Wall clock time and date at job start Tue Mar 31 2020 19:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42897 * 114.00237 * 2 1 4 4 C 1.52992 * 109.47166 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47287 * 65.00366 * 4 3 2 6 6 C 1.36940 * 119.99800 * 275.90020 * 5 4 3 7 7 H 1.07993 * 120.00419 * 147.29635 * 6 5 4 8 8 C 1.38818 * 119.99683 * 327.29425 * 6 5 4 9 9 N 1.31615 * 119.99995 * 335.69563 * 8 6 5 10 10 Si 1.86797 * 119.99799 * 155.69177 * 8 6 5 11 11 H 1.48504 * 109.47350 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.47009 * 119.99840 * 10 8 6 13 13 H 1.48502 * 109.47408 * 240.00148 * 10 8 6 14 14 S 1.65600 * 120.00346 * 95.89773 * 5 4 3 15 15 O 1.42100 * 106.40126 * 156.46282 * 14 5 4 16 16 O 1.42093 * 106.40418 * 23.53839 * 14 5 4 17 17 C 1.76202 * 107.21365 * 270.00057 * 14 5 4 18 18 C 1.38246 * 120.00390 * 115.28408 * 17 14 5 19 19 C 1.38221 * 120.04699 * 180.24888 * 18 17 14 20 20 C 1.38258 * 120.06091 * 359.73998 * 19 18 17 21 21 C 1.38274 * 120.01547 * 359.97438 * 20 19 18 22 22 Cl 1.73599 * 120.02817 * 179.97438 * 21 20 19 23 23 C 1.38406 * 120.00950 * 294.99298 * 17 14 5 24 24 F 1.35096 * 120.02604 * 0.03632 * 23 17 14 25 25 H 1.08996 * 109.47175 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47222 * 300.00533 * 1 2 3 27 27 H 1.09007 * 109.46951 * 60.00361 * 1 2 3 28 28 H 1.08998 * 109.47164 * 59.99326 * 3 2 1 29 29 H 1.09002 * 109.46906 * 299.99822 * 3 2 1 30 30 H 1.08998 * 109.47231 * 304.99559 * 4 3 2 31 31 H 1.09000 * 109.47200 * 184.99780 * 4 3 2 32 32 H 0.97003 * 120.00263 * 180.02562 * 9 8 6 33 33 H 1.07996 * 119.97670 * 359.96455 * 18 17 14 34 34 H 1.07993 * 119.96901 * 179.76068 * 19 18 17 35 35 H 1.08001 * 119.99568 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 3.9824 -0.7999 -1.3740 7 1 3.7822 -1.2565 -2.3320 8 6 4.2454 -1.5956 -0.2674 9 7 4.9368 -1.1109 0.7423 10 14 3.6180 -3.3541 -0.2111 11 1 2.8744 -3.6547 -1.4609 12 1 4.7672 -4.2859 -0.0833 13 1 2.7140 -3.5202 0.9553 14 16 4.4686 1.5116 -2.5167 15 8 5.3190 0.7021 -3.3172 16 8 4.8784 2.7507 -1.9548 17 6 3.0440 1.8557 -3.4949 18 6 2.5814 3.1534 -3.6098 19 6 1.4609 3.4237 -4.3727 20 6 0.8042 2.3976 -5.0264 21 6 1.2682 1.0995 -4.9180 22 17 0.4434 -0.1892 -5.7382 23 6 2.3915 0.8279 -4.1531 24 9 2.8460 -0.4398 -4.0456 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.6886 1.8464 0.8899 29 1 1.6887 1.8463 -0.8900 30 1 3.8508 0.5685 0.8427 31 1 3.9785 2.1764 0.0902 32 1 5.1209 -1.6670 1.5154 33 1 3.0931 3.9559 -3.0994 34 1 1.0983 4.4373 -4.4584 35 1 -0.0715 2.6099 -5.6219 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414450860.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:24:29 Heat of formation + Delta-G solvation = -140.675478 kcal Electronic energy + Delta-G solvation = -26662.941328 eV Core-core repulsion = 22535.976745 eV Total energy + Delta-G solvation = -4126.964583 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 337.038 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -50.29566 -40.16690 -38.89947 -38.03134 -37.68180 -36.96394 -36.66158 -33.32850 -32.41712 -31.61722 -30.42683 -27.21382 -26.01413 -24.83620 -24.00889 -23.19379 -20.51193 -19.67412 -18.92187 -18.50504 -18.10626 -17.74974 -17.07701 -16.86636 -16.74644 -16.36690 -16.15537 -16.10670 -15.69281 -15.58590 -15.03734 -14.65148 -14.23552 -13.80892 -13.66551 -13.53650 -13.46831 -13.08432 -13.04981 -12.93558 -12.83157 -12.76474 -12.64846 -12.37567 -12.34682 -12.16201 -11.88280 -11.73583 -11.63418 -10.94176 -10.53914 -10.32608 -9.89838 -9.55237 -8.10917 -5.77915 -0.60178 -0.34569 -0.21300 0.81255 1.47457 1.50205 1.61925 2.04597 2.36174 2.63329 2.78815 2.87749 3.16340 3.24816 3.45444 3.67350 3.79826 4.02997 4.20770 4.34823 4.39742 4.58398 4.60329 4.60963 4.64498 4.69627 4.73889 4.86423 4.89554 4.97909 5.37229 5.48256 5.58510 5.94560 6.57588 6.63038 7.16055 7.52600 8.92307 Molecular weight = 337.04amu Principal moments of inertia in cm(-1) A = 0.011827 B = 0.006592 C = 0.005840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2366.898990 B = 4246.326778 C = 4793.063977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.388 6.388 3 C 0.057 3.943 4 C 0.105 3.895 5 N -0.842 5.842 6 C -0.278 4.278 7 H 0.086 0.914 8 C 0.014 3.986 9 N -0.889 5.889 10 Si 0.961 3.039 11 H -0.269 1.269 12 H -0.287 1.287 13 H -0.274 1.274 14 S 2.631 3.369 15 O -1.005 7.005 16 O -1.002 7.002 17 C -0.701 4.701 18 C -0.005 4.005 19 C -0.119 4.119 20 C -0.023 4.023 21 C -0.106 4.106 22 Cl -0.044 7.044 23 C 0.182 3.818 24 F -0.123 7.123 25 H 0.080 0.920 26 H 0.052 0.948 27 H 0.040 0.960 28 H 0.070 0.930 29 H 0.041 0.959 30 H 0.105 0.895 31 H 0.084 0.916 32 H 0.266 0.734 33 H 0.167 0.833 34 H 0.199 0.801 35 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.505 9.756 -7.155 18.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.307 6.307 3 C -0.021 4.021 4 C -0.022 4.022 5 N -0.673 5.673 6 C -0.413 4.413 7 H 0.103 0.897 8 C -0.190 4.190 9 N -0.531 5.531 10 Si 0.787 3.213 11 H -0.194 1.194 12 H -0.213 1.213 13 H -0.200 1.200 14 S 2.731 3.269 15 O -0.995 6.995 16 O -0.992 6.992 17 C -0.789 4.789 18 C -0.024 4.024 19 C -0.137 4.137 20 C -0.041 4.041 21 C -0.135 4.135 22 Cl -0.015 7.015 23 C 0.160 3.840 24 F -0.101 7.101 25 H 0.099 0.901 26 H 0.070 0.930 27 H 0.059 0.941 28 H 0.088 0.912 29 H 0.060 0.940 30 H 0.122 0.878 31 H 0.102 0.898 32 H 0.075 0.925 33 H 0.185 0.815 34 H 0.216 0.784 35 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -13.517 9.763 -7.328 18.213 hybrid contribution -0.564 -1.413 -0.020 1.522 sum -14.081 8.349 -7.348 17.944 Atomic orbital electron populations 1.22839 0.81611 1.02671 1.00154 1.88183 1.19420 1.27848 1.95205 1.23018 0.94462 0.84855 0.99811 1.21618 0.91992 0.98257 0.90321 1.52554 1.76929 1.13474 1.24373 1.19234 1.44448 0.79805 0.97828 0.89682 1.25694 0.95128 1.01581 0.96614 1.70010 1.35743 1.38322 1.09008 0.85366 0.78069 0.79366 0.78469 1.19358 1.21317 1.19984 1.04421 0.74540 0.72886 0.75071 1.93428 1.64772 1.69492 1.71801 1.93382 1.81115 1.46923 1.77737 1.31043 1.25911 1.01361 1.20605 1.21374 0.94751 0.92727 0.93549 1.21835 0.94073 1.01900 0.95927 1.21779 0.99177 0.87879 0.95292 1.21248 0.96252 0.93227 1.02724 1.98382 1.76864 1.49454 1.76846 1.17161 0.92769 0.78735 0.95291 1.91611 1.87974 1.36794 1.93711 0.90095 0.92981 0.94115 0.91217 0.94033 0.87790 0.89809 0.92456 0.81514 0.78416 0.79157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.70 11.01 113.37 1.25 1.94 16 2 O -0.39 -15.58 9.90 -148.98 -1.47 -17.06 16 3 C 0.06 2.08 6.28 71.98 0.45 2.53 16 4 C 0.11 4.69 5.75 86.38 0.50 5.19 16 5 N -0.84 -41.93 2.85 -343.46 -0.98 -42.91 16 6 C -0.28 -15.17 7.84 84.03 0.66 -14.51 16 7 H 0.09 4.79 5.74 -2.91 -0.02 4.77 16 8 C 0.01 0.75 4.98 84.86 0.42 1.17 16 9 N -0.89 -49.41 11.25 21.65 0.24 -49.17 16 10 Si 0.96 44.65 29.62 68.60 2.03 46.68 16 11 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 12 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 13 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 14 S 2.63 123.65 5.30 -56.49 -0.30 123.35 16 15 O -1.00 -55.32 16.64 -128.00 -2.13 -57.45 16 16 O -1.00 -46.36 15.51 -128.00 -1.99 -48.34 16 17 C -0.70 -25.70 5.91 22.31 0.13 -25.57 16 18 C 0.00 -0.13 9.55 22.27 0.21 0.08 16 19 C -0.12 -1.98 10.04 22.27 0.22 -1.76 16 20 C -0.02 -0.42 9.83 22.28 0.22 -0.20 16 21 C -0.11 -2.96 6.33 22.36 0.14 -2.82 16 22 Cl -0.04 -1.16 28.62 -2.72 -0.08 -1.24 16 23 C 0.18 6.74 7.19 22.39 0.16 6.90 16 24 F -0.12 -5.47 13.44 44.97 0.60 -4.86 16 25 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 26 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.04 1.07 8.14 -2.38 -0.02 1.05 16 28 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.10 5.24 5.28 -2.39 -0.01 5.23 16 31 H 0.08 3.49 6.90 -2.39 -0.02 3.47 16 32 H 0.27 13.96 8.31 -92.71 -0.77 13.19 16 33 H 0.17 3.86 7.33 -2.91 -0.02 3.84 16 34 H 0.20 1.25 8.06 -2.91 -0.02 1.23 16 35 H 0.19 1.74 8.06 -2.91 -0.02 1.72 16 Total: -1.00 -73.77 329.56 1.44 -72.33 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: 1.14 Total: 5.69 kcal Atomic # 6 Polarization: -31.39 SS G_CDS: 4.37 Total: -27.02 kcal Atomic # 7 Polarization: -91.35 SS G_CDS: -0.74 Total: -92.08 kcal Atomic # 8 Polarization: -117.26 SS G_CDS: -5.59 Total: -122.85 kcal Atomic # 9 Polarization: -5.47 SS G_CDS: 0.60 Total: -4.86 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Atomic # 16 Polarization: 123.65 SS G_CDS: -0.30 Total: 123.35 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -0.08 Total: -1.24 kcal Total: -73.77 1.44 -72.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414450860.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.343 kcal (2) G-P(sol) polarization free energy of solvation -73.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds