Wall clock time and date at job start Tue Mar 31 2020 20:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38318 * 119.96156 * 2 1 4 4 C 1.38271 * 120.15372 * 180.02562 * 3 2 1 5 5 C 1.38121 * 120.07656 * 0.02562 * 4 3 2 6 6 C 1.38912 * 119.91982 * 0.26062 * 5 4 3 7 7 N 1.39717 * 120.07673 * 179.72034 * 6 5 4 8 8 C 1.39043 * 120.00392 * 209.53524 * 7 6 5 9 9 N 1.29597 * 125.39792 * 5.85566 * 8 7 6 10 10 N 1.37765 * 115.61973 * 179.97438 * 9 8 7 11 11 C 1.29668 * 115.60184 * 359.97438 * 10 9 8 12 12 S 1.76197 * 125.41236 * 179.97438 * 11 10 9 13 13 C 1.81403 * 103.00182 * 359.97438 * 12 11 10 14 14 C 1.52999 * 109.47326 * 179.97438 * 13 12 11 15 15 H 1.09000 * 109.47054 * 304.99733 * 14 13 12 16 16 O 1.42896 * 109.47132 * 64.99693 * 14 13 12 17 17 C 1.50698 * 109.46832 * 184.99906 * 14 13 12 18 18 H 1.07999 * 120.00324 * 359.97438 * 17 14 13 19 19 C 1.37885 * 119.99318 * 180.02562 * 17 14 13 20 20 N 1.31521 * 119.99497 * 180.02562 * 19 17 14 21 21 Si 1.86798 * 120.00498 * 359.97438 * 19 17 14 22 22 H 1.48501 * 109.47104 * 90.00195 * 21 19 17 23 23 H 1.48503 * 109.47146 * 210.00466 * 21 19 17 24 24 H 1.48500 * 109.46953 * 330.00206 * 21 19 17 25 25 S 1.76038 * 125.40530 * 185.55045 * 8 7 6 26 26 C 1.38070 * 119.96211 * 180.02562 * 2 1 3 27 27 H 1.08995 * 109.47338 * 89.99743 * 1 2 3 28 28 H 1.09001 * 109.47203 * 209.99427 * 1 2 3 29 29 H 1.09001 * 109.46805 * 329.99308 * 1 2 3 30 30 H 1.07997 * 119.92120 * 0.02776 * 3 2 1 31 31 H 1.07994 * 119.96399 * 180.02562 * 4 3 2 32 32 H 1.07997 * 120.03799 * 179.97438 * 5 4 3 33 33 H 0.96999 * 119.99683 * 29.52754 * 7 6 5 34 34 H 1.08999 * 109.46774 * 299.99958 * 13 12 11 35 35 H 1.08996 * 109.46869 * 59.99516 * 13 12 11 36 36 H 0.96701 * 113.99949 * 60.00036 * 16 14 13 37 37 H 0.96994 * 119.99940 * 180.02562 * 20 19 17 38 38 H 1.08001 * 120.03663 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1983 0.0000 4 6 3.5805 1.2030 -0.0005 5 6 4.2767 0.0101 -0.0016 6 6 3.5861 -1.1952 -0.0076 7 7 4.2871 -2.4038 -0.0146 8 6 3.7292 -3.5277 -0.6139 9 7 2.6217 -3.5480 -1.2865 10 7 2.2559 -4.7751 -1.7948 11 6 3.0668 -5.7532 -1.5357 12 16 2.8519 -7.4228 -2.0561 13 6 1.2921 -7.3646 -2.9805 14 6 0.9596 -8.7616 -3.5085 15 1 1.7983 -9.1376 -4.0945 16 8 0.7148 -9.6406 -2.4088 17 6 -0.2691 -8.6906 -4.3781 18 1 -0.7636 -7.7439 -4.5379 19 6 -0.7624 -9.8346 -4.9689 20 7 -1.8344 -9.7726 -5.7283 21 14 0.0926 -11.4722 -4.6920 22 1 -0.4870 -12.1375 -3.4976 23 1 -0.0991 -12.3383 -5.8830 24 1 1.5437 -11.2425 -4.4754 25 16 4.4192 -5.1470 -0.5857 26 6 2.1966 -1.1962 -0.0005 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3634 -0.8900 0.5137 29 1 -0.3633 0.8899 0.5140 30 1 1.6559 2.1325 0.0005 31 1 4.1167 2.1404 -0.0001 32 1 5.3567 0.0144 -0.0024 33 1 5.1630 -2.4588 0.3985 34 1 0.4924 -7.0246 -2.3225 35 1 1.3917 -6.6742 -3.8180 36 1 -0.0200 -9.3672 -1.8427 37 1 -2.1817 -10.5774 -6.1437 38 1 1.6565 -2.1315 -0.0014 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352161437.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:40 Heat of formation + Delta-G solvation = 22.158194 kcal Electronic energy + Delta-G solvation = -22574.099948 eV Core-core repulsion = 19055.135140 eV Total energy + Delta-G solvation = -3518.964808 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 337.066 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.20052 -40.05651 -38.26995 -37.25773 -34.50221 -33.64160 -32.24483 -31.78881 -30.53640 -27.91906 -27.69702 -26.26838 -23.92770 -23.08109 -22.80385 -21.54449 -20.57011 -19.64746 -18.58240 -18.05292 -17.34275 -17.01438 -16.84959 -16.61749 -16.34854 -16.20815 -15.80963 -15.18501 -14.88609 -14.81530 -14.77301 -14.40095 -14.03901 -13.92416 -13.63968 -13.53271 -13.10218 -12.98295 -12.76002 -12.67922 -12.49981 -12.20250 -12.05933 -11.85488 -11.64653 -11.34728 -11.18526 -10.99863 -10.90187 -10.58863 -10.45214 -9.69253 -9.17062 -8.65153 -8.39380 -6.57408 -0.85246 -0.52025 -0.16993 0.20424 0.39449 0.45807 1.05911 1.13838 1.43272 1.45928 1.59685 1.76595 2.36290 2.81469 2.93961 3.32382 3.82746 3.86232 3.88914 3.98855 3.99746 4.10153 4.22703 4.39786 4.42948 4.62856 4.75138 4.80298 4.81821 4.93459 5.17394 5.22713 5.26622 5.32566 5.44514 5.57095 5.72466 5.97328 6.02312 6.16500 6.55342 6.84008 7.04823 7.22887 8.74402 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.019385 B = 0.002422 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.038374 B =11558.840741 C =12725.352057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.076 4.076 3 C -0.143 4.143 4 C -0.091 4.091 5 C -0.152 4.152 6 C 0.146 3.854 7 N -0.609 5.609 8 C 0.291 3.709 9 N -0.368 5.368 10 N -0.297 5.297 11 C 0.002 3.998 12 S 0.038 5.962 13 C -0.105 4.105 14 C 0.218 3.782 15 H 0.071 0.929 16 O -0.580 6.580 17 C -0.563 4.563 18 H 0.042 0.958 19 C 0.034 3.966 20 N -0.932 5.932 21 Si 0.974 3.026 22 H -0.271 1.271 23 H -0.302 1.302 24 H -0.256 1.256 25 S 0.150 5.850 26 C -0.155 4.155 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.088 0.912 30 H 0.145 0.855 31 H 0.159 0.841 32 H 0.154 0.846 33 H 0.442 0.558 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.379 0.621 37 H 0.271 0.729 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.849 19.966 16.693 31.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.077 4.077 3 C -0.162 4.162 4 C -0.109 4.109 5 C -0.173 4.173 6 C 0.050 3.950 7 N -0.244 5.244 8 C -0.091 4.091 9 N -0.204 5.204 10 N -0.126 5.126 11 C -0.398 4.398 12 S 0.268 5.732 13 C -0.255 4.255 14 C 0.158 3.842 15 H 0.089 0.911 16 O -0.388 6.388 17 C -0.602 4.602 18 H 0.060 0.940 19 C -0.167 4.167 20 N -0.571 5.571 21 Si 0.801 3.199 22 H -0.196 1.196 23 H -0.230 1.230 24 H -0.181 1.181 25 S 0.384 5.616 26 C -0.177 4.177 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.107 0.893 30 H 0.163 0.837 31 H 0.176 0.824 32 H 0.172 0.828 33 H 0.284 0.716 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.228 0.772 37 H 0.080 0.920 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 17.484 18.880 16.325 30.474 hybrid contribution -1.332 0.493 -0.291 1.450 sum 16.151 19.373 16.034 29.887 Atomic orbital electron populations 1.20824 0.90412 1.03297 1.02625 1.20018 0.96967 0.92669 0.97999 1.21352 0.95000 0.97625 1.02209 1.21319 0.93963 0.98359 0.97259 1.21103 1.01225 0.89970 1.04976 1.17883 0.91211 0.84832 1.01108 1.41231 1.21335 1.03572 1.58291 1.26178 0.94398 0.92984 0.95550 1.75261 1.14576 1.13590 1.17001 1.75579 1.24180 0.93464 1.19423 1.30857 0.98539 1.05746 1.04612 1.85614 1.30303 0.93438 1.63893 1.24356 0.95486 1.03752 1.01909 1.19434 0.95634 0.84066 0.85045 0.91128 1.86340 1.56503 1.53825 1.42098 1.21599 1.12072 0.95536 1.30986 0.93958 1.25818 0.94788 1.03377 0.92736 1.70055 1.23919 1.30845 1.32259 0.85288 0.80166 0.78086 0.76398 1.19620 1.22963 1.18065 1.85107 1.23874 0.97513 1.55131 1.21056 0.93331 0.98820 1.04464 0.91267 0.92465 0.89295 0.83728 0.82364 0.82834 0.71581 0.89376 0.89524 0.77186 0.91994 0.87161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.07 10.01 71.24 0.71 -1.36 16 2 C -0.08 -1.56 5.88 -19.89 -0.12 -1.67 16 3 C -0.14 -2.18 9.70 22.30 0.22 -1.97 16 4 C -0.09 -1.14 10.04 22.25 0.22 -0.91 16 5 C -0.15 -2.11 9.96 22.40 0.22 -1.89 16 6 C 0.15 2.93 6.41 38.22 0.25 3.17 16 7 N -0.61 -10.90 5.52 -186.64 -1.03 -11.93 16 8 C 0.29 7.27 8.10 179.20 1.45 8.73 16 9 N -0.37 -12.21 9.33 -56.26 -0.53 -12.74 16 10 N -0.30 -10.79 11.62 -55.46 -0.64 -11.43 16 11 C 0.00 0.05 7.82 130.56 1.02 1.07 16 12 S 0.04 1.22 21.95 -56.49 -1.24 -0.01 16 13 C -0.10 -4.08 5.14 71.98 0.37 -3.71 16 14 C 0.22 9.73 2.30 29.85 0.07 9.80 16 15 H 0.07 3.21 7.20 -2.39 -0.02 3.19 16 16 O -0.58 -24.10 10.79 -148.98 -1.61 -25.71 16 17 C -0.56 -30.88 9.34 25.60 0.24 -30.64 16 18 H 0.04 2.57 7.99 -2.91 -0.02 2.55 16 19 C 0.03 1.93 5.47 84.66 0.46 2.39 16 20 N -0.93 -56.75 13.96 21.45 0.30 -56.45 16 21 Si 0.97 46.01 26.18 68.60 1.80 47.81 16 22 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 23 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 24 H -0.26 -11.61 6.54 99.48 0.65 -10.96 16 25 S 0.15 3.31 23.39 -56.49 -1.32 1.99 16 26 C -0.16 -3.81 8.44 22.40 0.19 -3.63 16 27 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.06 1.12 8.08 -2.39 -0.02 1.10 16 29 H 0.09 1.15 8.08 -2.39 -0.02 1.13 16 30 H 0.14 1.49 8.06 -2.91 -0.02 1.47 16 31 H 0.16 0.95 8.06 -2.91 -0.02 0.93 16 32 H 0.15 1.17 8.06 -2.91 -0.02 1.15 16 33 H 0.44 4.30 8.92 -92.71 -0.83 3.48 16 34 H 0.09 3.47 8.14 -2.39 -0.02 3.45 16 35 H 0.09 3.56 8.14 -2.39 -0.02 3.54 16 36 H 0.38 13.81 9.04 -74.06 -0.67 13.14 16 37 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 38 H 0.11 3.32 6.17 -2.91 -0.02 3.30 16 Total: -1.00 -71.50 354.48 0.60 -70.89 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: -0.43 Total: 18.19 kcal Atomic # 6 Polarization: -25.92 SS G_CDS: 5.31 Total: -20.61 kcal Atomic # 7 Polarization: -90.65 SS G_CDS: -1.90 Total: -92.55 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: -1.61 Total: -25.71 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 1.80 Total: 47.81 kcal Atomic # 16 Polarization: 4.54 SS G_CDS: -2.56 Total: 1.98 kcal Total: -71.50 0.60 -70.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352161437.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.051 kcal (2) G-P(sol) polarization free energy of solvation -71.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds