Wall clock time and date at job start Tue Mar 31 2020 19:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86800 * 120.00139 * 2 1 4 4 H 1.48497 * 109.47374 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47337 * 300.00393 * 3 2 1 6 6 H 1.48507 * 109.47077 * 60.00096 * 3 2 1 7 7 C 1.38949 * 119.99996 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00075 * 179.97438 * 7 2 1 9 9 N 1.37096 * 120.00029 * 359.97438 * 7 2 1 10 10 C 1.34773 * 119.99986 * 179.97438 * 9 7 2 11 11 O 1.21294 * 120.00374 * 0.02562 * 10 9 7 12 12 C 1.50702 * 120.00203 * 179.97438 * 10 9 7 13 13 S 1.81396 * 109.47512 * 180.02562 * 12 10 9 14 14 O 1.42104 * 110.54241 * 73.34858 * 13 12 10 15 15 O 1.42103 * 110.54151 * 296.59995 * 13 12 10 16 16 C 1.76194 * 104.45086 * 184.97503 * 13 12 10 17 17 C 1.38261 * 120.00087 * 283.95123 * 16 13 12 18 18 C 1.38219 * 119.99920 * 179.97438 * 17 16 13 19 19 C 1.38255 * 119.99987 * 0.05240 * 18 17 16 20 20 C 1.38216 * 120.00178 * 359.94619 * 19 18 17 21 21 C 1.38218 * 120.00120 * 103.97444 * 16 13 12 22 22 C 1.50700 * 119.99751 * 359.97438 * 21 16 13 23 23 F 1.39897 * 109.47065 * 186.09595 * 22 21 16 24 24 F 1.39897 * 109.47427 * 306.09660 * 22 21 16 25 25 F 1.39902 * 109.46926 * 66.09762 * 22 21 16 26 26 H 0.97003 * 119.99942 * 0.02562 * 1 2 3 27 27 H 0.96994 * 119.99766 * 0.02562 * 9 7 2 28 28 H 1.09006 * 109.46731 * 60.00214 * 12 10 9 29 29 H 1.09000 * 109.47243 * 300.01193 * 12 10 9 30 30 H 1.07995 * 119.99965 * 359.72120 * 17 16 13 31 31 H 1.07998 * 119.99572 * 179.97438 * 18 17 16 32 32 H 1.07998 * 120.00071 * 179.97438 * 19 18 17 33 33 H 1.07994 * 119.99905 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8894 2.3965 -1.2125 6 1 1.8894 2.3964 1.2126 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9972 -3.5578 -0.0016 11 8 3.2102 -3.5579 -0.0021 12 6 1.2438 -4.8629 -0.0010 13 16 2.4225 -6.2417 -0.0019 14 8 3.0373 -6.3730 1.2725 15 8 3.1985 -6.2336 -1.1923 16 6 1.4161 -7.6805 -0.1491 17 6 0.7093 -8.1446 0.9448 18 6 -0.0805 -9.2729 0.8292 19 6 -0.1630 -9.9381 -0.3801 20 6 0.5435 -9.4741 -1.4736 21 6 1.3336 -8.3454 -1.3580 22 6 2.1039 -7.8395 -2.5503 23 9 1.7557 -8.5857 -3.6813 24 9 1.7954 -6.4923 -2.7674 25 9 3.4757 -7.9708 -2.3091 26 1 -0.4850 0.8401 -0.0004 27 1 0.3534 -2.3906 -0.0005 28 1 0.6161 -4.9205 -0.8904 29 1 0.6180 -4.9208 0.8896 30 1 0.7777 -7.6279 1.8907 31 1 -0.6323 -9.6357 1.6838 32 1 -0.7799 -10.8199 -0.4703 33 1 0.4787 -9.9934 -2.4183 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344674432.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:13 Heat of formation + Delta-G solvation = -235.350823 kcal Electronic energy + Delta-G solvation = -27760.093022 eV Core-core repulsion = 23077.226327 eV Total energy + Delta-G solvation = -4682.866694 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.043 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -51.11429 -48.69109 -48.46912 -40.48362 -40.33268 -38.28108 -37.09327 -36.25699 -33.57734 -33.26560 -32.58310 -31.31264 -27.19619 -26.83912 -24.55515 -23.28781 -21.86248 -20.58358 -20.10120 -19.92341 -19.39224 -19.13662 -18.49684 -17.60914 -17.49820 -17.34828 -16.59211 -16.39038 -16.13358 -15.83905 -15.70266 -15.62906 -15.39979 -15.22689 -14.92418 -14.72169 -14.66894 -14.56248 -14.23615 -13.80202 -13.71925 -13.64292 -13.26194 -13.11310 -12.95525 -12.91878 -12.54002 -12.48182 -12.21981 -12.09108 -11.74358 -11.68032 -10.93340 -10.61255 -10.40111 -10.20399 -8.59871 -6.10465 -1.24242 -0.58895 -0.06918 1.28798 1.41016 1.55344 1.56680 1.74995 1.79498 2.16443 2.25496 2.58927 2.65605 2.96048 3.01217 3.08009 3.12284 3.38408 3.65683 3.89968 3.94079 3.96047 4.17351 4.19124 4.26461 4.29550 4.62655 4.79496 5.04258 5.15237 5.32643 5.60625 5.79390 6.34090 6.93110 7.27288 7.81096 8.56911 Molecular weight = 337.04amu Principal moments of inertia in cm(-1) A = 0.019569 B = 0.003644 C = 0.003468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.486812 B = 7681.349162 C = 8072.188260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C -0.002 4.002 3 Si 0.996 3.004 4 H -0.274 1.274 5 H -0.267 1.267 6 H -0.265 1.265 7 C -0.347 4.347 8 H 0.084 0.916 9 N -0.541 5.541 10 C 0.443 3.557 11 O -0.636 6.636 12 C -0.616 4.616 13 S 2.511 3.489 14 O -0.959 6.959 15 O -0.953 6.953 16 C -0.631 4.631 17 C -0.033 4.033 18 C -0.097 4.097 19 C -0.052 4.052 20 C -0.091 4.091 21 C -0.110 4.110 22 C 0.493 3.507 23 F -0.173 7.173 24 F -0.179 7.179 25 F -0.169 7.169 26 H 0.284 0.716 27 H 0.405 0.595 28 H 0.181 0.819 29 H 0.192 0.808 30 H 0.165 0.835 31 H 0.187 0.813 32 H 0.190 0.810 33 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.770 -21.957 -0.154 24.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.204 4.204 3 Si 0.819 3.181 4 H -0.199 1.199 5 H -0.192 1.192 6 H -0.189 1.189 7 C -0.476 4.476 8 H 0.102 0.898 9 N -0.176 5.176 10 C 0.229 3.771 11 O -0.526 6.526 12 C -0.747 4.747 13 S 2.693 3.307 14 O -0.956 6.956 15 O -0.950 6.950 16 C -0.720 4.720 17 C -0.051 4.051 18 C -0.115 4.115 19 C -0.069 4.069 20 C -0.110 4.110 21 C -0.113 4.113 22 C 0.439 3.561 23 F -0.154 7.154 24 F -0.160 7.160 25 F -0.150 7.150 26 H 0.094 0.906 27 H 0.240 0.760 28 H 0.198 0.802 29 H 0.209 0.791 30 H 0.183 0.817 31 H 0.204 0.796 32 H 0.208 0.792 33 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -8.229 -21.724 -0.129 23.231 hybrid contribution -0.431 1.123 -0.500 1.302 sum -8.660 -20.601 -0.629 22.356 Atomic orbital electron populations 1.69650 1.06837 1.29978 1.48214 1.26126 0.96630 1.02546 0.95125 0.84831 0.78046 0.76500 0.78737 1.19850 1.19175 1.18950 1.19867 0.93167 0.83573 1.51030 0.89786 1.41750 1.09750 1.04193 1.61857 1.19316 0.87305 0.85309 0.85134 1.90644 1.15256 1.87615 1.59133 1.30401 1.17972 1.10271 1.16073 1.04715 0.76181 0.75624 0.74170 1.93485 1.73118 1.86018 1.42965 1.93629 1.67149 1.86339 1.47853 1.30113 1.19664 1.21399 1.00828 1.21444 0.90930 0.96561 0.96195 1.22089 0.96362 0.93023 1.00008 1.22103 0.94792 0.99254 0.90741 1.21586 0.93793 0.93033 1.02538 1.19703 1.00652 1.00148 0.90773 1.18508 0.78615 0.75603 0.83384 1.93144 1.91878 1.76294 1.54086 1.93191 1.92694 1.34834 1.95281 1.93237 1.32538 1.95158 1.94073 0.90644 0.76018 0.80189 0.79064 0.81718 0.79602 0.79242 0.81431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.20 13.05 21.66 0.28 -46.92 16 2 C 0.00 -0.13 5.50 84.93 0.47 0.34 16 3 Si 1.00 42.14 29.55 68.60 2.03 44.17 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 6 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 7 C -0.35 -19.76 9.68 84.04 0.81 -18.94 16 8 H 0.08 5.14 7.16 -2.91 -0.02 5.12 16 9 N -0.54 -27.85 5.29 -306.99 -1.62 -29.47 16 10 C 0.44 21.89 7.80 87.66 0.68 22.57 16 11 O -0.64 -37.39 15.31 -2.70 -0.04 -37.44 16 12 C -0.62 -20.70 6.46 71.24 0.46 -20.24 16 13 S 2.51 92.03 3.87 -56.49 -0.22 91.81 16 14 O -0.96 -40.01 17.58 -127.65 -2.24 -42.25 16 15 O -0.95 -41.79 10.74 -125.78 -1.35 -43.14 16 16 C -0.63 -15.94 5.59 22.27 0.12 -15.82 16 17 C -0.03 -0.55 9.50 22.27 0.21 -0.34 16 18 C -0.10 -0.85 10.05 22.27 0.22 -0.63 16 19 C -0.05 -0.39 10.05 22.27 0.22 -0.17 16 20 C -0.09 -1.32 9.43 22.27 0.21 -1.11 16 21 C -0.11 -2.65 5.38 -19.87 -0.11 -2.76 16 22 C 0.49 15.10 2.78 71.24 0.20 15.30 16 23 F -0.17 -4.40 16.00 44.97 0.72 -3.68 16 24 F -0.18 -6.25 14.30 44.97 0.64 -5.61 16 25 F -0.17 -6.20 14.48 44.97 0.65 -5.54 16 26 H 0.28 13.63 8.31 -92.71 -0.77 12.86 16 27 H 0.40 18.99 7.90 -92.71 -0.73 18.25 16 28 H 0.18 4.84 8.14 -2.39 -0.02 4.82 16 29 H 0.19 4.52 8.14 -2.39 -0.02 4.50 16 30 H 0.17 2.23 7.95 -2.91 -0.02 2.21 16 31 H 0.19 0.11 8.06 -2.91 -0.02 0.08 16 32 H 0.19 -0.25 8.06 -2.91 -0.02 -0.27 16 33 H 0.17 1.67 7.18 -2.91 -0.02 1.65 16 Total: -1.00 -84.56 314.58 2.82 -81.74 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: 0.47 Total: 18.13 kcal Atomic # 6 Polarization: -25.31 SS G_CDS: 3.51 Total: -21.80 kcal Atomic # 7 Polarization: -75.05 SS G_CDS: -1.34 Total: -76.39 kcal Atomic # 8 Polarization: -119.19 SS G_CDS: -3.64 Total: -122.83 kcal Atomic # 9 Polarization: -16.85 SS G_CDS: 2.01 Total: -14.83 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Atomic # 16 Polarization: 92.03 SS G_CDS: -0.22 Total: 91.81 kcal Total: -84.56 2.82 -81.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344674432.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.613 kcal (2) G-P(sol) polarization free energy of solvation -84.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -238.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -235.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds