Wall clock time and date at job start Tue Mar 31 2020 20:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86797 * 120.00053 * 2 1 4 4 H 1.48500 * 109.47340 * 87.06431 * 3 2 1 5 5 H 1.48507 * 109.47099 * 207.06407 * 3 2 1 6 6 H 1.48503 * 109.47041 * 327.06124 * 3 2 1 7 7 C 1.39950 * 119.99826 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99924 * 15.93145 * 7 2 1 9 9 C 1.41398 * 120.00002 * 195.92280 * 7 2 1 10 10 C 1.40738 * 120.24206 * 28.50486 * 9 7 2 11 11 C 1.37592 * 119.74304 * 180.02562 * 10 9 7 12 12 C 1.38661 * 120.25167 * 0.02562 * 11 10 9 13 13 C 1.38612 * 120.49808 * 359.97438 * 12 11 10 14 14 C 1.37642 * 120.25096 * 359.67397 * 13 12 11 15 15 S 1.76198 * 120.12939 * 180.32096 * 14 13 12 16 16 O 1.42104 * 106.39907 * 230.49023 * 15 14 13 17 17 O 1.42100 * 106.40127 * 3.40939 * 15 14 13 18 18 N 1.65599 * 107.21751 * 116.95262 * 15 14 13 19 19 C 1.39956 * 119.99747 * 292.63766 * 18 15 14 20 20 C 1.38719 * 120.07964 * 30.64003 * 19 18 15 21 21 C 1.38412 * 119.95822 * 179.74627 * 20 19 18 22 22 F 1.35091 * 119.94505 * 180.27395 * 21 20 19 23 23 C 1.38451 * 120.10885 * 0.52417 * 21 20 19 24 24 C 1.38298 * 120.15405 * 359.72610 * 23 21 20 25 25 C 1.38481 * 120.03886 * 0.02562 * 24 23 21 26 26 O 1.36056 * 120.05203 * 179.97438 * 25 24 23 27 27 H 0.96992 * 120.00002 * 0.02562 * 1 2 3 28 28 H 1.07997 * 120.12537 * 359.97438 * 10 9 7 29 29 H 1.07998 * 119.87583 * 180.02562 * 11 10 9 30 30 H 1.07994 * 119.74975 * 179.97438 * 12 11 10 31 31 H 1.08001 * 119.87587 * 179.97438 * 13 12 11 32 32 H 0.97000 * 120.00227 * 112.64087 * 18 15 14 33 33 H 1.07996 * 120.02077 * 359.97438 * 20 19 18 34 34 H 1.07999 * 119.92609 * 179.70649 * 23 21 20 35 35 H 1.07996 * 119.98070 * 179.97438 * 24 23 21 36 36 H 0.96703 * 113.99673 * 270.02031 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4277 2.0823 1.3982 5 1 3.5695 1.4230 -0.6370 6 1 1.4721 2.6339 -0.7613 7 6 2.0079 -1.2120 0.0005 8 1 1.4990 -2.1295 -0.2558 9 6 3.3812 -1.2354 0.3365 10 6 3.9141 -0.2682 1.2090 11 6 5.2520 -0.3003 1.5286 12 6 6.0746 -1.2803 0.9941 13 6 5.5606 -2.2378 0.1337 14 6 4.2238 -2.2294 -0.1942 15 16 3.5721 -3.4532 -1.2815 16 8 2.8418 -2.7545 -2.2804 17 8 4.6438 -4.3380 -1.5781 18 7 2.4638 -4.3330 -0.4213 19 6 2.8858 -5.1510 0.6330 20 6 4.0052 -4.8055 1.3759 21 6 4.4173 -5.6136 2.4214 22 9 5.5042 -5.2740 3.1482 23 6 3.7204 -6.7720 2.7201 24 6 2.6069 -7.1236 1.9792 25 6 2.1861 -6.3170 0.9351 26 8 1.0909 -6.6629 0.2056 27 1 -0.4850 0.8400 -0.0004 28 1 3.2754 0.4967 1.6254 29 1 5.6631 0.4406 2.1982 30 1 7.1236 -1.2976 1.2500 31 1 6.2104 -2.9963 -0.2771 32 1 1.5221 -4.2814 -0.6481 33 1 4.5526 -3.9047 1.1411 34 1 4.0474 -7.4028 3.5335 35 1 2.0657 -8.0281 2.2144 36 1 1.2886 -7.2162 -0.5624 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355847394.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:06 Heat of formation + Delta-G solvation = -133.929942 kcal Electronic energy + Delta-G solvation = -27572.404732 eV Core-core repulsion = 23448.165507 eV Total energy + Delta-G solvation = -4124.239225 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.062 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.91645 -40.98377 -39.73741 -38.33080 -37.47181 -36.93608 -36.11299 -35.70210 -32.58773 -32.12958 -30.97609 -29.59924 -27.29612 -24.37378 -23.81383 -23.54649 -22.98885 -20.59816 -19.76785 -19.67064 -19.14420 -18.90748 -18.25146 -17.35277 -17.21655 -16.94616 -16.71638 -16.48884 -16.16300 -15.97469 -15.63563 -15.36496 -14.98934 -14.75567 -14.59711 -14.11521 -13.91845 -13.75976 -13.61261 -13.29992 -13.20103 -13.19277 -13.05081 -12.84699 -12.78147 -12.57608 -12.21904 -12.09774 -11.75836 -11.55838 -11.29417 -11.03673 -9.99729 -9.86225 -9.68028 -9.22789 -9.10377 -6.81509 -0.53104 0.00091 0.12471 0.23985 0.70550 1.18096 1.33576 1.41095 1.90738 2.00744 2.36225 2.43119 2.74304 3.10763 3.20505 3.22121 3.55912 3.69629 3.94312 4.05392 4.12368 4.26609 4.32813 4.54930 4.61816 4.65292 4.81565 4.87013 4.98409 5.09422 5.10349 5.26499 5.29304 5.46077 5.55220 5.68460 5.76037 5.87637 5.91550 6.12835 6.39445 6.58077 6.79132 7.93699 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.012631 B = 0.005725 C = 0.005036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.165136 B = 4890.048821 C = 5559.153829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.054 3.946 3 Si 0.958 3.042 4 H -0.244 1.244 5 H -0.255 1.255 6 H -0.273 1.273 7 C -0.465 4.465 8 H 0.083 0.917 9 C 0.147 3.853 10 C -0.257 4.257 11 C -0.036 4.036 12 C -0.243 4.243 13 C 0.000 4.000 14 C -0.787 4.787 15 S 2.708 3.292 16 O -0.983 6.983 17 O -0.987 6.987 18 N -1.042 6.042 19 C 0.167 3.833 20 C -0.227 4.227 21 C 0.113 3.887 22 F -0.139 7.139 23 C -0.150 4.150 24 C -0.076 4.076 25 C 0.065 3.935 26 O -0.495 6.495 27 H 0.303 0.697 28 H 0.112 0.888 29 H 0.142 0.858 30 H 0.141 0.859 31 H 0.131 0.869 32 H 0.433 0.567 33 H 0.141 0.859 34 H 0.177 0.823 35 H 0.183 0.817 36 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.644 -10.058 5.332 12.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.166 4.166 3 Si 0.781 3.219 4 H -0.168 1.168 5 H -0.178 1.178 6 H -0.199 1.199 7 C -0.493 4.493 8 H 0.101 0.899 9 C 0.143 3.857 10 C -0.277 4.277 11 C -0.054 4.054 12 C -0.263 4.263 13 C -0.019 4.019 14 C -0.882 4.882 15 S 2.806 3.194 16 O -0.974 6.974 17 O -0.977 6.977 18 N -0.789 5.789 19 C 0.069 3.931 20 C -0.249 4.249 21 C 0.093 3.907 22 F -0.118 7.118 23 C -0.170 4.170 24 C -0.095 4.095 25 C 0.016 3.984 26 O -0.307 6.307 27 H 0.114 0.886 28 H 0.130 0.870 29 H 0.159 0.841 30 H 0.159 0.841 31 H 0.148 0.852 32 H 0.271 0.729 33 H 0.159 0.841 34 H 0.195 0.805 35 H 0.201 0.799 36 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 4.405 -9.772 4.795 11.743 hybrid contribution -0.113 1.220 -0.069 1.227 sum 4.291 -8.552 4.726 10.672 Atomic orbital electron populations 1.69633 1.09005 1.32488 1.32071 1.26843 0.95534 1.04356 0.89906 0.85639 0.79714 0.76333 0.80250 1.16850 1.17836 1.19908 1.19905 0.93288 0.97015 1.39052 0.89857 1.17214 0.91459 0.89751 0.87304 1.21403 0.97136 1.03789 1.05359 1.21324 0.92554 0.96254 0.95282 1.21019 1.00547 0.99444 1.05270 1.20694 0.92187 0.96339 0.92721 1.29914 1.03903 1.23711 1.30676 1.00917 0.72254 0.72948 0.73299 1.93540 1.72770 1.73852 1.57189 1.93479 1.54860 1.65520 1.83831 1.53390 1.23582 1.57120 1.44800 1.17718 0.94679 0.91804 0.88948 1.21499 1.01142 1.03579 0.98679 1.17471 0.86006 0.95720 0.91533 1.91483 1.52119 1.92423 1.75771 1.21336 0.96452 0.95927 1.03262 1.21465 0.94925 1.00001 0.93097 1.18308 0.90365 0.92562 0.97146 1.84830 1.28328 1.73260 1.44258 0.88579 0.87034 0.84064 0.84101 0.85172 0.72900 0.84136 0.80545 0.79945 0.73338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.36 13.93 21.83 0.30 -41.06 16 2 C 0.05 2.74 5.44 85.26 0.46 3.21 16 3 Si 0.96 40.52 24.42 68.60 1.68 42.19 16 4 H -0.24 -9.31 6.60 99.48 0.66 -8.66 16 5 H -0.25 -11.27 6.80 99.48 0.68 -10.59 16 6 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 7 C -0.47 -24.49 8.23 23.46 0.19 -24.30 16 8 H 0.08 4.47 5.76 -2.91 -0.02 4.46 16 9 C 0.15 7.23 5.16 -21.29 -0.11 7.12 16 10 C -0.26 -11.45 7.12 22.73 0.16 -11.29 16 11 C -0.04 -1.35 10.02 22.22 0.22 -1.13 16 12 C -0.24 -8.92 10.05 22.46 0.23 -8.69 16 13 C 0.00 0.01 7.76 22.22 0.17 0.18 16 14 C -0.79 -35.99 4.26 22.73 0.10 -35.89 16 15 S 2.71 119.15 4.54 -56.49 -0.26 118.89 16 16 O -0.98 -49.60 16.70 -128.00 -2.14 -51.74 16 17 O -0.99 -43.30 16.34 -128.00 -2.09 -45.39 16 18 N -1.04 -39.65 4.77 -51.07 -0.24 -39.90 16 19 C 0.17 5.78 6.25 38.22 0.24 6.02 16 20 C -0.23 -8.15 8.90 22.43 0.20 -7.95 16 21 C 0.11 3.38 7.29 22.36 0.16 3.54 16 22 F -0.14 -4.26 17.26 44.97 0.78 -3.48 16 23 C -0.15 -3.24 10.02 22.33 0.22 -3.02 16 24 C -0.08 -1.55 9.98 22.34 0.22 -1.32 16 25 C 0.07 1.76 6.72 22.58 0.15 1.92 16 26 O -0.49 -11.59 13.00 -94.19 -1.22 -12.81 16 27 H 0.30 13.76 8.30 -92.71 -0.77 12.99 16 28 H 0.11 4.80 4.31 -2.91 -0.01 4.79 16 29 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 30 H 0.14 4.13 8.06 -2.91 -0.02 4.10 16 31 H 0.13 4.85 7.33 -2.91 -0.02 4.83 16 32 H 0.43 15.69 8.19 -96.74 -0.79 14.90 16 33 H 0.14 5.56 3.54 -2.91 -0.01 5.55 16 34 H 0.18 2.46 8.06 -2.91 -0.02 2.44 16 35 H 0.18 2.21 8.06 -2.91 -0.02 2.18 16 36 H 0.41 5.72 9.07 -74.06 -0.67 5.05 16 Total: -1.00 -67.94 317.40 -0.92 -68.86 By element: Atomic # 1 Polarization: 36.40 SS G_CDS: -0.35 Total: 36.05 kcal Atomic # 6 Polarization: -74.24 SS G_CDS: 2.63 Total: -71.61 kcal Atomic # 7 Polarization: -81.01 SS G_CDS: 0.06 Total: -80.95 kcal Atomic # 8 Polarization: -104.49 SS G_CDS: -5.45 Total: -109.95 kcal Atomic # 9 Polarization: -4.26 SS G_CDS: 0.78 Total: -3.48 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 1.68 Total: 42.19 kcal Atomic # 16 Polarization: 119.15 SS G_CDS: -0.26 Total: 118.89 kcal Total: -67.94 -0.92 -68.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355847394.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.069 kcal (2) G-P(sol) polarization free energy of solvation -67.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds