Wall clock time and date at job start Tue Mar 31 2020 20:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86796 * 120.00094 * 2 1 4 4 H 1.48498 * 109.47297 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47265 * 300.00269 * 3 2 1 6 6 H 1.48500 * 109.46720 * 60.00187 * 3 2 1 7 7 C 1.38799 * 119.99937 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00090 * 180.02562 * 7 2 1 9 9 S 1.76203 * 120.00156 * 0.02562 * 7 2 1 10 10 C 1.81000 * 100.00123 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47423 * 180.02562 * 10 9 7 12 12 N 1.31130 * 126.55178 * 90.24463 * 11 10 9 13 13 C 1.34496 * 105.61276 * 180.12529 * 12 11 10 14 14 C 1.50706 * 126.28686 * 179.90688 * 13 12 11 15 15 C 1.50700 * 109.47339 * 269.71592 * 14 13 12 16 16 O 1.21294 * 119.99719 * 359.97438 * 15 14 13 17 17 N 1.34766 * 120.00384 * 179.97438 * 15 14 13 18 18 C 1.40045 * 120.00587 * 185.53281 * 17 15 14 19 19 C 1.38809 * 120.07182 * 24.80918 * 18 17 15 20 20 C 1.38151 * 119.95125 * 179.97438 * 19 18 17 21 21 C 1.38279 * 120.11073 * 359.97438 * 20 19 18 22 22 C 1.38262 * 120.15847 * 359.97438 * 21 20 19 23 23 C 1.38315 * 120.04645 * 0.02562 * 22 21 20 24 24 F 1.35094 * 120.05690 * 179.97438 * 23 22 21 25 25 N 1.29947 * 107.42692 * 359.64638 * 13 12 11 26 26 O 1.21299 * 110.24940 * 0.22616 * 25 13 12 27 27 H 0.96998 * 120.00435 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.46973 * 59.99667 * 10 9 7 29 29 H 1.09000 * 109.47197 * 300.00445 * 10 9 7 30 30 H 1.09000 * 109.46699 * 149.71655 * 14 13 12 31 31 H 1.08997 * 109.46697 * 29.71787 * 14 13 12 32 32 H 0.97003 * 119.99957 * 5.53130 * 17 15 14 33 33 H 1.07995 * 120.02798 * 359.95622 * 19 18 17 34 34 H 1.07998 * 119.94395 * 180.02562 * 20 19 18 35 35 H 1.08005 * 119.92011 * 179.97438 * 21 20 19 36 36 H 1.08002 * 119.97761 * 179.74040 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2020 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1293 -2.7280 -0.0019 10 6 2.5158 -3.8915 -0.0029 11 6 1.9874 -5.3028 -0.0048 12 7 1.7181 -6.0344 -1.0592 13 6 1.2729 -7.2097 -0.5802 14 6 0.8292 -8.3955 -1.3976 15 6 -0.6495 -8.2931 -1.6697 16 8 -1.2810 -7.3501 -1.2415 17 7 -1.2702 -9.2490 -2.3887 18 6 -2.6173 -9.0972 -2.7403 19 6 -3.1747 -7.8289 -2.8275 20 6 -4.5036 -7.6820 -3.1751 21 6 -5.2795 -8.7963 -3.4369 22 6 -4.7287 -10.0617 -3.3525 23 6 -3.3989 -10.2163 -3.0050 24 9 -2.8606 -11.4526 -2.9219 25 7 1.3010 -7.1369 0.7170 26 8 1.7084 -6.0496 1.0678 27 1 -0.4851 0.8400 0.0004 28 1 3.1244 -3.7321 0.8872 29 1 3.1245 -3.7306 -0.8927 30 1 1.0346 -9.3135 -0.8470 31 1 1.3724 -8.4091 -2.3424 32 1 -0.7840 -10.0424 -2.6627 33 1 -2.5701 -6.9577 -2.6235 34 1 -4.9371 -6.6952 -3.2433 35 1 -6.3182 -8.6779 -3.7080 36 1 -5.3384 -10.9302 -3.5535 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350689509.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:36 Heat of formation + Delta-G solvation = -5.232418 kcal Electronic energy + Delta-G solvation = -24824.204843 eV Core-core repulsion = 20737.839112 eV Total energy + Delta-G solvation = -4086.365730 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.068 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.98770 -46.67276 -41.74605 -39.50506 -37.12845 -36.10372 -34.95245 -34.60110 -32.15341 -31.52824 -30.22647 -29.71086 -27.69938 -25.21251 -24.46907 -23.73708 -22.85942 -21.62586 -19.93968 -19.55517 -19.25398 -18.52320 -18.24793 -18.09616 -17.18387 -16.90161 -16.68229 -16.57131 -16.30785 -16.16203 -15.71460 -15.48380 -15.15552 -14.82688 -14.77072 -14.37331 -14.19065 -13.83348 -13.51845 -13.19022 -13.17109 -12.96649 -12.91077 -12.88957 -12.67707 -12.54734 -12.16719 -11.93866 -11.81719 -11.19004 -11.17441 -10.93889 -10.38207 -9.89597 -9.23982 -8.77263 -8.38558 -6.18955 -0.13772 -0.00944 0.16267 0.83411 1.30984 1.37488 1.43710 1.53308 1.60395 1.75135 1.81921 2.22563 2.48728 2.60351 2.86452 2.98425 3.08786 3.25296 3.39043 3.73283 3.78920 3.98278 4.08168 4.12287 4.28887 4.30353 4.36147 4.41002 4.50802 4.69961 4.82486 4.94355 5.03230 5.15153 5.26970 5.42557 5.45754 5.87759 6.10395 6.18788 6.82143 6.99937 7.03926 8.71309 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.015507 B = 0.002454 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.242546 B =11407.587554 C =12933.073118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.015 3.985 3 Si 1.001 2.999 4 H -0.254 1.254 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.534 4.534 8 H 0.093 0.907 9 S -0.158 6.158 10 C -0.018 4.018 11 C 0.223 3.777 12 N -0.486 5.486 13 C 0.182 3.818 14 C -0.040 4.040 15 C 0.519 3.481 16 O -0.550 6.550 17 N -0.652 5.652 18 C 0.104 3.896 19 C -0.132 4.132 20 C -0.113 4.113 21 C -0.102 4.102 22 C -0.128 4.128 23 C 0.058 3.942 24 F -0.138 7.138 25 N -0.393 5.393 26 O 0.070 5.930 27 H 0.272 0.728 28 H 0.126 0.874 29 H 0.126 0.874 30 H 0.165 0.835 31 H 0.167 0.833 32 H 0.432 0.568 33 H 0.125 0.875 34 H 0.143 0.857 35 H 0.167 0.833 36 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.231 -22.774 -8.365 24.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.190 4.190 3 Si 0.823 3.177 4 H -0.177 1.177 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.682 4.682 8 H 0.111 0.889 9 S 0.068 5.932 10 C -0.167 4.167 11 C 0.002 3.998 12 N -0.221 5.221 13 C -0.092 4.092 14 C -0.080 4.080 15 C 0.306 3.694 16 O -0.426 6.426 17 N -0.299 5.299 18 C 0.009 3.991 19 C -0.152 4.152 20 C -0.131 4.131 21 C -0.120 4.120 22 C -0.147 4.147 23 C 0.036 3.964 24 F -0.116 7.116 25 N -0.103 5.103 26 O 0.014 5.986 27 H 0.081 0.919 28 H 0.144 0.856 29 H 0.144 0.856 30 H 0.183 0.817 31 H 0.185 0.815 32 H 0.272 0.728 33 H 0.142 0.858 34 H 0.161 0.839 35 H 0.185 0.815 36 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -5.083 -23.008 -7.941 24.865 hybrid contribution 1.829 1.048 0.160 2.114 sum -3.254 -21.960 -7.782 23.524 Atomic orbital electron populations 1.70168 1.07986 1.28762 1.47815 1.26133 0.95976 1.03341 0.93536 0.84858 0.78752 0.76110 0.77975 1.17746 1.20092 1.20020 1.23131 0.95476 0.90425 1.59151 0.88916 1.85473 1.09909 1.00600 1.97193 1.21783 1.01771 0.84311 1.08793 1.28037 0.94393 0.96907 0.80462 1.71872 1.18672 1.02817 1.28784 1.25498 0.99442 0.95940 0.88330 1.20114 0.90949 0.93900 1.03025 1.20834 0.90152 0.81621 0.76747 1.90802 1.67585 1.33798 1.50453 1.43142 1.09409 1.24035 1.53301 1.17894 0.85021 0.93538 1.02688 1.21359 0.97413 0.95935 1.00496 1.21449 0.92743 1.01021 0.97902 1.21403 1.01677 0.90508 0.98457 1.21382 0.92182 1.00440 1.00709 1.17476 0.92865 0.77920 1.08090 1.91473 1.86382 1.39340 1.94431 1.74514 1.18481 1.01146 1.16163 1.85265 1.59249 1.18191 1.35890 0.91879 0.85562 0.85608 0.81726 0.81525 0.72779 0.85768 0.83875 0.81514 0.81451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.29 13.22 21.65 0.29 -54.01 16 2 C 0.02 0.83 5.49 84.86 0.47 1.30 16 3 Si 1.00 42.26 29.55 68.60 2.03 44.29 16 4 H -0.25 -9.96 7.11 99.48 0.71 -9.25 16 5 H -0.28 -11.37 7.11 99.48 0.71 -10.66 16 6 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 7 C -0.53 -29.06 9.50 67.95 0.65 -28.41 16 8 H 0.09 4.64 7.80 -2.91 -0.02 4.62 16 9 S -0.16 -8.31 21.42 -56.49 -1.21 -9.52 16 10 C -0.02 -0.68 6.30 71.23 0.45 -0.23 16 11 C 0.22 8.46 7.77 88.38 0.69 9.15 16 12 N -0.49 -17.91 11.55 -303.20 -3.50 -21.42 16 13 C 0.18 5.79 6.71 138.46 0.93 6.72 16 14 C -0.04 -0.77 6.33 29.10 0.18 -0.58 16 15 C 0.52 13.21 7.63 87.66 0.67 13.87 16 16 O -0.55 -20.47 13.20 -3.07 -0.04 -20.51 16 17 N -0.65 -12.51 5.31 -303.33 -1.61 -14.12 16 18 C 0.10 2.35 6.44 38.16 0.25 2.60 16 19 C -0.13 -3.44 8.72 22.39 0.20 -3.24 16 20 C -0.11 -2.25 10.04 22.26 0.22 -2.03 16 21 C -0.10 -1.45 10.04 22.29 0.22 -1.23 16 22 C -0.13 -1.84 10.02 22.29 0.22 -1.62 16 23 C 0.06 1.08 7.31 22.48 0.16 1.24 16 24 F -0.14 -2.38 16.81 44.97 0.76 -1.63 16 25 N -0.39 -13.92 12.16 -60.32 -0.73 -14.65 16 26 O 0.07 2.64 11.31 74.81 0.85 3.49 16 27 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 28 H 0.13 4.26 8.14 -2.39 -0.02 4.24 16 29 H 0.13 4.48 8.14 -2.40 -0.02 4.46 16 30 H 0.17 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.17 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.43 4.74 8.46 -92.71 -0.78 3.95 16 33 H 0.12 4.09 5.79 -2.91 -0.02 4.08 16 34 H 0.14 2.49 8.06 -2.91 -0.02 2.47 16 35 H 0.17 1.24 8.06 -2.91 -0.02 1.22 16 36 H 0.17 1.39 8.06 -2.91 -0.02 1.37 16 Total: -1.00 -79.00 345.25 2.50 -76.50 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: 0.38 Total: 14.01 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: 5.30 Total: -2.45 kcal Atomic # 7 Polarization: -98.63 SS G_CDS: -5.56 Total: -104.19 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: 0.81 Total: -17.02 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.76 Total: -1.63 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Atomic # 16 Polarization: -8.31 SS G_CDS: -1.21 Total: -9.52 kcal Total: -79.00 2.50 -76.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350689509.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.271 kcal (2) G-P(sol) polarization free energy of solvation -79.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds