Wall clock time and date at job start Tue Mar 31 2020 20:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86799 * 119.99562 * 2 1 4 4 H 1.48502 * 109.47272 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47429 * 300.00150 * 3 2 1 6 6 H 1.48506 * 109.46928 * 60.00199 * 3 2 1 7 7 C 1.38797 * 120.00280 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99755 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99963 * 0.02562 * 7 2 1 10 10 C 1.81006 * 99.99766 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47024 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99897 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00231 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00187 * 179.97438 * 13 11 10 15 15 C 1.50703 * 109.47056 * 180.02562 * 14 13 11 16 16 N 1.30974 * 126.44097 * 90.29753 * 15 14 13 17 17 C 1.35211 * 105.58069 * 180.11056 * 16 15 14 18 18 C 1.48431 * 126.41199 * 179.88089 * 17 16 15 19 19 C 1.39357 * 120.10385 * 179.71055 * 18 17 16 20 20 C 1.38009 * 119.92656 * 180.30283 * 19 18 17 21 21 C 1.38303 * 120.14689 * 359.43918 * 20 19 18 22 22 C 1.38524 * 120.21696 * 0.56308 * 21 20 19 23 23 F 1.35099 * 119.96506 * 179.74257 * 22 21 20 24 24 C 1.38274 * 120.06387 * 359.72027 * 22 21 20 25 25 N 1.30762 * 107.17529 * 359.61217 * 17 16 15 26 26 O 1.21293 * 110.09284 * 0.24918 * 25 17 16 27 27 H 0.96991 * 120.00130 * 359.97438 * 1 2 3 28 28 H 1.08995 * 109.47160 * 59.99842 * 10 9 7 29 29 H 1.09000 * 109.46919 * 299.99731 * 10 9 7 30 30 H 0.96999 * 119.99818 * 0.02562 * 13 11 10 31 31 H 1.09003 * 109.46952 * 60.00416 * 14 13 11 32 32 H 1.08992 * 109.47452 * 300.00062 * 14 13 11 33 33 H 1.08002 * 120.03349 * 0.02562 * 19 18 17 34 34 H 1.08000 * 119.92337 * 179.72518 * 20 19 18 35 35 H 1.07999 * 119.89262 * 180.26056 * 21 20 19 36 36 H 1.07998 * 120.06935 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7103 1.3466 0.0006 5 1 1.8914 2.3966 -1.2125 6 1 1.8914 2.3964 1.2126 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2019 0.0001 9 16 1.1295 -2.7279 0.0005 10 6 2.5161 -3.8913 0.0005 11 6 1.9878 -5.3027 0.0012 12 8 0.7915 -5.5023 0.0011 13 7 2.8445 -6.3430 0.0008 14 6 2.3309 -7.7150 0.0019 15 6 3.4854 -8.6836 0.0018 16 7 4.0785 -9.1872 1.0554 17 6 5.0494 -9.9957 0.5738 18 6 6.0061 -10.7983 1.3762 19 6 6.9552 -11.5959 0.7398 20 6 7.8388 -12.3455 1.4895 21 6 7.7921 -12.2979 2.8709 22 6 6.8511 -11.5071 3.5098 23 9 6.8067 -11.4685 4.8595 24 6 5.9577 -10.7570 2.7674 25 7 4.9840 -9.9428 -0.7311 26 8 4.0926 -9.1949 -1.0736 27 1 -0.4850 0.8400 0.0004 28 1 3.1247 -3.7312 0.8905 29 1 3.1247 -3.7312 -0.8895 30 1 3.8013 -6.1833 0.0004 31 1 1.7214 -7.8755 -0.8874 32 1 1.7232 -7.8747 0.8925 33 1 6.9962 -11.6308 -0.3389 34 1 8.5715 -12.9670 0.9962 35 1 8.4883 -12.8829 3.4535 36 1 5.2238 -10.1408 3.2654 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000373236506.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:02 Heat of formation + Delta-G solvation = -6.093869 kcal Electronic energy + Delta-G solvation = -24009.751445 eV Core-core repulsion = 19923.348359 eV Total energy + Delta-G solvation = -4086.403086 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.068 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.00948 -46.87390 -40.70832 -40.16779 -37.28082 -36.33651 -34.56878 -34.01402 -32.18540 -31.67625 -31.07929 -28.24113 -27.54461 -26.18336 -24.51001 -23.61999 -22.34842 -21.98473 -20.01311 -19.43875 -19.33421 -18.22272 -17.96359 -17.53844 -17.32198 -17.06803 -16.86451 -16.71883 -16.71329 -15.93891 -15.82103 -15.42332 -14.89395 -14.74236 -14.48968 -14.46835 -14.23818 -14.10372 -13.78810 -13.30988 -13.14329 -12.98491 -12.93692 -12.90470 -12.60073 -12.47144 -12.29544 -11.78777 -11.68405 -11.14491 -11.04011 -10.36781 -10.25801 -10.09881 -9.83135 -8.63759 -8.33644 -6.10499 -0.64299 -0.08520 0.03550 1.08041 1.26035 1.38243 1.42243 1.51111 1.54196 1.61213 2.09881 2.26753 2.30901 2.49643 2.55932 3.00888 3.22275 3.31233 3.49988 3.72629 3.82798 3.92562 3.95983 4.12684 4.17796 4.25773 4.33198 4.47356 4.50716 4.54611 4.71231 4.91350 4.96952 5.09390 5.14303 5.20203 5.44480 5.68710 6.21595 6.26629 6.80133 7.07884 7.08746 8.75555 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.018517 B = 0.001831 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.800114 B =15291.759306 C =15945.218462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.014 3.986 3 Si 0.996 3.004 4 H -0.258 1.258 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.546 4.546 8 H 0.083 0.917 9 S -0.144 6.144 10 C -0.132 4.132 11 C 0.548 3.452 12 O -0.550 6.550 13 N -0.715 5.715 14 C 0.220 3.780 15 C 0.189 3.811 16 N -0.471 5.471 17 C 0.203 3.797 18 C -0.015 4.015 19 C -0.094 4.094 20 C -0.080 4.080 21 C -0.124 4.124 22 C 0.083 3.917 23 F -0.143 7.143 24 C -0.122 4.122 25 N -0.374 5.374 26 O 0.098 5.902 27 H 0.271 0.729 28 H 0.111 0.889 29 H 0.114 0.886 30 H 0.417 0.583 31 H 0.127 0.873 32 H 0.121 0.879 33 H 0.146 0.854 34 H 0.179 0.821 35 H 0.169 0.831 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.663 -27.130 1.772 32.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.191 4.191 3 Si 0.818 3.182 4 H -0.181 1.181 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.694 4.694 8 H 0.101 0.899 9 S 0.083 5.917 10 C -0.283 4.283 11 C 0.335 3.665 12 O -0.427 6.427 13 N -0.372 5.372 14 C 0.095 3.905 15 C -0.032 4.032 16 N -0.204 5.204 17 C -0.066 4.066 18 C -0.017 4.017 19 C -0.114 4.114 20 C -0.097 4.097 21 C -0.143 4.143 22 C 0.064 3.936 23 F -0.122 7.122 24 C -0.143 4.143 25 N -0.078 5.078 26 O 0.035 5.965 27 H 0.080 0.920 28 H 0.129 0.871 29 H 0.132 0.868 30 H 0.253 0.747 31 H 0.145 0.855 32 H 0.139 0.861 33 H 0.164 0.836 34 H 0.196 0.804 35 H 0.186 0.814 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 17.106 -27.905 1.710 32.775 hybrid contribution 1.520 1.586 0.320 2.220 sum 18.626 -26.319 2.030 32.307 Atomic orbital electron populations 1.70174 1.07864 1.28521 1.48087 1.26088 0.95956 1.03225 0.93859 0.84938 0.78623 0.76572 0.78018 1.18131 1.19983 1.20069 1.23242 0.95384 0.92100 1.58636 0.89914 1.85534 1.10076 0.98999 1.97049 1.23375 1.03844 0.93912 1.07162 1.19890 0.85906 0.86070 0.74674 1.90735 1.16843 1.85734 1.49358 1.45596 1.10831 1.03773 1.76980 1.19748 0.87033 0.75914 1.07798 1.28606 0.97186 0.97261 0.80162 1.72067 1.07936 1.11357 1.29078 1.24112 0.96646 0.98209 0.87676 1.17175 0.95284 0.98220 0.90982 1.21483 0.93525 0.94705 1.01695 1.21365 0.98286 0.97747 0.92316 1.21731 0.97970 0.98443 0.96203 1.17697 0.98673 1.00341 0.76935 1.91519 1.95970 1.95411 1.29279 1.21126 0.99930 1.00251 0.92965 1.74907 1.06853 1.11219 1.14820 1.85332 1.33181 1.42479 1.35518 0.92008 0.87108 0.86778 0.74671 0.85522 0.86095 0.83649 0.80368 0.81378 0.84372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.90 13.22 21.65 0.29 -54.62 16 2 C 0.01 0.76 5.49 84.86 0.47 1.23 16 3 Si 1.00 42.99 29.55 68.60 2.03 45.02 16 4 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 5 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 6 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 7 C -0.55 -30.36 9.50 67.95 0.65 -29.71 16 8 H 0.08 4.28 7.80 -2.91 -0.02 4.26 16 9 S -0.14 -7.64 20.57 -56.49 -1.16 -8.80 16 10 C -0.13 -4.82 6.16 71.24 0.44 -4.38 16 11 C 0.55 17.79 7.85 87.66 0.69 18.48 16 12 O -0.55 -22.51 15.86 -3.04 -0.05 -22.55 16 13 N -0.71 -15.37 5.55 -466.80 -2.59 -17.96 16 14 C 0.22 3.90 6.30 85.63 0.54 4.44 16 15 C 0.19 3.46 7.86 88.36 0.69 4.16 16 16 N -0.47 -10.06 11.26 -302.51 -3.41 -13.46 16 17 C 0.20 4.22 7.80 137.30 1.07 5.29 16 18 C -0.01 -0.26 5.88 -20.04 -0.12 -0.38 16 19 C -0.09 -1.15 9.69 22.48 0.22 -0.94 16 20 C -0.08 -0.57 10.03 22.23 0.22 -0.35 16 21 C -0.12 -1.13 10.02 22.35 0.22 -0.91 16 22 C 0.08 1.25 7.29 22.35 0.16 1.42 16 23 F -0.14 -2.53 17.26 44.97 0.78 -1.76 16 24 C -0.12 -2.15 9.68 22.53 0.22 -1.93 16 25 N -0.37 -7.74 11.86 -59.14 -0.70 -8.44 16 26 O 0.10 1.86 11.29 74.61 0.84 2.70 16 27 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 28 H 0.11 3.67 8.14 -2.40 -0.02 3.65 16 29 H 0.11 3.71 8.14 -2.40 -0.02 3.69 16 30 H 0.42 7.02 8.46 -92.71 -0.78 6.24 16 31 H 0.13 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.15 1.55 7.87 -2.91 -0.02 1.53 16 34 H 0.18 0.01 8.06 -2.91 -0.02 -0.01 16 35 H 0.17 0.62 8.06 -2.91 -0.02 0.59 16 36 H 0.14 2.64 7.88 -2.91 -0.02 2.61 16 Total: -1.00 -75.66 350.30 1.87 -73.80 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: 0.37 Total: 9.65 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: 5.47 Total: -3.58 kcal Atomic # 7 Polarization: -88.07 SS G_CDS: -6.41 Total: -94.48 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: 0.79 Total: -19.85 kcal Atomic # 9 Polarization: -2.53 SS G_CDS: 0.78 Total: -1.76 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Atomic # 16 Polarization: -7.64 SS G_CDS: -1.16 Total: -8.80 kcal Total: -75.66 1.87 -73.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373236506.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.702 kcal (2) G-P(sol) polarization free energy of solvation -75.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds