Wall clock time and date at job start Tue Mar 31 2020 20:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86797 * 120.00053 * 2 1 4 4 H 1.48500 * 109.47340 * 87.06431 * 3 2 1 5 5 H 1.48507 * 109.47099 * 207.06407 * 3 2 1 6 6 H 1.48503 * 109.47041 * 327.06124 * 3 2 1 7 7 C 1.39950 * 119.99826 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99924 * 15.93145 * 7 2 1 9 9 C 1.41398 * 120.00002 * 195.92280 * 7 2 1 10 10 C 1.40738 * 120.24206 * 28.50486 * 9 7 2 11 11 C 1.37592 * 119.74304 * 180.02562 * 10 9 7 12 12 C 1.38661 * 120.25167 * 0.02562 * 11 10 9 13 13 C 1.38612 * 120.49808 * 359.97438 * 12 11 10 14 14 C 1.37642 * 120.25096 * 359.67397 * 13 12 11 15 15 S 1.76198 * 120.12939 * 180.32096 * 14 13 12 16 16 O 1.42104 * 106.39907 * 230.49023 * 15 14 13 17 17 O 1.42100 * 106.40127 * 3.40939 * 15 14 13 18 18 N 1.65599 * 107.21751 * 116.95262 * 15 14 13 19 19 C 1.39956 * 119.99747 * 292.63766 * 18 15 14 20 20 C 1.38719 * 120.07964 * 30.64003 * 19 18 15 21 21 C 1.38412 * 119.95822 * 179.74627 * 20 19 18 22 22 F 1.35091 * 119.94505 * 180.27395 * 21 20 19 23 23 C 1.38451 * 120.10885 * 0.52417 * 21 20 19 24 24 C 1.38298 * 120.15405 * 359.72610 * 23 21 20 25 25 C 1.38481 * 120.03886 * 0.02562 * 24 23 21 26 26 O 1.36056 * 120.05203 * 179.97438 * 25 24 23 27 27 H 0.96992 * 120.00002 * 0.02562 * 1 2 3 28 28 H 1.07997 * 120.12537 * 359.97438 * 10 9 7 29 29 H 1.07998 * 119.87583 * 180.02562 * 11 10 9 30 30 H 1.07994 * 119.74975 * 179.97438 * 12 11 10 31 31 H 1.08001 * 119.87587 * 179.97438 * 13 12 11 32 32 H 0.97000 * 120.00227 * 112.64087 * 18 15 14 33 33 H 1.07996 * 120.02077 * 359.97438 * 20 19 18 34 34 H 1.07999 * 119.92609 * 179.70649 * 23 21 20 35 35 H 1.07996 * 119.98070 * 179.97438 * 24 23 21 36 36 H 0.96703 * 113.99673 * 270.02031 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4277 2.0823 1.3982 5 1 3.5695 1.4230 -0.6370 6 1 1.4721 2.6339 -0.7613 7 6 2.0079 -1.2120 0.0005 8 1 1.4990 -2.1295 -0.2558 9 6 3.3812 -1.2354 0.3365 10 6 3.9141 -0.2682 1.2090 11 6 5.2520 -0.3003 1.5286 12 6 6.0746 -1.2803 0.9941 13 6 5.5606 -2.2378 0.1337 14 6 4.2238 -2.2294 -0.1942 15 16 3.5721 -3.4532 -1.2815 16 8 2.8418 -2.7545 -2.2804 17 8 4.6438 -4.3380 -1.5781 18 7 2.4638 -4.3330 -0.4213 19 6 2.8858 -5.1510 0.6330 20 6 4.0052 -4.8055 1.3759 21 6 4.4173 -5.6136 2.4214 22 9 5.5042 -5.2740 3.1482 23 6 3.7204 -6.7720 2.7201 24 6 2.6069 -7.1236 1.9792 25 6 2.1861 -6.3170 0.9351 26 8 1.0909 -6.6629 0.2056 27 1 -0.4850 0.8400 -0.0004 28 1 3.2754 0.4967 1.6254 29 1 5.6631 0.4406 2.1982 30 1 7.1236 -1.2976 1.2500 31 1 6.2104 -2.9963 -0.2771 32 1 1.5221 -4.2814 -0.6481 33 1 4.5526 -3.9047 1.1411 34 1 4.0474 -7.4028 3.5335 35 1 2.0657 -8.0281 2.2144 36 1 1.2886 -7.2162 -0.5624 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355847394.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:07 Heat of formation + Delta-G solvation = -110.861507 kcal Electronic energy + Delta-G solvation = -27571.404410 eV Core-core repulsion = 23448.165507 eV Total energy + Delta-G solvation = -4123.238902 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.062 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -48.72326 -39.83450 -38.06464 -36.68962 -36.29864 -35.16430 -34.78653 -33.97950 -30.86616 -30.54876 -29.72292 -28.42711 -25.55509 -23.15149 -22.35707 -22.17970 -21.31215 -19.04746 -18.58395 -17.99787 -17.84462 -17.36953 -16.69305 -15.99804 -15.75612 -15.55192 -15.41982 -15.21201 -14.72083 -14.33563 -13.94464 -13.86826 -13.66731 -13.53440 -12.90251 -12.84222 -12.52497 -12.28211 -12.07398 -11.76754 -11.67621 -11.44310 -11.41729 -11.32809 -11.09006 -10.93021 -10.86831 -10.53298 -10.35727 -10.04599 -9.63766 -9.36730 -8.68178 -8.33492 -8.03112 -7.96272 -7.33726 -5.00282 1.09493 1.13048 1.28288 1.92807 2.41335 2.89301 3.02022 3.11501 3.42525 3.51106 3.71178 4.13683 4.18712 4.37515 4.43261 4.79118 4.90348 5.04248 5.18273 5.24517 5.48902 5.73516 5.80794 5.88141 5.90347 6.04338 6.11349 6.21171 6.26419 6.40698 6.53087 6.78697 6.81348 6.96242 7.08789 7.20449 7.29197 7.43857 7.65182 7.66790 7.88901 8.12671 8.35127 9.65194 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.012631 B = 0.005725 C = 0.005036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.165136 B = 4890.048821 C = 5559.153829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.088 3.912 3 Si 0.918 3.082 4 H -0.265 1.265 5 H -0.239 1.239 6 H -0.284 1.284 7 C -0.425 4.425 8 H 0.100 0.900 9 C 0.159 3.841 10 C -0.232 4.232 11 C -0.040 4.040 12 C -0.253 4.253 13 C 0.013 3.987 14 C -0.779 4.779 15 S 2.690 3.310 16 O -0.947 6.947 17 O -0.979 6.979 18 N -1.047 6.047 19 C 0.203 3.797 20 C -0.199 4.199 21 C 0.131 3.869 22 F -0.134 7.134 23 C -0.172 4.172 24 C -0.089 4.089 25 C 0.059 3.941 26 O -0.488 6.488 27 H 0.295 0.705 28 H 0.109 0.891 29 H 0.102 0.898 30 H 0.104 0.896 31 H 0.117 0.883 32 H 0.431 0.569 33 H 0.162 0.838 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.225 -8.786 3.489 9.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.137 4.137 3 Si 0.743 3.257 4 H -0.192 1.192 5 H -0.162 1.162 6 H -0.211 1.211 7 C -0.452 4.452 8 H 0.117 0.883 9 C 0.154 3.846 10 C -0.252 4.252 11 C -0.059 4.059 12 C -0.274 4.274 13 C -0.007 4.007 14 C -0.874 4.874 15 S 2.788 3.212 16 O -0.937 6.937 17 O -0.970 6.970 18 N -0.791 5.791 19 C 0.103 3.897 20 C -0.221 4.221 21 C 0.111 3.889 22 F -0.112 7.112 23 C -0.192 4.192 24 C -0.109 4.109 25 C 0.010 3.990 26 O -0.297 6.297 27 H 0.106 0.894 28 H 0.127 0.873 29 H 0.120 0.880 30 H 0.122 0.878 31 H 0.134 0.866 32 H 0.268 0.732 33 H 0.179 0.821 34 H 0.156 0.844 35 H 0.158 0.842 36 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 2.981 -8.490 2.949 9.469 hybrid contribution 0.178 1.051 0.449 1.156 sum 3.159 -7.439 3.397 8.767 Atomic orbital electron populations 1.69623 1.08242 1.31438 1.29945 1.26227 0.94919 1.02248 0.90280 0.86241 0.81495 0.78763 0.79168 1.19154 1.16158 1.21077 1.19825 0.92278 0.96918 1.36166 0.88254 1.17010 0.91646 0.88869 0.87063 1.21211 0.95674 1.03454 1.04823 1.20854 0.93536 0.95785 0.95710 1.20511 0.98776 1.00945 1.07151 1.20380 0.92646 0.95467 0.92216 1.29702 1.03003 1.23611 1.31127 1.01647 0.72488 0.73283 0.73752 1.93594 1.71978 1.72801 1.55318 1.93507 1.54343 1.65602 1.83530 1.53861 1.24132 1.56950 1.44194 1.17408 0.93400 0.90400 0.88485 1.21506 1.00373 1.03242 0.96964 1.17249 0.85428 0.94606 0.91626 1.91505 1.51759 1.92190 1.75787 1.20892 0.97583 0.97402 1.03287 1.21012 0.95440 0.99452 0.94965 1.18110 0.90858 0.93428 0.96601 1.84882 1.28888 1.72701 1.43256 0.89427 0.87341 0.87996 0.87775 0.86559 0.73178 0.82083 0.84366 0.84183 0.75838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.95 13.93 55.55 0.77 -18.17 16 2 C 0.09 2.15 5.44 -17.34 -0.09 2.06 16 3 Si 0.92 19.61 24.42 -169.99 -4.15 15.46 16 4 H -0.27 -5.34 6.60 56.52 0.37 -4.97 16 5 H -0.24 -5.30 6.80 56.52 0.38 -4.91 16 6 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 7 C -0.43 -10.69 8.23 -37.74 -0.31 -11.00 16 8 H 0.10 2.49 5.76 -52.48 -0.30 2.18 16 9 C 0.16 3.82 5.16 -106.82 -0.55 3.26 16 10 C -0.23 -5.22 7.12 -38.87 -0.28 -5.50 16 11 C -0.04 -0.81 10.02 -39.66 -0.40 -1.21 16 12 C -0.25 -4.97 10.05 -39.29 -0.39 -5.37 16 13 C 0.01 0.26 7.76 -39.66 -0.31 -0.04 16 14 C -0.78 -17.47 4.26 -38.87 -0.17 -17.63 16 15 S 2.69 57.06 4.54 -107.50 -0.49 56.57 16 16 O -0.95 -22.69 16.70 -57.17 -0.95 -23.64 16 17 O -0.98 -21.08 16.34 -57.17 -0.93 -22.01 16 18 N -1.05 -19.18 4.77 32.51 0.16 -19.02 16 19 C 0.20 3.50 6.25 -83.57 -0.52 2.98 16 20 C -0.20 -3.57 8.90 -39.34 -0.35 -3.92 16 21 C 0.13 2.06 7.29 -39.44 -0.29 1.77 16 22 F -0.13 -2.14 17.26 2.25 0.04 -2.10 16 23 C -0.17 -2.16 10.02 -39.48 -0.40 -2.56 16 24 C -0.09 -1.08 9.98 -39.47 -0.39 -1.48 16 25 C 0.06 0.85 6.72 -39.10 -0.26 0.59 16 26 O -0.49 -6.16 13.00 -19.92 -0.26 -6.42 16 27 H 0.29 6.46 8.30 -40.82 -0.34 6.13 16 28 H 0.11 2.37 4.31 -52.49 -0.23 2.14 16 29 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 30 H 0.10 1.75 8.06 -52.49 -0.42 1.32 16 31 H 0.12 2.20 7.33 -52.49 -0.38 1.82 16 32 H 0.43 7.35 8.19 -34.47 -0.28 7.07 16 33 H 0.16 3.12 3.54 -52.49 -0.19 2.94 16 34 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 35 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 36 H 0.39 3.10 9.07 45.56 0.41 3.51 16 LS Contribution 317.40 15.07 4.78 4.78 Total: -1.00 -30.14 317.40 -7.59 -37.73 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -1.84 Total: 14.86 kcal Atomic # 6 Polarization: -33.32 SS G_CDS: -4.71 Total: -38.03 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: 0.93 Total: -37.20 kcal Atomic # 8 Polarization: -49.92 SS G_CDS: -2.15 Total: -52.07 kcal Atomic # 9 Polarization: -2.14 SS G_CDS: 0.04 Total: -2.10 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -4.15 Total: 15.46 kcal Atomic # 16 Polarization: 57.06 SS G_CDS: -0.49 Total: 56.57 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.14 -7.59 -37.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355847394.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.134 kcal (2) G-P(sol) polarization free energy of solvation -30.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds