Wall clock time and date at job start Tue Mar 31 2020 19:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42897 * 114.00237 * 2 1 4 4 C 1.52992 * 109.47166 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47287 * 65.00366 * 4 3 2 6 6 C 1.36940 * 119.99800 * 275.90020 * 5 4 3 7 7 H 1.07993 * 120.00419 * 147.29635 * 6 5 4 8 8 C 1.38818 * 119.99683 * 327.29425 * 6 5 4 9 9 N 1.31615 * 119.99995 * 335.69563 * 8 6 5 10 10 Si 1.86797 * 119.99799 * 155.69177 * 8 6 5 11 11 H 1.48504 * 109.47350 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.47009 * 119.99840 * 10 8 6 13 13 H 1.48502 * 109.47408 * 240.00148 * 10 8 6 14 14 S 1.65600 * 120.00346 * 95.89773 * 5 4 3 15 15 O 1.42100 * 106.40126 * 156.46282 * 14 5 4 16 16 O 1.42093 * 106.40418 * 23.53839 * 14 5 4 17 17 C 1.76202 * 107.21365 * 270.00057 * 14 5 4 18 18 C 1.38246 * 120.00390 * 115.28408 * 17 14 5 19 19 C 1.38221 * 120.04699 * 180.24888 * 18 17 14 20 20 C 1.38258 * 120.06091 * 359.73998 * 19 18 17 21 21 C 1.38274 * 120.01547 * 359.97438 * 20 19 18 22 22 Cl 1.73599 * 120.02817 * 179.97438 * 21 20 19 23 23 C 1.38406 * 120.00950 * 294.99298 * 17 14 5 24 24 F 1.35096 * 120.02604 * 0.03632 * 23 17 14 25 25 H 1.08996 * 109.47175 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47222 * 300.00533 * 1 2 3 27 27 H 1.09007 * 109.46951 * 60.00361 * 1 2 3 28 28 H 1.08998 * 109.47164 * 59.99326 * 3 2 1 29 29 H 1.09002 * 109.46906 * 299.99822 * 3 2 1 30 30 H 1.08998 * 109.47231 * 304.99559 * 4 3 2 31 31 H 1.09000 * 109.47200 * 184.99780 * 4 3 2 32 32 H 0.97003 * 120.00263 * 180.02562 * 9 8 6 33 33 H 1.07996 * 119.97670 * 359.96455 * 18 17 14 34 34 H 1.07993 * 119.96901 * 179.76068 * 19 18 17 35 35 H 1.08001 * 119.99568 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 3.9824 -0.7999 -1.3740 7 1 3.7822 -1.2565 -2.3320 8 6 4.2454 -1.5956 -0.2674 9 7 4.9368 -1.1109 0.7423 10 14 3.6180 -3.3541 -0.2111 11 1 2.8744 -3.6547 -1.4609 12 1 4.7672 -4.2859 -0.0833 13 1 2.7140 -3.5202 0.9553 14 16 4.4686 1.5116 -2.5167 15 8 5.3190 0.7021 -3.3172 16 8 4.8784 2.7507 -1.9548 17 6 3.0440 1.8557 -3.4949 18 6 2.5814 3.1534 -3.6098 19 6 1.4609 3.4237 -4.3727 20 6 0.8042 2.3976 -5.0264 21 6 1.2682 1.0995 -4.9180 22 17 0.4434 -0.1892 -5.7382 23 6 2.3915 0.8279 -4.1531 24 9 2.8460 -0.4398 -4.0456 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.6886 1.8464 0.8899 29 1 1.6887 1.8463 -0.8900 30 1 3.8508 0.5685 0.8427 31 1 3.9785 2.1764 0.0902 32 1 5.1209 -1.6670 1.5154 33 1 3.0931 3.9559 -3.0994 34 1 1.0983 4.4373 -4.4584 35 1 -0.0715 2.6099 -5.6219 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414450860.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:30 Heat of formation + Delta-G solvation = -118.575823 kcal Electronic energy + Delta-G solvation = -26661.983015 eV Core-core repulsion = 22535.976745 eV Total energy + Delta-G solvation = -4126.006270 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 337.038 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -48.83631 -39.00907 -37.37914 -36.56760 -36.09009 -35.23453 -34.70144 -31.47222 -31.20643 -30.45514 -28.80524 -25.82020 -24.22347 -23.58605 -22.81990 -21.56699 -18.81924 -18.09524 -17.28827 -16.94752 -16.57734 -16.29344 -15.63298 -15.39300 -15.19950 -14.99915 -14.56648 -14.43842 -14.34212 -14.09210 -13.30650 -13.28388 -13.01769 -12.64133 -12.09148 -11.98475 -11.77840 -11.75204 -11.58246 -11.23660 -11.19941 -11.05706 -10.99765 -10.87266 -10.75034 -10.38615 -10.26128 -10.04622 -9.96970 -9.39768 -9.02911 -8.94480 -8.71329 -7.68488 -6.20685 -3.80256 0.64010 0.95738 1.36964 1.95044 3.20065 3.31742 3.38452 3.45611 4.02043 4.13750 4.46104 4.54303 4.57375 4.67314 4.83349 4.97338 5.13713 5.23812 5.53282 5.64911 5.65930 5.70159 5.84082 5.92278 5.93330 6.01226 6.03901 6.05052 6.23083 6.39649 6.55281 7.14103 7.42047 7.73554 8.01062 8.50502 9.06576 9.44248 10.81653 Molecular weight = 337.04amu Principal moments of inertia in cm(-1) A = 0.011827 B = 0.006592 C = 0.005840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2366.898990 B = 4246.326778 C = 4793.063977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.350 6.350 3 C 0.051 3.949 4 C 0.116 3.884 5 N -0.831 5.831 6 C -0.249 4.249 7 H 0.100 0.900 8 C 0.047 3.953 9 N -0.854 5.854 10 Si 0.920 3.080 11 H -0.267 1.267 12 H -0.286 1.286 13 H -0.280 1.280 14 S 2.601 3.399 15 O -0.962 6.962 16 O -0.997 6.997 17 C -0.681 4.681 18 C 0.000 4.000 19 C -0.148 4.148 20 C -0.046 4.046 21 C -0.101 4.101 22 Cl -0.051 7.051 23 C 0.219 3.781 24 F -0.094 7.094 25 H 0.076 0.924 26 H 0.029 0.971 27 H 0.029 0.971 28 H 0.041 0.959 29 H 0.029 0.971 30 H 0.128 0.872 31 H 0.077 0.923 32 H 0.267 0.733 33 H 0.154 0.846 34 H 0.142 0.858 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.322 7.004 -5.703 14.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.268 6.268 3 C -0.028 4.028 4 C -0.012 4.012 5 N -0.662 5.662 6 C -0.388 4.388 7 H 0.118 0.882 8 C -0.161 4.161 9 N -0.495 5.495 10 Si 0.747 3.253 11 H -0.191 1.191 12 H -0.213 1.213 13 H -0.206 1.206 14 S 2.699 3.301 15 O -0.951 6.951 16 O -0.987 6.987 17 C -0.762 4.762 18 C -0.019 4.019 19 C -0.167 4.167 20 C -0.064 4.064 21 C -0.129 4.129 22 Cl -0.022 7.022 23 C 0.198 3.802 24 F -0.072 7.072 25 H 0.095 0.905 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.059 0.941 29 H 0.047 0.953 30 H 0.145 0.855 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.171 0.829 34 H 0.160 0.840 35 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -10.366 7.092 -5.966 13.905 hybrid contribution -1.363 -0.837 -0.252 1.619 sum -11.729 6.255 -6.217 14.675 Atomic orbital electron populations 1.22661 0.83973 1.01750 0.98536 1.88241 1.16715 1.26940 1.94857 1.23132 0.96912 0.84829 0.97911 1.21549 0.89270 0.98821 0.91560 1.52683 1.75837 1.13694 1.23975 1.19407 1.42435 0.78722 0.98234 0.88231 1.25239 0.94921 0.99105 0.96828 1.69932 1.34029 1.37258 1.08308 0.85987 0.78553 0.82109 0.78682 1.19124 1.21268 1.20571 1.06917 0.73693 0.73770 0.75766 1.93463 1.61982 1.68243 1.71443 1.93380 1.80016 1.48132 1.77129 1.31780 1.26492 0.99050 1.18906 1.21008 0.93514 0.94453 0.92968 1.21238 0.96683 0.99511 0.99238 1.21121 0.98778 0.89788 0.96748 1.21025 0.97181 0.91499 1.03203 1.98377 1.77416 1.49189 1.77214 1.16768 0.90745 0.79715 0.93008 1.91685 1.87306 1.35015 1.93182 0.90499 0.95277 0.95270 0.94124 0.95299 0.85504 0.90477 0.92331 0.82873 0.83976 0.83844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.55 16 2 O -0.35 -7.08 9.90 -35.23 -0.35 -7.43 16 3 C 0.05 0.96 6.28 37.15 0.23 1.19 16 4 C 0.12 2.53 5.75 -4.05 -0.02 2.51 16 5 N -0.83 -20.07 2.85 -59.91 -0.17 -20.24 16 6 C -0.25 -6.48 7.84 -15.06 -0.12 -6.59 16 7 H 0.10 2.62 5.74 -52.49 -0.30 2.32 16 8 C 0.05 1.22 4.98 -17.43 -0.09 1.13 16 9 N -0.85 -22.62 11.25 55.49 0.62 -21.99 16 10 Si 0.92 20.94 29.62 -169.99 -5.03 15.91 16 11 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 12 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 13 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 14 S 2.60 60.07 5.30 -107.50 -0.57 59.50 16 15 O -0.96 -25.40 16.64 -57.17 -0.95 -26.35 16 16 O -1.00 -23.15 15.51 -57.17 -0.89 -24.04 16 17 C -0.68 -12.87 5.91 -39.52 -0.23 -13.11 16 18 C 0.00 -0.01 9.55 -39.58 -0.38 -0.38 16 19 C -0.15 -1.71 10.04 -39.58 -0.40 -2.11 16 20 C -0.05 -0.54 9.83 -39.56 -0.39 -0.93 16 21 C -0.10 -1.55 6.33 -39.44 -0.25 -1.80 16 22 Cl -0.05 -0.72 28.62 -51.86 -1.48 -2.20 16 23 C 0.22 4.14 7.19 -39.39 -0.28 3.85 16 24 F -0.09 -2.02 13.44 2.25 0.03 -1.99 16 25 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.03 0.42 8.14 -51.92 -0.42 -0.01 16 28 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.13 3.07 5.28 -51.93 -0.27 2.79 16 31 H 0.08 1.58 6.90 -51.93 -0.36 1.22 16 32 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 33 H 0.15 2.08 7.33 -52.49 -0.38 1.69 16 34 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.14 1.22 8.06 -52.49 -0.42 0.79 16 LS Contribution 329.56 15.07 4.97 4.97 Total: -1.00 -31.34 329.56 -8.05 -39.39 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: -3.41 Total: -0.83 kcal Atomic # 6 Polarization: -13.88 SS G_CDS: -0.81 Total: -14.69 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: 0.45 Total: -42.23 kcal Atomic # 8 Polarization: -55.63 SS G_CDS: -2.19 Total: -57.82 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.03 Total: -1.99 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.03 Total: 15.91 kcal Atomic # 16 Polarization: 60.07 SS G_CDS: -0.57 Total: 59.50 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.48 Total: -2.20 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.34 -8.05 -39.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414450860.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.183 kcal (2) G-P(sol) polarization free energy of solvation -31.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds