Wall clock time and date at job start Tue Mar 31 2020 20:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86796 * 120.00094 * 2 1 4 4 H 1.48498 * 109.47297 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47265 * 300.00269 * 3 2 1 6 6 H 1.48500 * 109.46720 * 60.00187 * 3 2 1 7 7 C 1.38799 * 119.99937 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00090 * 180.02562 * 7 2 1 9 9 S 1.76203 * 120.00156 * 0.02562 * 7 2 1 10 10 C 1.81000 * 100.00123 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47423 * 180.02562 * 10 9 7 12 12 N 1.31130 * 126.55178 * 90.24463 * 11 10 9 13 13 C 1.34496 * 105.61276 * 180.12529 * 12 11 10 14 14 C 1.50706 * 126.28686 * 179.90688 * 13 12 11 15 15 C 1.50700 * 109.47339 * 269.71592 * 14 13 12 16 16 O 1.21294 * 119.99719 * 359.97438 * 15 14 13 17 17 N 1.34766 * 120.00384 * 179.97438 * 15 14 13 18 18 C 1.40045 * 120.00587 * 185.53281 * 17 15 14 19 19 C 1.38809 * 120.07182 * 24.80918 * 18 17 15 20 20 C 1.38151 * 119.95125 * 179.97438 * 19 18 17 21 21 C 1.38279 * 120.11073 * 359.97438 * 20 19 18 22 22 C 1.38262 * 120.15847 * 359.97438 * 21 20 19 23 23 C 1.38315 * 120.04645 * 0.02562 * 22 21 20 24 24 F 1.35094 * 120.05690 * 179.97438 * 23 22 21 25 25 N 1.29947 * 107.42692 * 359.64638 * 13 12 11 26 26 O 1.21299 * 110.24940 * 0.22616 * 25 13 12 27 27 H 0.96998 * 120.00435 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.46973 * 59.99667 * 10 9 7 29 29 H 1.09000 * 109.47197 * 300.00445 * 10 9 7 30 30 H 1.09000 * 109.46699 * 149.71655 * 14 13 12 31 31 H 1.08997 * 109.46697 * 29.71787 * 14 13 12 32 32 H 0.97003 * 119.99957 * 5.53130 * 17 15 14 33 33 H 1.07995 * 120.02798 * 359.95622 * 19 18 17 34 34 H 1.07998 * 119.94395 * 180.02562 * 20 19 18 35 35 H 1.08005 * 119.92011 * 179.97438 * 21 20 19 36 36 H 1.08002 * 119.97761 * 179.74040 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1293 -2.7280 -0.0019 10 6 2.5158 -3.8915 -0.0029 11 6 1.9874 -5.3028 -0.0048 12 7 1.7181 -6.0344 -1.0592 13 6 1.2729 -7.2097 -0.5802 14 6 0.8292 -8.3955 -1.3976 15 6 -0.6495 -8.2931 -1.6697 16 8 -1.2810 -7.3501 -1.2415 17 7 -1.2702 -9.2490 -2.3887 18 6 -2.6173 -9.0972 -2.7403 19 6 -3.1747 -7.8289 -2.8275 20 6 -4.5036 -7.6820 -3.1751 21 6 -5.2795 -8.7963 -3.4369 22 6 -4.7287 -10.0617 -3.3525 23 6 -3.3989 -10.2163 -3.0050 24 9 -2.8606 -11.4526 -2.9219 25 7 1.3010 -7.1369 0.7170 26 8 1.7084 -6.0496 1.0678 27 1 -0.4851 0.8400 0.0004 28 1 3.1244 -3.7321 0.8872 29 1 3.1245 -3.7306 -0.8927 30 1 1.0346 -9.3135 -0.8470 31 1 1.3724 -8.4091 -2.3424 32 1 -0.7840 -10.0424 -2.6627 33 1 -2.5701 -6.9577 -2.6235 34 1 -4.9371 -6.6952 -3.2433 35 1 -6.3182 -8.6779 -3.7080 36 1 -5.3384 -10.9302 -3.5535 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350689509.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:37 Heat of formation + Delta-G solvation = 19.311424 kcal Electronic energy + Delta-G solvation = -24823.140542 eV Core-core repulsion = 20737.839112 eV Total energy + Delta-G solvation = -4085.301430 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.068 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.22485 -45.28335 -40.80934 -38.65629 -35.79961 -35.15286 -33.57385 -32.54628 -31.17716 -30.71292 -29.15827 -28.37846 -25.61870 -24.13023 -23.35702 -22.81708 -21.69589 -20.60159 -18.71087 -18.02022 -17.92930 -17.47785 -17.22912 -16.94958 -16.33604 -15.87298 -15.54784 -15.26223 -14.90179 -14.64392 -14.53618 -14.24127 -14.00510 -13.97104 -13.43796 -13.08847 -12.99622 -12.77996 -12.49348 -12.17836 -11.89558 -11.84275 -11.44520 -11.13107 -11.12872 -10.96435 -10.92524 -10.74428 -10.29198 -10.04515 -9.41571 -9.17831 -9.10761 -8.50102 -8.42977 -6.71068 -6.33840 -4.08264 0.78285 0.94481 1.34511 2.13883 2.23304 2.69948 3.06986 3.17299 3.21712 3.26775 3.37793 3.42664 3.65656 3.86627 4.06796 4.13743 4.26057 4.46120 4.70418 4.81848 4.92169 4.95583 5.03530 5.07674 5.20544 5.22518 5.46404 5.65001 5.68457 5.85172 5.86560 5.89295 6.05978 6.12445 6.22664 6.24110 6.65452 6.89100 7.50232 7.69780 8.24691 8.41300 9.11907 10.74096 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.015507 B = 0.002454 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.242546 B =11407.587554 C =12933.073118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.074 3.926 3 Si 0.924 3.076 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.526 4.526 8 H 0.081 0.919 9 S -0.078 6.078 10 C -0.044 4.044 11 C 0.232 3.768 12 N -0.474 5.474 13 C 0.176 3.824 14 C -0.041 4.041 15 C 0.519 3.481 16 O -0.490 6.490 17 N -0.670 5.670 18 C 0.123 3.877 19 C -0.105 4.105 20 C -0.104 4.104 21 C -0.112 4.112 22 C -0.134 4.134 23 C 0.061 3.939 24 F -0.140 7.140 25 N -0.380 5.380 26 O 0.083 5.917 27 H 0.270 0.730 28 H 0.103 0.897 29 H 0.111 0.889 30 H 0.124 0.876 31 H 0.131 0.869 32 H 0.415 0.585 33 H 0.158 0.842 34 H 0.136 0.864 35 H 0.133 0.867 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.792 -21.075 -7.373 22.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.136 4.136 3 Si 0.750 3.250 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.674 4.674 8 H 0.099 0.901 9 S 0.147 5.853 10 C -0.193 4.193 11 C 0.012 3.988 12 N -0.209 5.209 13 C -0.098 4.098 14 C -0.083 4.083 15 C 0.305 3.695 16 O -0.362 6.362 17 N -0.315 5.315 18 C 0.027 3.973 19 C -0.125 4.125 20 C -0.122 4.122 21 C -0.131 4.131 22 C -0.153 4.153 23 C 0.040 3.960 24 F -0.119 7.119 25 N -0.088 5.088 26 O 0.023 5.977 27 H 0.080 0.920 28 H 0.121 0.879 29 H 0.129 0.871 30 H 0.142 0.858 31 H 0.149 0.851 32 H 0.251 0.749 33 H 0.175 0.825 34 H 0.154 0.846 35 H 0.151 0.849 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.666 -21.259 -6.941 23.070 hybrid contribution 2.082 0.702 -0.095 2.199 sum -3.584 -20.557 -7.035 22.021 Atomic orbital electron populations 1.70011 1.06022 1.27701 1.46377 1.25031 0.95114 0.99233 0.94200 0.86021 0.79600 0.81373 0.77974 1.19402 1.20477 1.20468 1.22759 0.94900 0.90125 1.59663 0.90124 1.85354 1.04899 0.98095 1.96926 1.21996 1.04479 0.85846 1.06952 1.28159 0.93764 0.96871 0.79996 1.71859 1.18518 1.01866 1.28613 1.24616 1.01370 0.95376 0.88419 1.19741 0.92381 0.94626 1.01513 1.20476 0.89474 0.82157 0.77360 1.90803 1.66227 1.31401 1.47811 1.43324 1.09637 1.24093 1.54463 1.17782 0.84349 0.93376 1.01744 1.21498 0.96376 0.96317 0.98271 1.21241 0.93390 0.99590 0.98005 1.21044 1.00459 0.91417 1.00201 1.20968 0.92710 0.99265 1.02393 1.17376 0.92322 0.78297 1.08033 1.91466 1.86296 1.39714 1.94431 1.74527 1.17751 1.01335 1.15203 1.85286 1.58873 1.17764 1.35776 0.92016 0.87864 0.87056 0.85796 0.85083 0.74877 0.82477 0.84649 0.84864 0.84438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.17 13.22 55.49 0.73 -24.44 16 2 C 0.07 2.02 5.49 -17.43 -0.10 1.93 16 3 Si 0.92 20.66 29.55 -169.99 -5.02 15.63 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 7 C -0.53 -14.22 9.50 30.94 0.29 -13.92 16 8 H 0.08 2.05 7.80 -52.49 -0.41 1.64 16 9 S -0.08 -2.00 21.42 -107.50 -2.30 -4.30 16 10 C -0.04 -0.85 6.30 36.00 0.23 -0.62 16 11 C 0.23 4.39 7.77 -13.06 -0.10 4.29 16 12 N -0.47 -8.76 11.55 -9.87 -0.11 -8.87 16 13 C 0.18 2.86 6.71 -156.37 -1.05 1.81 16 14 C -0.04 -0.44 6.33 -29.03 -0.18 -0.62 16 15 C 0.52 6.65 7.63 -10.99 -0.08 6.56 16 16 O -0.49 -8.69 13.20 5.55 0.07 -8.62 16 17 N -0.67 -6.66 5.31 -9.81 -0.05 -6.71 16 18 C 0.12 1.40 6.44 -83.59 -0.54 0.86 16 19 C -0.10 -1.30 8.72 -39.40 -0.34 -1.64 16 20 C -0.10 -1.04 10.04 -39.60 -0.40 -1.44 16 21 C -0.11 -0.92 10.04 -39.56 -0.40 -1.32 16 22 C -0.13 -1.14 10.02 -39.54 -0.40 -1.54 16 23 C 0.06 0.62 7.31 -39.25 -0.29 0.33 16 24 F -0.14 -1.37 16.81 2.25 0.04 -1.33 16 25 N -0.38 -6.76 12.16 30.90 0.38 -6.38 16 26 O 0.08 1.54 11.31 18.09 0.20 1.74 16 27 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 28 H 0.10 1.78 8.14 -51.91 -0.42 1.36 16 29 H 0.11 2.02 8.14 -51.92 -0.42 1.60 16 30 H 0.12 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.13 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.41 2.66 8.46 -40.82 -0.35 2.32 16 33 H 0.16 2.33 5.79 -52.49 -0.30 2.03 16 34 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 35 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 36 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 LS Contribution 345.25 15.07 5.20 5.20 Total: -1.00 -34.56 345.25 -7.37 -41.93 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -3.15 Total: 1.47 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: -3.35 Total: -5.32 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: 0.94 Total: -46.41 kcal Atomic # 8 Polarization: -7.15 SS G_CDS: 0.28 Total: -6.87 kcal Atomic # 9 Polarization: -1.37 SS G_CDS: 0.04 Total: -1.33 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: -2.00 SS G_CDS: -2.30 Total: -4.30 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.56 -7.37 -41.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350689509.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.246 kcal (2) G-P(sol) polarization free energy of solvation -34.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds