Wall clock time and date at job start Tue Mar 31 2020 19:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.39459 * 126.25789 * 2 1 4 4 C 1.38610 * 133.35925 * 359.96480 * 3 2 1 5 5 C 1.38133 * 119.82388 * 180.02562 * 4 3 2 6 6 C 1.38411 * 120.18291 * 359.97438 * 5 4 3 7 7 S 1.76202 * 119.84480 * 180.02562 * 6 5 4 8 8 O 1.42096 * 106.40587 * 203.54723 * 7 6 5 9 9 O 1.42108 * 106.39973 * 336.46450 * 7 6 5 10 10 N 1.65597 * 107.21758 * 90.00115 * 7 6 5 11 11 C 1.36935 * 120.00566 * 270.00225 * 10 7 6 12 12 H 1.08003 * 119.99770 * 326.42221 * 11 10 7 13 13 C 1.38811 * 120.00420 * 146.41511 * 11 10 7 14 14 N 1.31621 * 119.99984 * 156.60123 * 13 11 10 15 15 Si 1.86800 * 120.00055 * 336.61037 * 13 11 10 16 16 H 1.48493 * 109.47439 * 95.44046 * 15 13 11 17 17 H 1.48499 * 109.47008 * 215.44602 * 15 13 11 18 18 H 1.48503 * 109.46873 * 335.44119 * 15 13 11 19 19 C 1.46504 * 119.99593 * 90.00295 * 10 7 6 20 20 C 1.47193 * 109.47035 * 94.79574 * 19 10 7 21 21 N 9.50083 * 147.04932 * 24.50594 * 2 1 3 22 22 C 1.38121 * 120.31079 * 359.76532 * 6 5 4 23 23 C 1.38604 * 119.92055 * 0.48166 * 22 6 5 24 24 O 1.35563 * 133.00086 * 179.83871 * 23 22 6 25 25 C 1.34224 * 109.18057 * 179.71255 * 24 23 22 26 26 O 1.21601 * 125.27620 * 179.97438 * 25 24 23 27 27 H 1.09004 * 109.46924 * 89.99828 * 1 2 3 28 28 H 1.08995 * 109.47419 * 209.99795 * 1 2 3 29 29 H 1.09000 * 109.46577 * 330.00513 * 1 2 3 30 30 H 1.08004 * 120.09155 * 0.02562 * 4 3 2 31 31 H 1.08001 * 119.90715 * 180.02562 * 5 4 3 32 32 H 0.96996 * 120.00010 * 180.02562 * 14 13 11 33 33 H 1.09004 * 109.46869 * 214.79068 * 19 10 7 34 34 H 1.08996 * 109.47359 * 334.79170 * 19 10 7 35 35 H 1.08003 * 120.03479 * 179.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2899 1.1245 0.0000 4 6 2.0400 2.4879 -0.0006 5 6 3.0950 3.3797 -0.0010 6 6 4.3988 2.9151 -0.0001 7 16 5.7378 4.0605 0.0001 8 8 6.8553 3.3716 -0.5437 9 8 5.2305 5.2709 -0.5450 10 7 6.1095 4.3797 1.5819 11 6 5.4923 5.4128 2.2354 12 1 5.2197 6.3074 1.6952 13 6 5.2170 5.3102 3.5920 14 7 5.0657 6.3983 4.3169 15 14 5.0614 3.6279 4.3890 16 1 6.3619 3.2450 4.9949 17 1 4.0181 3.6749 5.4447 18 1 4.6804 2.6265 3.3607 19 6 7.0987 3.5567 2.2823 20 6 8.4188 4.2032 2.2036 21 7 9.4376 4.7021 2.1435 22 6 4.6553 1.5579 0.0059 23 6 3.6033 0.6555 0.0011 24 8 3.5470 -0.6989 0.0020 25 6 2.2621 -1.0869 0.0018 26 8 1.8767 -2.2403 0.0021 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3632 0.8901 0.5138 30 1 1.0233 2.8522 -0.0008 31 1 2.9019 4.4423 -0.0010 32 1 4.8736 6.3267 5.2650 33 1 6.8081 3.4501 3.3274 34 1 7.1478 2.5725 1.8166 35 1 5.6744 1.2004 0.0061 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357087473.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:11 Heat of formation + Delta-G solvation = -27.822759 kcal Electronic energy + Delta-G solvation = -27019.653902 eV Core-core repulsion = 22919.935792 eV Total energy + Delta-G solvation = -4099.718111 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.061 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.38862 -38.67963 -37.55849 -37.19402 -36.29041 -36.09286 -35.15738 -34.85452 -32.49817 -30.88884 -30.05773 -28.09237 -27.93076 -24.52293 -23.63841 -23.17740 -21.93924 -19.43452 -18.77865 -18.38647 -17.98392 -17.66128 -17.24832 -16.72592 -16.53032 -15.89817 -15.62760 -15.26548 -14.80656 -14.46557 -14.17727 -14.09118 -13.82382 -13.52428 -13.51296 -13.20481 -13.14838 -12.84145 -12.67695 -12.31895 -12.13681 -11.79821 -11.58509 -11.39796 -11.24960 -11.24563 -11.12637 -11.02505 -10.90775 -10.62130 -10.46533 -10.27607 -9.53675 -8.92965 -8.75697 -8.42704 -7.01942 -4.47195 0.65979 1.04303 1.16842 1.86794 2.26408 2.67973 2.70024 2.89359 2.91600 3.09572 3.30697 3.32887 3.66016 3.96992 4.14890 4.27749 4.32315 4.46736 4.69453 4.75019 4.87689 4.90548 5.10589 5.17304 5.22225 5.29659 5.37298 5.51691 5.56600 5.71061 5.96035 6.02104 6.16529 6.36764 6.44715 7.02177 7.05019 7.41392 7.86676 8.05176 8.45601 8.48373 10.03416 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.014371 B = 0.004587 C = 0.004299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.875216 B = 6102.753548 C = 6511.389779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.551 5.551 3 C 0.099 3.901 4 C -0.124 4.124 5 C 0.002 3.998 6 C -0.648 4.648 7 S 2.540 3.460 8 O -0.988 6.988 9 O -0.957 6.957 10 N -0.821 5.821 11 C -0.255 4.255 12 H 0.136 0.864 13 C 0.068 3.932 14 N -0.804 5.804 15 Si 0.859 3.141 16 H -0.259 1.259 17 H -0.275 1.275 18 H -0.247 1.247 19 C 0.208 3.792 20 C 0.217 3.783 21 N -0.433 5.433 22 C 0.011 3.989 23 C 0.007 3.993 24 O -0.234 6.234 25 C 0.635 3.365 26 O -0.493 6.493 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.139 0.861 31 H 0.158 0.842 32 H 0.288 0.712 33 H 0.100 0.900 34 H 0.119 0.881 35 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.667 -8.213 -2.241 12.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.283 5.283 3 C 0.000 4.000 4 C -0.145 4.145 5 C -0.017 4.017 6 C -0.726 4.726 7 S 2.641 3.359 8 O -0.978 6.978 9 O -0.947 6.947 10 N -0.645 5.645 11 C -0.404 4.404 12 H 0.153 0.847 13 C -0.150 4.150 14 N -0.439 5.439 15 Si 0.685 3.315 16 H -0.186 1.186 17 H -0.201 1.201 18 H -0.170 1.170 19 C 0.079 3.921 20 C -0.103 4.103 21 N -0.111 5.111 22 C -0.009 4.009 23 C -0.040 4.040 24 O -0.139 6.139 25 C 0.390 3.610 26 O -0.377 6.377 27 H 0.093 0.907 28 H 0.109 0.891 29 H 0.108 0.892 30 H 0.157 0.843 31 H 0.176 0.824 32 H 0.098 0.902 33 H 0.117 0.883 34 H 0.136 0.864 35 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -7.959 -8.133 -3.206 11.823 hybrid contribution -1.523 -1.578 0.884 2.364 sum -9.482 -9.711 -2.322 13.770 Atomic orbital electron populations 1.21829 0.73644 1.04873 1.03662 1.45785 1.08353 1.04982 1.69198 1.18712 0.88923 0.90049 1.02300 1.20233 1.00897 0.87935 1.05466 1.20882 0.89868 1.00720 0.90275 1.32350 1.18676 1.09670 1.11926 1.11167 0.73749 0.73843 0.77102 1.93409 1.50397 1.75123 1.78848 1.93426 1.80468 1.43060 1.77716 1.54064 1.41080 1.35998 1.33329 1.19521 1.35966 0.92051 0.92895 0.84716 1.25773 0.94348 0.98003 0.96918 1.69806 1.37048 1.28736 1.08316 0.87176 0.79114 0.84436 0.80814 1.18609 1.20124 1.17038 1.18810 0.79312 0.93179 1.00805 1.29427 0.94396 0.93669 0.92844 1.81042 1.13055 1.08259 1.08777 1.19758 0.97665 0.89206 0.94291 1.19084 0.94723 0.80178 1.10010 1.84985 1.27403 1.21093 1.80424 1.18553 0.78757 0.85336 0.78340 1.91137 1.74382 1.16096 1.56039 0.90716 0.89099 0.89243 0.84316 0.82440 0.90158 0.88263 0.86371 0.82965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.76 11.07 59.85 0.66 1.42 16 2 N -0.55 -6.80 3.21 -126.43 -0.41 -7.21 16 3 C 0.10 1.33 6.84 -83.80 -0.57 0.75 16 4 C -0.12 -1.51 10.04 -39.48 -0.40 -1.91 16 5 C 0.00 0.03 9.51 -39.56 -0.38 -0.34 16 6 C -0.65 -10.52 5.97 -39.56 -0.24 -10.76 16 7 S 2.54 48.59 5.60 -107.50 -0.60 47.99 16 8 O -0.99 -20.03 16.25 -57.17 -0.93 -20.96 16 9 O -0.96 -20.68 16.15 -57.17 -0.92 -21.61 16 10 N -0.82 -15.90 2.51 -62.77 -0.16 -16.06 16 11 C -0.26 -5.46 9.59 -15.06 -0.14 -5.60 16 12 H 0.14 3.15 7.53 -52.48 -0.40 2.76 16 13 C 0.07 1.43 5.33 -17.43 -0.09 1.34 16 14 N -0.80 -18.32 13.97 55.49 0.78 -17.55 16 15 Si 0.86 15.40 24.94 -169.99 -4.24 11.16 16 16 H -0.26 -4.36 6.68 56.52 0.38 -3.99 16 17 H -0.28 -5.04 7.11 56.52 0.40 -4.64 16 18 H -0.25 -4.10 7.11 56.52 0.40 -3.70 16 19 C 0.21 3.57 4.78 -6.83 -0.03 3.53 16 20 C 0.22 4.18 15.73 -20.76 -0.33 3.86 16 21 N -0.43 -9.05 18.54 42.15 0.78 -8.27 16 22 C 0.01 0.16 9.53 -39.49 -0.38 -0.22 16 23 C 0.01 0.10 7.35 -38.99 -0.29 -0.19 16 24 O -0.23 -3.66 10.72 -21.98 -0.24 -3.90 16 25 C 0.63 9.59 9.07 54.06 0.49 10.08 16 26 O -0.49 -8.34 17.81 -19.01 -0.34 -8.68 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.09 0.65 8.06 -51.93 -0.42 0.23 16 29 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.14 1.20 8.06 -52.48 -0.42 0.77 16 31 H 0.16 2.13 7.60 -52.49 -0.40 1.73 16 32 H 0.29 6.00 8.31 -40.82 -0.34 5.66 16 33 H 0.10 1.64 2.63 -51.93 -0.14 1.50 16 34 H 0.12 1.56 7.62 -51.93 -0.40 1.17 16 35 H 0.15 2.06 7.61 -52.48 -0.40 1.66 16 LS Contribution 329.08 15.07 4.96 4.96 Total: -1.00 -29.31 329.08 -5.57 -34.89 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -2.57 Total: 3.26 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: -1.69 Total: 1.97 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: 0.99 Total: -49.09 kcal Atomic # 8 Polarization: -52.72 SS G_CDS: -2.43 Total: -55.15 kcal Atomic # 14 Polarization: 15.40 SS G_CDS: -4.24 Total: 11.16 kcal Atomic # 16 Polarization: 48.59 SS G_CDS: -0.60 Total: 47.99 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.31 -5.57 -34.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357087473.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.065 kcal (2) G-P(sol) polarization free energy of solvation -29.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds