Wall clock time and date at job start Tue Mar 31 2020 20:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47337 * 300.11778 * 3 2 1 5 5 C 1.36935 * 119.99890 * 85.78612 * 4 3 2 6 6 H 1.08000 * 120.00090 * 218.44240 * 5 4 3 7 7 C 1.38814 * 119.99967 * 38.71989 * 5 4 3 8 8 N 1.31614 * 119.99935 * 212.22566 * 7 5 4 9 9 Si 1.86802 * 119.99828 * 32.22451 * 7 5 4 10 10 H 1.48508 * 109.47000 * 95.79857 * 9 7 5 11 11 H 1.48498 * 109.46996 * 215.79857 * 9 7 5 12 12 H 1.48498 * 109.47196 * 335.79875 * 9 7 5 13 13 S 1.65596 * 120.00032 * 265.79082 * 4 3 2 14 14 O 1.42099 * 106.40317 * 23.53971 * 13 4 3 15 15 O 1.42099 * 106.40366 * 156.46034 * 13 4 3 16 16 C 1.76204 * 107.21850 * 269.99763 * 13 4 3 17 17 O 1.34432 * 124.92213 * 269.69968 * 16 13 4 18 18 C 1.34889 * 110.88506 * 179.81066 * 17 16 13 19 19 C 1.38914 * 133.37398 * 180.08262 * 18 17 16 20 20 C 1.37811 * 119.98882 * 180.38151 * 19 18 17 21 21 C 1.38945 * 120.66937 * 0.02993 * 20 19 18 22 22 F 1.35100 * 119.89064 * 179.97438 * 21 20 19 23 23 C 1.37922 * 120.22343 * 359.91992 * 21 20 19 24 24 C 1.39438 * 119.57535 * 0.10524 * 23 21 20 25 25 C 1.33997 * 124.92210 * 89.99939 * 16 13 4 26 26 C 1.50704 * 126.90621 * 359.97438 * 25 16 13 27 27 H 4.40641 * 5.51378 * 179.97438 * 4 1 2 28 28 H 1.09003 * 109.47041 * 180.12094 * 3 2 1 29 29 H 1.09001 * 109.47403 * 60.11940 * 3 2 1 30 30 H 0.97003 * 119.99643 * 180.02562 * 8 7 5 31 31 H 1.07994 * 120.00713 * 0.41454 * 19 18 17 32 32 H 1.07999 * 119.66468 * 180.02562 * 20 19 18 33 33 H 1.07995 * 120.20872 * 180.02562 * 23 21 20 34 34 H 1.09005 * 109.47126 * 90.00167 * 26 25 16 35 35 H 1.09000 * 109.47211 * 210.00117 * 26 25 16 36 36 H 1.08999 * 109.47378 * 330.00266 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.6922 1.1947 5 6 3.2814 -2.0536 1.1848 6 1 3.0294 -2.6304 2.0624 7 6 3.7595 -2.6919 0.0485 8 7 3.3449 -3.9052 -0.2483 9 14 4.9913 -1.8286 -1.0591 10 1 6.3671 -2.2523 -0.6942 11 1 4.7215 -2.1884 -2.4744 12 1 4.8646 -0.3588 -0.8893 13 16 3.5096 0.1710 2.5573 14 8 2.7705 1.3823 2.4809 15 8 3.4066 -0.7348 3.6472 16 6 5.2101 0.6175 2.4405 17 8 6.2329 -0.1185 2.9089 18 6 7.4130 0.4875 2.6643 19 6 8.7329 0.1506 2.9365 20 6 9.7519 0.9984 2.5597 21 6 9.4749 2.1936 1.9076 22 9 10.4861 3.0133 1.5458 23 6 8.1711 2.5456 1.6274 24 6 7.1324 1.6953 2.0047 25 6 5.6709 1.7425 1.8769 26 6 4.8530 2.8360 1.2394 27 1 -1.0498 0.0001 0.0003 28 1 3.0089 1.0285 0.0022 29 1 3.0096 -0.5112 -0.8910 30 1 3.6793 -4.3513 -1.0421 31 1 8.9605 -0.7758 3.4428 32 1 10.7762 0.7311 2.7736 33 1 7.9561 3.4745 1.1202 34 1 4.5916 3.5800 1.9920 35 1 5.4333 3.3090 0.4472 36 1 3.9425 2.4101 0.8180 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490865494.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:24 Heat of formation + Delta-G solvation = -32.925967 kcal Electronic energy + Delta-G solvation = -27171.705393 eV Core-core repulsion = 23051.846029 eV Total energy + Delta-G solvation = -4119.859364 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.062 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -50.00237 -43.53271 -38.74337 -38.32693 -37.97938 -36.54720 -35.20332 -34.68478 -33.26995 -31.65939 -30.77080 -28.66032 -28.33758 -26.01937 -24.90134 -23.74635 -21.65133 -20.61610 -20.14495 -19.60347 -18.87021 -18.39143 -18.28190 -17.91159 -17.53285 -17.24101 -16.70702 -16.56775 -16.27858 -15.58668 -15.38051 -15.19798 -15.07285 -14.84395 -14.54654 -14.45996 -14.18774 -13.98016 -13.72475 -13.52308 -13.17066 -13.07987 -13.02229 -12.74578 -12.67170 -12.62119 -12.38827 -12.01370 -11.84216 -11.39896 -11.23070 -11.21069 -10.86923 -10.34633 -9.78208 -9.45806 -8.90225 -6.26789 -0.68853 -0.45819 -0.04830 0.79516 1.18032 1.32677 1.37187 1.63212 1.84546 2.03134 2.03847 2.30273 2.45807 2.56689 2.89899 3.00309 3.35184 3.40076 3.60621 3.64131 3.73054 3.90750 4.06223 4.10257 4.27058 4.41907 4.44365 4.60898 4.62195 4.78355 4.85778 4.88445 4.98567 4.99078 5.19365 5.27926 5.28469 5.44473 5.88837 6.00989 6.59769 6.75231 6.81762 8.18965 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.014185 B = 0.004959 C = 0.004478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.511232 B = 5644.673157 C = 6251.425179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.227 4.227 3 C 0.222 3.778 4 N -0.804 5.804 5 C -0.246 4.246 6 H 0.092 0.908 7 C 0.051 3.949 8 N -0.812 5.812 9 Si 0.896 3.104 10 H -0.273 1.273 11 H -0.244 1.244 12 H -0.229 1.229 13 S 2.508 3.492 14 O -0.984 6.984 15 O -1.001 7.001 16 C -0.523 4.523 17 O -0.163 6.163 18 C 0.020 3.980 19 C -0.089 4.089 20 C -0.100 4.100 21 C 0.073 3.927 22 F -0.132 7.132 23 C -0.095 4.095 24 C -0.139 4.139 25 C -0.081 4.081 26 C -0.104 4.104 27 H 0.255 0.745 28 H 0.114 0.886 29 H 0.095 0.905 30 H 0.300 0.700 31 H 0.167 0.833 32 H 0.188 0.812 33 H 0.165 0.835 34 H 0.094 0.906 35 H 0.106 0.894 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.023 10.025 -4.037 14.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.229 4.229 3 C 0.098 3.902 4 N -0.626 5.626 5 C -0.401 4.401 6 H 0.109 0.891 7 C -0.169 4.169 8 N -0.446 5.446 9 Si 0.716 3.284 10 H -0.199 1.199 11 H -0.167 1.167 12 H -0.151 1.151 13 S 2.611 3.389 14 O -0.973 6.973 15 O -0.992 6.992 16 C -0.643 4.643 17 O -0.063 6.063 18 C -0.030 4.030 19 C -0.107 4.107 20 C -0.118 4.118 21 C 0.054 3.946 22 F -0.111 7.111 23 C -0.114 4.114 24 C -0.141 4.141 25 C -0.084 4.084 26 C -0.160 4.160 27 H 0.271 0.729 28 H 0.131 0.869 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.185 0.815 32 H 0.205 0.795 33 H 0.183 0.817 34 H 0.112 0.888 35 H 0.125 0.875 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.624 10.234 -3.119 13.741 hybrid contribution 1.115 0.010 -0.303 1.155 sum 9.738 10.243 -3.422 14.542 Atomic orbital electron populations 1.25722 0.96643 0.99566 0.97691 1.23631 0.95273 1.01443 1.02580 1.18563 0.85149 0.97738 0.88719 1.54220 1.64493 1.12849 1.30991 1.19211 1.38836 0.79309 1.02728 0.89064 1.26363 0.96050 0.95767 0.98675 1.69924 1.35015 1.14102 1.25557 0.86585 0.79891 0.82323 0.79648 1.19900 1.16747 1.15140 1.13713 0.74059 0.72815 0.78313 1.93359 1.69014 1.47596 1.87313 1.93309 1.86323 1.64244 1.55284 1.37645 1.15364 1.01015 1.10291 1.84209 1.12184 1.44168 1.65776 1.20835 0.88753 0.93348 1.00034 1.20199 0.85473 1.02562 1.02473 1.21303 1.01410 0.91670 0.97428 1.17389 0.84089 0.90979 1.02149 1.91517 1.58266 1.71329 1.89991 1.20613 0.89312 1.00695 1.00771 1.19853 0.93272 0.96574 1.04384 1.21587 0.92334 0.95899 0.98608 1.20734 0.98661 0.95135 1.01506 0.72882 0.86876 0.88774 0.88889 0.81541 0.79497 0.81731 0.88789 0.87546 0.90240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.82 19.25 74.32 1.43 -4.39 16 2 C -0.23 -8.78 13.65 31.13 0.42 -8.35 16 3 C 0.22 8.72 4.31 84.57 0.36 9.08 16 4 N -0.80 -37.25 2.38 -352.51 -0.84 -38.09 16 5 C -0.25 -12.53 9.38 84.03 0.79 -11.74 16 6 H 0.09 5.25 7.64 -2.91 -0.02 5.23 16 7 C 0.05 2.43 5.11 84.86 0.43 2.87 16 8 N -0.81 -39.64 13.97 21.65 0.30 -39.34 16 9 Si 0.90 35.01 26.26 68.60 1.80 36.81 16 10 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 11 H -0.24 -8.61 7.11 99.48 0.71 -7.90 16 12 H -0.23 -8.16 5.85 99.48 0.58 -7.58 16 13 S 2.51 120.52 5.59 -56.49 -0.32 120.20 16 14 O -0.98 -45.61 14.67 -128.00 -1.88 -47.49 16 15 O -1.00 -56.18 16.97 -127.76 -2.17 -58.34 16 16 C -0.52 -23.02 7.27 66.85 0.49 -22.53 16 17 O -0.16 -7.31 10.58 -9.59 -0.10 -7.41 16 18 C 0.02 0.72 7.41 22.97 0.17 0.89 16 19 C -0.09 -2.36 10.06 22.33 0.22 -2.14 16 20 C -0.10 -2.08 9.99 22.34 0.22 -1.86 16 21 C 0.07 1.70 7.29 22.36 0.16 1.86 16 22 F -0.13 -2.87 17.26 44.97 0.78 -2.10 16 23 C -0.10 -2.47 10.08 22.48 0.23 -2.24 16 24 C -0.14 -4.71 6.38 -20.21 -0.13 -4.83 16 25 C -0.08 -3.00 6.34 -18.59 -0.12 -3.12 16 26 C -0.10 -3.06 9.39 71.24 0.67 -2.39 16 27 H 0.25 5.59 7.80 -4.43 -0.03 5.55 16 28 H 0.11 3.82 5.62 -2.39 -0.01 3.81 16 29 H 0.09 3.46 4.24 -2.39 -0.01 3.45 16 30 H 0.30 13.02 8.31 -92.71 -0.77 12.25 16 31 H 0.17 3.57 8.06 -2.91 -0.02 3.55 16 32 H 0.19 2.37 8.06 -2.91 -0.02 2.34 16 33 H 0.17 3.31 8.06 -2.91 -0.02 3.28 16 34 H 0.09 2.57 8.14 -2.38 -0.02 2.55 16 35 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.08 2.44 4.68 -2.39 -0.01 2.43 16 Total: -1.00 -67.75 332.39 3.96 -63.79 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: 1.02 Total: 20.86 kcal Atomic # 6 Polarization: -54.25 SS G_CDS: 5.36 Total: -48.89 kcal Atomic # 7 Polarization: -76.90 SS G_CDS: -0.54 Total: -77.43 kcal Atomic # 8 Polarization: -109.10 SS G_CDS: -4.15 Total: -113.24 kcal Atomic # 9 Polarization: -2.87 SS G_CDS: 0.78 Total: -2.10 kcal Atomic # 14 Polarization: 35.01 SS G_CDS: 1.80 Total: 36.81 kcal Atomic # 16 Polarization: 120.52 SS G_CDS: -0.32 Total: 120.20 kcal Total: -67.75 3.96 -63.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490865494.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.865 kcal (2) G-P(sol) polarization free energy of solvation -67.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds