Wall clock time and date at job start Tue Mar 31 2020 19:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.39459 * 126.25789 * 2 1 4 4 C 1.38610 * 133.35925 * 359.96480 * 3 2 1 5 5 C 1.38133 * 119.82388 * 180.02562 * 4 3 2 6 6 C 1.38411 * 120.18291 * 359.97438 * 5 4 3 7 7 S 1.76202 * 119.84480 * 180.02562 * 6 5 4 8 8 O 1.42096 * 106.40587 * 203.54723 * 7 6 5 9 9 O 1.42108 * 106.39973 * 336.46450 * 7 6 5 10 10 N 1.65597 * 107.21758 * 90.00115 * 7 6 5 11 11 C 1.36935 * 120.00566 * 270.00225 * 10 7 6 12 12 H 1.08003 * 119.99770 * 326.42221 * 11 10 7 13 13 C 1.38811 * 120.00420 * 146.41511 * 11 10 7 14 14 N 1.31621 * 119.99984 * 156.60123 * 13 11 10 15 15 Si 1.86800 * 120.00055 * 336.61037 * 13 11 10 16 16 H 1.48493 * 109.47439 * 95.44046 * 15 13 11 17 17 H 1.48499 * 109.47008 * 215.44602 * 15 13 11 18 18 H 1.48503 * 109.46873 * 335.44119 * 15 13 11 19 19 C 1.46504 * 119.99593 * 90.00295 * 10 7 6 20 20 C 1.47193 * 109.47035 * 94.79574 * 19 10 7 21 21 N 9.50083 * 147.04932 * 24.50594 * 2 1 3 22 22 C 1.38121 * 120.31079 * 359.76532 * 6 5 4 23 23 C 1.38604 * 119.92055 * 0.48166 * 22 6 5 24 24 O 1.35563 * 133.00086 * 179.83871 * 23 22 6 25 25 C 1.34224 * 109.18057 * 179.71255 * 24 23 22 26 26 O 1.21601 * 125.27620 * 179.97438 * 25 24 23 27 27 H 1.09004 * 109.46924 * 89.99828 * 1 2 3 28 28 H 1.08995 * 109.47419 * 209.99795 * 1 2 3 29 29 H 1.09000 * 109.46577 * 330.00513 * 1 2 3 30 30 H 1.08004 * 120.09155 * 0.02562 * 4 3 2 31 31 H 1.08001 * 119.90715 * 180.02562 * 5 4 3 32 32 H 0.96996 * 120.00010 * 180.02562 * 14 13 11 33 33 H 1.09004 * 109.46869 * 214.79068 * 19 10 7 34 34 H 1.08996 * 109.47359 * 334.79170 * 19 10 7 35 35 H 1.08003 * 120.03479 * 179.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2899 1.1245 0.0000 4 6 2.0400 2.4879 -0.0006 5 6 3.0950 3.3797 -0.0010 6 6 4.3988 2.9151 -0.0001 7 16 5.7378 4.0605 0.0001 8 8 6.8553 3.3716 -0.5437 9 8 5.2305 5.2709 -0.5450 10 7 6.1095 4.3797 1.5819 11 6 5.4923 5.4128 2.2354 12 1 5.2197 6.3074 1.6952 13 6 5.2170 5.3102 3.5920 14 7 5.0657 6.3983 4.3169 15 14 5.0614 3.6279 4.3890 16 1 6.3619 3.2450 4.9949 17 1 4.0181 3.6749 5.4447 18 1 4.6804 2.6265 3.3607 19 6 7.0987 3.5567 2.2823 20 6 8.4188 4.2032 2.2036 21 7 9.4376 4.7021 2.1435 22 6 4.6553 1.5579 0.0059 23 6 3.6033 0.6555 0.0011 24 8 3.5470 -0.6989 0.0020 25 6 2.2621 -1.0869 0.0018 26 8 1.8767 -2.2403 0.0021 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3632 0.8901 0.5138 30 1 1.0233 2.8522 -0.0008 31 1 2.9019 4.4423 -0.0010 32 1 4.8736 6.3267 5.2650 33 1 6.8081 3.4501 3.3274 34 1 7.1478 2.5725 1.8166 35 1 5.6744 1.2004 0.0061 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357087473.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:10 Heat of formation + Delta-G solvation = -48.343359 kcal Electronic energy + Delta-G solvation = -27020.543742 eV Core-core repulsion = 22919.935792 eV Total energy + Delta-G solvation = -4100.607951 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.061 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -44.49885 -39.84918 -38.70178 -38.69471 -38.01225 -37.15291 -36.72046 -36.60011 -34.01067 -32.00496 -31.13537 -29.39431 -28.94551 -26.10624 -24.78782 -24.36823 -22.93431 -20.79927 -20.30692 -19.81891 -19.07404 -18.77018 -18.63382 -18.19111 -17.90421 -17.37202 -16.85948 -16.41910 -16.08879 -15.49223 -15.30801 -15.25350 -15.21906 -14.93339 -14.79497 -14.59267 -14.39528 -14.19440 -13.70500 -13.50934 -13.36277 -13.31863 -12.97271 -12.93794 -12.79820 -12.66672 -12.60830 -12.43623 -12.11974 -11.96201 -11.87698 -11.66586 -11.00447 -10.31317 -10.01138 -9.56418 -8.52509 -6.12047 -0.60756 -0.31523 -0.07116 0.87050 1.13722 1.29646 1.45458 1.52843 1.56007 1.63396 1.80733 2.11555 2.22792 2.48446 2.81973 2.94267 3.09032 3.18761 3.35044 3.53484 3.77317 3.98582 4.05650 4.14379 4.23927 4.35105 4.39131 4.46287 4.67462 4.69267 4.83180 4.91290 4.96803 5.08988 5.32328 5.55828 5.91691 6.22556 6.32763 6.53531 6.90844 6.95745 8.58542 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.014371 B = 0.004587 C = 0.004299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.875216 B = 6102.753548 C = 6511.389779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.539 5.539 3 C 0.111 3.889 4 C -0.105 4.105 5 C -0.002 4.002 6 C -0.663 4.663 7 S 2.607 3.393 8 O -0.993 6.993 9 O -0.982 6.982 10 N -0.839 5.839 11 C -0.294 4.294 12 H 0.094 0.906 13 C 0.038 3.962 14 N -0.871 5.871 15 Si 0.896 3.104 16 H -0.243 1.243 17 H -0.284 1.284 18 H -0.219 1.219 19 C 0.195 3.805 20 C 0.226 3.774 21 N -0.470 5.470 22 C 0.012 3.988 23 C -0.010 4.010 24 O -0.244 6.244 25 C 0.629 3.371 26 O -0.517 6.517 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.119 0.881 30 H 0.184 0.816 31 H 0.164 0.836 32 H 0.287 0.713 33 H 0.111 0.889 34 H 0.163 0.837 35 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.727 -10.935 -3.469 16.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.270 5.270 3 C 0.011 3.989 4 C -0.126 4.126 5 C -0.022 4.022 6 C -0.748 4.748 7 S 2.708 3.292 8 O -0.983 6.983 9 O -0.973 6.973 10 N -0.665 5.665 11 C -0.436 4.436 12 H 0.112 0.888 13 C -0.174 4.174 14 N -0.507 5.507 15 Si 0.718 3.282 16 H -0.169 1.169 17 H -0.211 1.211 18 H -0.141 1.141 19 C 0.067 3.933 20 C -0.094 4.094 21 N -0.150 5.150 22 C -0.008 4.008 23 C -0.057 4.057 24 O -0.150 6.150 25 C 0.385 3.615 26 O -0.403 6.403 27 H 0.112 0.888 28 H 0.113 0.887 29 H 0.137 0.863 30 H 0.202 0.798 31 H 0.181 0.819 32 H 0.097 0.903 33 H 0.128 0.872 34 H 0.180 0.820 35 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -10.003 -10.747 -4.339 15.310 hybrid contribution -0.984 -0.965 0.871 1.630 sum -10.988 -11.712 -3.468 16.429 Atomic orbital electron populations 1.22308 0.70712 1.06607 1.05517 1.46013 1.09787 1.03594 1.67605 1.18925 0.88549 0.90750 1.00664 1.20540 1.02338 0.86720 1.03006 1.21097 0.89716 1.01687 0.89701 1.31459 1.17903 1.09189 1.16231 1.06970 0.73743 0.73449 0.75025 1.93441 1.51140 1.75429 1.78319 1.93437 1.81237 1.44824 1.77758 1.53487 1.42804 1.37771 1.32446 1.18869 1.38401 0.92858 0.93437 0.88828 1.26162 0.93710 1.00657 0.96862 1.69911 1.41400 1.30852 1.08525 0.86593 0.79629 0.81473 0.80516 1.16869 1.21094 1.14071 1.19416 0.77481 0.94431 1.02017 1.30027 0.94641 0.92929 0.91780 1.81037 1.14426 1.09428 1.10068 1.19822 0.98766 0.88646 0.93547 1.19136 0.95546 0.80092 1.10899 1.84947 1.28164 1.21459 1.80430 1.18679 0.78775 0.85649 0.78444 1.91120 1.74686 1.17191 1.57265 0.88821 0.88722 0.86293 0.79830 0.81850 0.90331 0.87168 0.81955 0.81475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.89 11.07 127.77 1.41 2.31 16 2 N -0.54 -10.97 3.21 -784.50 -2.52 -13.48 16 3 C 0.11 2.46 6.84 38.31 0.26 2.72 16 4 C -0.11 -2.01 10.04 22.33 0.22 -1.78 16 5 C 0.00 -0.05 9.51 22.29 0.21 0.16 16 6 C -0.66 -19.39 5.97 22.28 0.13 -19.25 16 7 S 2.61 95.26 5.60 -56.49 -0.32 94.94 16 8 O -0.99 -37.75 16.25 -128.00 -2.08 -39.82 16 9 O -0.98 -41.90 16.15 -128.00 -2.07 -43.97 16 10 N -0.84 -31.96 2.51 -352.52 -0.88 -32.84 16 11 C -0.29 -13.05 9.59 84.03 0.81 -12.25 16 12 H 0.09 4.75 7.53 -2.91 -0.02 4.73 16 13 C 0.04 1.65 5.33 84.86 0.45 2.10 16 14 N -0.87 -42.30 13.97 21.65 0.30 -41.99 16 15 Si 0.90 30.69 24.94 68.60 1.71 32.40 16 16 H -0.24 -7.58 6.68 99.48 0.66 -6.91 16 17 H -0.28 -10.08 7.11 99.48 0.71 -9.38 16 18 H -0.22 -6.40 7.11 99.48 0.71 -5.69 16 19 C 0.20 6.36 4.78 84.57 0.40 6.76 16 20 C 0.23 8.62 15.73 89.44 1.41 10.03 16 21 N -0.47 -19.81 18.54 20.00 0.37 -19.44 16 22 C 0.01 0.32 9.53 22.33 0.21 0.53 16 23 C -0.01 -0.27 7.35 22.65 0.17 -0.10 16 24 O -0.24 -6.96 10.72 8.54 0.09 -6.86 16 25 C 0.63 17.13 9.07 129.79 1.18 18.31 16 26 O -0.52 -16.37 17.81 19.18 0.34 -16.03 16 27 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 28 H 0.09 0.98 8.06 -2.39 -0.02 0.96 16 29 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.18 1.89 8.06 -2.91 -0.02 1.87 16 31 H 0.16 3.97 7.60 -2.91 -0.02 3.95 16 32 H 0.29 12.82 8.31 -92.71 -0.77 12.05 16 33 H 0.11 3.43 2.63 -2.39 -0.01 3.42 16 34 H 0.16 3.72 7.62 -2.39 -0.02 3.70 16 35 H 0.17 3.87 7.61 -2.91 -0.02 3.85 16 Total: -1.00 -66.76 329.08 2.96 -63.80 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 1.14 Total: 13.76 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: 6.87 Total: 9.54 kcal Atomic # 7 Polarization: -105.03 SS G_CDS: -2.73 Total: -107.76 kcal Atomic # 8 Polarization: -102.98 SS G_CDS: -3.71 Total: -106.69 kcal Atomic # 14 Polarization: 30.69 SS G_CDS: 1.71 Total: 32.40 kcal Atomic # 16 Polarization: 95.26 SS G_CDS: -0.32 Total: 94.94 kcal Total: -66.76 2.96 -63.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357087473.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.458 kcal (2) G-P(sol) polarization free energy of solvation -66.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds