Wall clock time and date at job start Tue Mar 31 2020 20:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47337 * 300.11778 * 3 2 1 5 5 C 1.36935 * 119.99890 * 85.78612 * 4 3 2 6 6 H 1.08000 * 120.00090 * 218.44240 * 5 4 3 7 7 C 1.38814 * 119.99967 * 38.71989 * 5 4 3 8 8 N 1.31614 * 119.99935 * 212.22566 * 7 5 4 9 9 Si 1.86802 * 119.99828 * 32.22451 * 7 5 4 10 10 H 1.48508 * 109.47000 * 95.79857 * 9 7 5 11 11 H 1.48498 * 109.46996 * 215.79857 * 9 7 5 12 12 H 1.48498 * 109.47196 * 335.79875 * 9 7 5 13 13 S 1.65596 * 120.00032 * 265.79082 * 4 3 2 14 14 O 1.42099 * 106.40317 * 23.53971 * 13 4 3 15 15 O 1.42099 * 106.40366 * 156.46034 * 13 4 3 16 16 C 1.76204 * 107.21850 * 269.99763 * 13 4 3 17 17 O 1.34432 * 124.92213 * 269.69968 * 16 13 4 18 18 C 1.34889 * 110.88506 * 179.81066 * 17 16 13 19 19 C 1.38914 * 133.37398 * 180.08262 * 18 17 16 20 20 C 1.37811 * 119.98882 * 180.38151 * 19 18 17 21 21 C 1.38945 * 120.66937 * 0.02993 * 20 19 18 22 22 F 1.35100 * 119.89064 * 179.97438 * 21 20 19 23 23 C 1.37922 * 120.22343 * 359.91992 * 21 20 19 24 24 C 1.39438 * 119.57535 * 0.10524 * 23 21 20 25 25 C 1.33997 * 124.92210 * 89.99939 * 16 13 4 26 26 C 1.50704 * 126.90621 * 359.97438 * 25 16 13 27 27 H 4.40641 * 5.51378 * 179.97438 * 4 1 2 28 28 H 1.09003 * 109.47041 * 180.12094 * 3 2 1 29 29 H 1.09001 * 109.47403 * 60.11940 * 3 2 1 30 30 H 0.97003 * 119.99643 * 180.02562 * 8 7 5 31 31 H 1.07994 * 120.00713 * 0.41454 * 19 18 17 32 32 H 1.07999 * 119.66468 * 180.02562 * 20 19 18 33 33 H 1.07995 * 120.20872 * 180.02562 * 23 21 20 34 34 H 1.09005 * 109.47126 * 90.00167 * 26 25 16 35 35 H 1.09000 * 109.47211 * 210.00117 * 26 25 16 36 36 H 1.08999 * 109.47378 * 330.00266 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.6922 1.1947 5 6 3.2814 -2.0536 1.1848 6 1 3.0294 -2.6304 2.0624 7 6 3.7595 -2.6919 0.0485 8 7 3.3449 -3.9052 -0.2483 9 14 4.9913 -1.8286 -1.0591 10 1 6.3671 -2.2523 -0.6942 11 1 4.7215 -2.1884 -2.4744 12 1 4.8646 -0.3588 -0.8893 13 16 3.5096 0.1710 2.5573 14 8 2.7705 1.3823 2.4809 15 8 3.4066 -0.7348 3.6472 16 6 5.2101 0.6175 2.4405 17 8 6.2329 -0.1185 2.9089 18 6 7.4130 0.4875 2.6643 19 6 8.7329 0.1506 2.9365 20 6 9.7519 0.9984 2.5597 21 6 9.4749 2.1936 1.9076 22 9 10.4861 3.0133 1.5458 23 6 8.1711 2.5456 1.6274 24 6 7.1324 1.6953 2.0047 25 6 5.6709 1.7425 1.8769 26 6 4.8530 2.8360 1.2394 27 1 -1.0498 0.0001 0.0003 28 1 3.0089 1.0285 0.0022 29 1 3.0096 -0.5112 -0.8910 30 1 3.6793 -4.3513 -1.0421 31 1 8.9605 -0.7758 3.4428 32 1 10.7762 0.7311 2.7736 33 1 7.9561 3.4745 1.1202 34 1 4.5916 3.5800 1.9920 35 1 5.4333 3.3090 0.4472 36 1 3.9425 2.4101 0.8180 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490865494.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:26 Heat of formation + Delta-G solvation = -14.534718 kcal Electronic energy + Delta-G solvation = -27170.907889 eV Core-core repulsion = 23051.846029 eV Total energy + Delta-G solvation = -4119.061859 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.062 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -48.93601 -42.13544 -37.51877 -36.69489 -36.09956 -34.59236 -33.80375 -33.05856 -31.74464 -30.47873 -29.52071 -27.18187 -26.89608 -24.30373 -23.63248 -22.48478 -20.30263 -18.97464 -18.56302 -18.06757 -17.52538 -16.91590 -16.68218 -16.55852 -16.01450 -15.75521 -15.42814 -15.37694 -14.53274 -14.28968 -14.12355 -13.70378 -13.48452 -13.37554 -13.20075 -13.02328 -12.80643 -12.75151 -12.37063 -12.12116 -11.83459 -11.47794 -11.40080 -11.10408 -10.95049 -10.81885 -10.72522 -10.51554 -10.31149 -9.94203 -9.89124 -9.66186 -9.38328 -8.64909 -8.47101 -8.16273 -7.20087 -4.45856 0.64232 1.15253 1.22028 2.21156 2.77004 2.90121 2.96746 3.05881 3.30279 3.43673 3.49352 3.65658 4.03600 4.14081 4.29038 4.52672 4.63554 4.73698 4.87037 4.98407 5.03575 5.19817 5.34611 5.51479 5.57974 5.68641 5.81230 5.84020 5.89143 5.94255 5.96861 6.18083 6.24648 6.39530 6.51180 6.56216 6.69689 6.93858 7.26840 7.84148 8.18727 8.35086 8.49789 9.82897 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.014185 B = 0.004959 C = 0.004478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.511232 B = 5644.673157 C = 6251.425179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.169 4.169 3 C 0.232 3.768 4 N -0.797 5.797 5 C -0.210 4.210 6 H 0.134 0.866 7 C 0.073 3.927 8 N -0.773 5.773 9 Si 0.857 3.143 10 H -0.263 1.263 11 H -0.265 1.265 12 H -0.246 1.246 13 S 2.469 3.531 14 O -0.983 6.983 15 O -0.957 6.957 16 C -0.468 4.468 17 O -0.132 6.132 18 C 0.047 3.953 19 C -0.080 4.080 20 C -0.126 4.126 21 C 0.070 3.930 22 F -0.141 7.141 23 C -0.100 4.100 24 C -0.116 4.116 25 C -0.105 4.105 26 C -0.095 4.095 27 H 0.214 0.786 28 H 0.094 0.906 29 H 0.087 0.913 30 H 0.292 0.708 31 H 0.145 0.855 32 H 0.146 0.854 33 H 0.139 0.861 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.747 7.255 -2.617 10.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.171 4.171 3 C 0.107 3.893 4 N -0.617 5.617 5 C -0.369 4.369 6 H 0.151 0.849 7 C -0.150 4.150 8 N -0.406 5.406 9 Si 0.679 3.321 10 H -0.188 1.188 11 H -0.190 1.190 12 H -0.170 1.170 13 S 2.570 3.430 14 O -0.972 6.972 15 O -0.947 6.947 16 C -0.585 4.585 17 O -0.030 6.030 18 C -0.004 4.004 19 C -0.098 4.098 20 C -0.145 4.145 21 C 0.050 3.950 22 F -0.119 7.119 23 C -0.119 4.119 24 C -0.117 4.117 25 C -0.108 4.108 26 C -0.151 4.151 27 H 0.231 0.769 28 H 0.112 0.888 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.163 0.837 32 H 0.164 0.836 33 H 0.156 0.844 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.404 7.511 -1.661 10.009 hybrid contribution 1.627 0.633 -0.885 1.957 sum 8.031 8.144 -2.546 11.717 Atomic orbital electron populations 1.24691 0.95637 1.01912 1.00244 1.23271 0.94444 0.99190 1.00224 1.18292 0.84438 0.96968 0.89629 1.54609 1.63266 1.13421 1.30437 1.19721 1.35431 0.78554 1.03151 0.84871 1.26012 0.95635 0.95363 0.98006 1.69905 1.33746 1.12656 1.24285 0.87196 0.82740 0.82028 0.80153 1.18768 1.18996 1.17000 1.16082 0.74084 0.73433 0.79427 1.93366 1.68520 1.47973 1.87298 1.93362 1.85172 1.62647 1.53500 1.38506 1.15605 0.98646 1.05727 1.84317 1.11030 1.43143 1.64512 1.20163 0.88443 0.92665 0.99090 1.19774 0.86798 1.01091 1.02149 1.20833 1.00049 0.93198 1.00380 1.17284 0.84238 0.90706 1.02730 1.91482 1.58769 1.71519 1.90157 1.20361 0.89665 1.00390 1.01477 1.19727 0.93407 0.95793 1.02792 1.21087 0.91053 0.96892 1.01809 1.20488 0.98683 0.95736 1.00213 0.76885 0.88847 0.89541 0.89746 0.83736 0.83624 0.84355 0.89976 0.91323 0.89640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.50 19.25 29.55 0.57 -2.93 16 2 C -0.17 -3.27 13.65 -37.12 -0.51 -3.78 16 3 C 0.23 4.52 4.31 -6.83 -0.03 4.49 16 4 N -0.80 -17.78 2.38 -62.77 -0.15 -17.93 16 5 C -0.21 -5.02 9.38 -15.06 -0.14 -5.16 16 6 H 0.13 3.44 7.64 -52.49 -0.40 3.04 16 7 C 0.07 1.65 5.11 -17.43 -0.09 1.56 16 8 N -0.77 -17.98 13.97 55.49 0.78 -17.20 16 9 Si 0.86 17.01 26.26 -169.99 -4.46 12.55 16 10 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 11 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 12 H -0.25 -4.59 5.85 56.52 0.33 -4.26 16 13 S 2.47 57.21 5.59 -107.50 -0.60 56.61 16 14 O -0.98 -22.59 14.67 -57.17 -0.84 -23.42 16 15 O -0.96 -25.23 16.97 -57.42 -0.97 -26.20 16 16 C -0.47 -10.12 7.27 29.24 0.21 -9.91 16 17 O -0.13 -2.86 10.58 3.73 0.04 -2.82 16 18 C 0.05 0.87 7.41 -38.50 -0.29 0.58 16 19 C -0.08 -1.16 10.06 -39.49 -0.40 -1.55 16 20 C -0.13 -1.59 9.99 -39.48 -0.39 -1.99 16 21 C 0.07 0.96 7.29 -39.44 -0.29 0.68 16 22 F -0.14 -1.86 17.26 2.25 0.04 -1.83 16 23 C -0.10 -1.49 10.08 -39.25 -0.40 -1.88 16 24 C -0.12 -2.07 6.38 -105.16 -0.67 -2.74 16 25 C -0.11 -2.02 6.34 -102.66 -0.65 -2.67 16 26 C -0.09 -1.51 9.39 36.01 0.34 -1.17 16 27 H 0.21 2.66 7.80 -54.10 -0.42 2.24 16 28 H 0.09 1.60 5.62 -51.93 -0.29 1.31 16 29 H 0.09 1.59 4.24 -51.93 -0.22 1.37 16 30 H 0.29 6.10 8.31 -40.82 -0.34 5.76 16 31 H 0.14 1.72 8.06 -52.49 -0.42 1.29 16 32 H 0.15 1.36 8.06 -52.49 -0.42 0.93 16 33 H 0.14 1.72 8.06 -52.49 -0.42 1.30 16 34 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.09 1.39 4.68 -51.93 -0.24 1.15 16 LS Contribution 332.39 15.07 5.01 5.01 Total: -1.00 -29.10 332.39 -6.79 -35.88 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -2.90 Total: 5.83 kcal Atomic # 6 Polarization: -23.75 SS G_CDS: -2.73 Total: -26.48 kcal Atomic # 7 Polarization: -35.76 SS G_CDS: 0.63 Total: -35.13 kcal Atomic # 8 Polarization: -50.68 SS G_CDS: -1.77 Total: -52.45 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.83 kcal Atomic # 14 Polarization: 17.01 SS G_CDS: -4.46 Total: 12.55 kcal Atomic # 16 Polarization: 57.21 SS G_CDS: -0.60 Total: 56.61 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.10 -6.79 -35.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490865494.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.350 kcal (2) G-P(sol) polarization free energy of solvation -29.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds