Wall clock time and date at job start Tue Mar 31 2020 20:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86799 * 119.99562 * 2 1 4 4 H 1.48502 * 109.47272 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47429 * 300.00150 * 3 2 1 6 6 H 1.48506 * 109.46928 * 60.00199 * 3 2 1 7 7 C 1.38797 * 120.00280 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99755 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99963 * 0.02562 * 7 2 1 10 10 C 1.81006 * 99.99766 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47024 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99897 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00231 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00187 * 179.97438 * 13 11 10 15 15 C 1.50703 * 109.47056 * 180.02562 * 14 13 11 16 16 N 1.30974 * 126.44097 * 90.29753 * 15 14 13 17 17 C 1.35211 * 105.58069 * 180.11056 * 16 15 14 18 18 C 1.48431 * 126.41199 * 179.88089 * 17 16 15 19 19 C 1.39357 * 120.10385 * 179.71055 * 18 17 16 20 20 C 1.38009 * 119.92656 * 180.30283 * 19 18 17 21 21 C 1.38303 * 120.14689 * 359.43918 * 20 19 18 22 22 C 1.38524 * 120.21696 * 0.56308 * 21 20 19 23 23 F 1.35099 * 119.96506 * 179.74257 * 22 21 20 24 24 C 1.38274 * 120.06387 * 359.72027 * 22 21 20 25 25 N 1.30762 * 107.17529 * 359.61217 * 17 16 15 26 26 O 1.21293 * 110.09284 * 0.24918 * 25 17 16 27 27 H 0.96991 * 120.00130 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.47160 * 59.99842 * 10 9 7 29 29 H 1.09000 * 109.46919 * 299.99731 * 10 9 7 30 30 H 0.96999 * 119.99818 * 0.02562 * 13 11 10 31 31 H 1.09003 * 109.46952 * 60.00416 * 14 13 11 32 32 H 1.08992 * 109.47452 * 300.00062 * 14 13 11 33 33 H 1.08002 * 120.03349 * 0.02562 * 19 18 17 34 34 H 1.08000 * 119.92337 * 179.72518 * 20 19 18 35 35 H 1.07999 * 119.89262 * 180.26056 * 21 20 19 36 36 H 1.07998 * 120.06935 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7103 1.3466 0.0006 5 1 1.8914 2.3966 -1.2125 6 1 1.8914 2.3964 1.2126 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2019 0.0001 9 16 1.1295 -2.7279 0.0005 10 6 2.5161 -3.8913 0.0005 11 6 1.9878 -5.3027 0.0012 12 8 0.7915 -5.5023 0.0011 13 7 2.8445 -6.3430 0.0008 14 6 2.3309 -7.7150 0.0019 15 6 3.4854 -8.6836 0.0018 16 7 4.0785 -9.1872 1.0554 17 6 5.0494 -9.9957 0.5738 18 6 6.0061 -10.7983 1.3762 19 6 6.9552 -11.5959 0.7398 20 6 7.8388 -12.3455 1.4895 21 6 7.7921 -12.2979 2.8709 22 6 6.8511 -11.5071 3.5098 23 9 6.8067 -11.4685 4.8595 24 6 5.9577 -10.7570 2.7674 25 7 4.9840 -9.9428 -0.7311 26 8 4.0926 -9.1949 -1.0736 27 1 -0.4850 0.8400 0.0004 28 1 3.1247 -3.7312 0.8905 29 1 3.1247 -3.7312 -0.8895 30 1 3.8013 -6.1833 0.0004 31 1 1.7214 -7.8755 -0.8874 32 1 1.7232 -7.8747 0.8925 33 1 6.9962 -11.6308 -0.3389 34 1 8.5715 -12.9670 0.9962 35 1 8.4883 -12.8829 3.4535 36 1 5.2238 -10.1408 3.2654 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000373236506.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:02 Heat of formation + Delta-G solvation = 17.768730 kcal Electronic energy + Delta-G solvation = -24008.716685 eV Core-core repulsion = 19923.348359 eV Total energy + Delta-G solvation = -4085.368326 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.068 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.37708 -46.06916 -39.61981 -39.39977 -36.44875 -35.31322 -33.10872 -32.46342 -31.59301 -30.95467 -29.86578 -27.11661 -25.50760 -25.46994 -23.79221 -23.03633 -21.63500 -20.73113 -18.82098 -18.58287 -17.94632 -17.49219 -16.81999 -16.77965 -16.42977 -16.21023 -16.08255 -15.53377 -15.20036 -14.83415 -14.50202 -14.26259 -14.03440 -13.75453 -13.60765 -13.44629 -13.23150 -12.90124 -12.63273 -12.44870 -12.20678 -11.94285 -11.87507 -11.56287 -11.09329 -11.06347 -10.98545 -10.78199 -9.85831 -9.65983 -9.51657 -9.27648 -9.24514 -9.10079 -8.29795 -6.55067 -6.25486 -3.96593 0.00761 0.57355 0.68463 1.82966 2.18173 2.80094 2.88600 2.96706 3.05799 3.19802 3.25335 3.28851 3.31772 3.60476 3.79045 4.16309 4.18482 4.26288 4.41894 4.49045 4.71084 4.79501 4.97140 5.02731 5.10186 5.13790 5.26423 5.35069 5.42040 5.52661 5.57954 5.66299 5.72828 5.79918 6.05328 6.17934 6.20058 7.36580 7.56928 7.58930 8.31847 8.34764 9.20314 10.81967 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.018517 B = 0.001831 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.800114 B =15291.759306 C =15945.218462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.536 4.536 8 H 0.074 0.926 9 S -0.057 6.057 10 C -0.153 4.153 11 C 0.540 3.460 12 O -0.509 6.509 13 N -0.737 5.737 14 C 0.217 3.783 15 C 0.179 3.821 16 N -0.455 5.455 17 C 0.207 3.793 18 C 0.008 3.992 19 C -0.094 4.094 20 C -0.091 4.091 21 C -0.135 4.135 22 C 0.099 3.901 23 F -0.133 7.133 24 C -0.111 4.111 25 N -0.365 5.365 26 O 0.097 5.903 27 H 0.268 0.732 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.403 0.597 31 H 0.110 0.890 32 H 0.117 0.883 33 H 0.139 0.861 34 H 0.143 0.857 35 H 0.142 0.858 36 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.739 -25.970 2.078 30.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.684 4.684 8 H 0.092 0.908 9 S 0.170 5.830 10 C -0.304 4.304 11 C 0.327 3.673 12 O -0.381 6.381 13 N -0.396 5.396 14 C 0.091 3.909 15 C -0.042 4.042 16 N -0.188 5.188 17 C -0.063 4.063 18 C 0.006 3.994 19 C -0.114 4.114 20 C -0.109 4.109 21 C -0.155 4.155 22 C 0.080 3.920 23 F -0.111 7.111 24 C -0.131 4.131 25 N -0.068 5.068 26 O 0.033 5.967 27 H 0.078 0.922 28 H 0.111 0.889 29 H 0.112 0.888 30 H 0.238 0.762 31 H 0.128 0.872 32 H 0.135 0.865 33 H 0.157 0.843 34 H 0.160 0.840 35 H 0.160 0.840 36 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 14.136 -26.711 2.020 30.288 hybrid contribution 2.331 1.414 0.213 2.735 sum 16.467 -25.297 2.233 30.267 Atomic orbital electron populations 1.70018 1.05942 1.27434 1.46818 1.24997 0.95043 0.99072 0.94476 0.86109 0.79582 0.81827 0.77927 1.19611 1.20546 1.20546 1.22899 0.94969 0.91536 1.59012 0.90791 1.85408 1.04529 0.96362 1.96750 1.23536 1.06913 0.94575 1.05331 1.20355 0.86272 0.85964 0.74701 1.90739 1.15113 1.85308 1.46989 1.45962 1.10716 1.03812 1.79077 1.19648 0.87087 0.77471 1.06680 1.28750 0.97562 0.97535 0.80365 1.72056 1.07427 1.10795 1.28510 1.23783 0.96623 0.98343 0.87565 1.17026 0.94351 0.97008 0.90982 1.21271 0.93885 0.95139 1.01130 1.20963 0.98675 0.98597 0.92693 1.21382 0.98806 0.99621 0.95653 1.17484 0.97804 0.99412 0.77301 1.91547 1.95825 1.95243 1.28531 1.21185 0.99498 0.99645 0.92792 1.74922 1.06467 1.10697 1.14720 1.85347 1.33233 1.42498 1.35602 0.92178 0.88871 0.88842 0.76227 0.87213 0.86475 0.84328 0.83966 0.84021 0.83179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.64 13.22 55.49 0.73 -24.91 16 2 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 3 Si 0.92 21.06 29.55 -169.99 -5.02 16.04 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.54 -14.87 9.50 30.94 0.29 -14.58 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 9 S -0.06 -1.48 20.57 -107.50 -2.21 -3.70 16 10 C -0.15 -2.87 6.16 36.01 0.22 -2.65 16 11 C 0.54 9.01 7.85 -10.99 -0.09 8.92 16 12 O -0.51 -10.36 15.86 5.56 0.09 -10.27 16 13 N -0.74 -8.56 5.55 -61.47 -0.34 -8.90 16 14 C 0.22 2.08 6.30 -5.19 -0.03 2.04 16 15 C 0.18 1.74 7.86 -12.99 -0.10 1.64 16 16 N -0.45 -4.98 11.26 -9.88 -0.11 -5.09 16 17 C 0.21 2.21 7.80 -156.12 -1.22 0.99 16 18 C 0.01 0.07 5.88 -104.90 -0.62 -0.54 16 19 C -0.09 -0.67 9.69 -39.25 -0.38 -1.05 16 20 C -0.09 -0.47 10.03 -39.64 -0.40 -0.87 16 21 C -0.14 -0.79 10.02 -39.45 -0.40 -1.19 16 22 C 0.10 0.80 7.29 -39.46 -0.29 0.51 16 23 F -0.13 -1.20 17.26 2.25 0.04 -1.16 16 24 C -0.11 -0.98 9.68 -39.19 -0.38 -1.35 16 25 N -0.36 -3.95 11.86 30.97 0.37 -3.58 16 26 O 0.10 0.98 11.29 18.04 0.20 1.18 16 27 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 28 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 29 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 30 H 0.40 3.86 8.46 -40.82 -0.35 3.51 16 31 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.12 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.14 0.88 7.87 -52.49 -0.41 0.47 16 34 H 0.14 0.34 8.06 -52.49 -0.42 -0.08 16 35 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 36 H 0.15 1.35 7.88 -52.49 -0.41 0.94 16 LS Contribution 350.30 15.07 5.28 5.28 Total: -1.00 -33.96 350.30 -7.71 -41.67 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -3.25 Total: -0.39 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: -3.48 Total: -6.16 kcal Atomic # 7 Polarization: -43.13 SS G_CDS: 0.65 Total: -42.49 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.29 Total: -9.09 kcal Atomic # 9 Polarization: -1.20 SS G_CDS: 0.04 Total: -1.16 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: -1.48 SS G_CDS: -2.21 Total: -3.70 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.96 -7.71 -41.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373236506.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.438 kcal (2) G-P(sol) polarization free energy of solvation -33.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds