413 -10.32128 -9.91455 -9.73226 -9.68340 -8.93331 -8.19976 -6.59808 -4.01342 -0.02413 0.30793 0.61680 2.58040 2.83990 3.05853 3.08334 3.21197 3.29270 3.54642 3.66823 3.90273 4.03042 4.10226 4.20086 4.46783 4.49439 4.53638 4.61955 4.72713 4.83950 5.01436 5.08668 5.25324 5.33320 5.43956 5.54688 5.60078 5.75909 5.92420 6.19623 7.41021 7.81464 8.30953 8.94857 9.26046 9.73200 10.56870 Molecular weight = 337.04amu Principal moments of inertia in cm(-1) A = 0.019569 B = 0.003644 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.486812 B = 7681.349162 C = 8072.188260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.028 3.972 3 Si 0.935 3.065 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.306 4.306 8 H 0.111 0.889 9 N -0.535 5.535 10 C 0.453 3.547 11 O -0.589 6.589 12 C -0.624 4.624 13 S 2.521 3.479 14 O -0.919 6.919 15 O -0.909 6.909 16 C -0.625 4.625 17 C -0.025 4.025 18 C -0.110 4.110 19 C -0.072 4.072 20 C -0.094 4.094 21 C -0.089 4.089 22 C 0.505 3.495 23 F -0.182 7.182 24 F -0.161 7.161 25 F -0.147 7.147 26 H 0.275 0.725 27 H 0.397 0.603 28 H 0.149 0.851 29 H 0.146 0.854 30 H 0.151 0.849 31 H 0.143 0.857 32 H 0.142 0.858 33 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.580 -19.811 -0.915 20.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.176 4.176 3 Si 0.761 3.239 4 H -0.188 1.188 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.435 4.435 8 H 0.129 0.871 9 N -0.168 5.168 10 C 0.236 3.764 11 O -0.476 6.476 12 C -0.756 4.756 13 S 2.695 3.305 14 O -0.917 6.917 15 O -0.906 6.906 16 C -0.708 4.708 17 C -0.044 4.044 18 C -0.129 4.129 19 C -0.090 4.090 20 C -0.112 4.112 21 C -0.092 4.092 22 C 0.450 3.550 23 F -0.164 7.164 24 F -0.142 7.142 25 F -0.128 7.128 26 H 0.085 0.915 27 H 0.231 0.769 28 H 0.167 0.833 29 H 0.164 0.836 30 H 0.169 0.831 31 H 0.161 0.839 32 H 0.160 0.840 33 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -5.043 -19.630 -0.894 20.287 hybrid contribution -1.300 0.641 -0.248 1.470 sum -6.342 -18.988 -1.142 20.052 Atomic orbital electron populations 1.69618 1.06115 1.28670 1.48900 1.25371 0.95716 1.00114 0.96370 0.85709 0.79912 0.80369 0.77887 1.18827 1.20467 1.20488 1.19927 0.93839 0.81690 1.48076 0.87092 1.41721 1.09479 1.04205 1.61415 1.18317 0.87391 0.83454 0.87195 1.90675 1.12732 1.86372 1.57824 1.30483 1.18086 1.14718 1.12305 1.05161 0.75398 0.74419 0.75535 1.93540 1.71154 1.85115 1.41846 1.93680 1.64627 1.85386 1.46883 1.31080 1.17759 1.23062 0.98912 1.21045 0.91215 0.95280 0.96816 1.21552 0.98010 0.94974 0.98352 1.21489 0.96482 0.98846 0.92209 1.21199 0.94935 0.94581 1.00509 1.19790 0.98961 0.98160 0.92242 1.18046 0.79086 0.76035 0.81854 1.93142 1.92105 1.76775 1.54364 1.93243 1.92693 1.33242 1.95067 1.93294 1.30517 1.95116 1.93847 0.91491 0.76917 0.83316 0.83555 0.83122 0.83939 0.84007 0.83497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.40 13.05 55.50 0.72 -22.67 16 2 C 0.03 0.72 5.50 -17.47 -0.10 0.62 16 3 Si 0.94 20.48 29.55 -169.99 -5.02 15.46 16 4 H -0.26 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 7 C -0.31 -8.39 9.68 -14.93 -0.14 -8.54 16 8 H 0.11 3.19 7.16 -52.49 -0.38 2.81 16 9 N -0.53 -13.36 5.29 -10.96 -0.06 -13.42 16 10 C 0.45 10.77 7.80 -10.99 -0.09 10.69 16 11 O -0.59 -16.29 15.31 5.16 0.08 -16.21 16 12 C -0.62 -10.49 6.46 36.01 0.23 -10.26 16 13 S 2.52 44.71 3.87 -107.50 -0.42 44.29 16 14 O -0.92 -18.38 17.58 -57.54 -1.01 -19.40 16 15 O -0.91 -18.68 10.74 -59.49 -0.64 -19.32 16 16 C -0.63 -8.28 5.59 -39.58 -0.22 -8.50 16 17 C -0.02 -0.25 9.50 -39.58 -0.38 -0.63 16 18 C -0.11 -0.81 10.05 -39.58 -0.40 -1.20 16 19 C -0.07 -0.50 10.05 -39.58 -0.40 -0.90 16 20 C -0.09 -0.86 9.43 -39.58 -0.37 -1.23 16 21 C -0.09 -1.14 5.38 -104.62 -0.56 -1.70 16 22 C 0.50 7.57 2.78 36.01 0.10 7.67 16 23 F -0.18 -2.35 16.00 2.25 0.04 -2.32 16 24 F -0.16 -2.70 14.30 2.25 0.03 -2.67 16 25 F -0.15 -2.54 14.48 2.25 0.03 -2.51 16 26 H 0.28 6.76 8.31 -40.82 -0.34 6.42 16 27 H 0.40 9.20 7.90 -40.82 -0.32 8.88 16 28 H 0.15 2.05 8.14 -51.92 -0.42 1.63 16 29 H 0.15 1.85 8.14 -51.92 -0.42 1.43 16 30 H 0.15 1.24 7.95 -52.49 -0.42 0.83 16 31 H 0.14 0.58 8.06 -52.49 -0.42 0.15 16 32 H 0.14 0.49 8.06 -52.49 -0.42 0.06 16 33 H 0.15 1.03 7.18 -52.49 -0.38 0.65 16 LS Contribution 314.58 15.07 4.74 4.74 Total: -1.00 -35.60 314.58 -6.14 -41.74 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -2.32 Total: 6.25 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: -2.32 Total: -13.98 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: 0.67 Total: -36.10 kcal Atomic # 8 Polarization: -53.35 SS G_CDS: -1.57 Total: -54.92 kcal Atomic # 9 Polarization: -7.59 SS G_CDS: 0.10 Total: -7.49 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 16 Polarization: 44.71 SS G_CDS: -0.42 Total: 44.29 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -35.60 -6.14 -41.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344674432.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.520 kcal (2) G-P(sol) polarization free energy of solvation -35.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds