Wall clock time and date at job start Tue Mar 31 2020 19:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86804 * 119.99674 * 2 1 4 4 H 1.48498 * 109.47045 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46777 * 299.99737 * 3 2 1 6 6 H 1.48504 * 109.47337 * 59.99637 * 3 2 1 7 7 C 1.40029 * 120.00591 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00041 * 170.15557 * 7 2 1 9 9 C 1.41542 * 119.99695 * 350.16192 * 7 2 1 10 10 C 1.41179 * 120.99451 * 153.72708 * 9 7 2 11 11 C 1.37593 * 119.01997 * 180.02562 * 10 9 7 12 12 N 1.32085 * 121.10820 * 0.02562 * 11 10 9 13 13 C 1.32475 * 122.23208 * 359.65772 * 12 11 10 14 14 N 1.39388 * 119.58625 * 180.31716 * 13 12 11 15 15 C 1.34775 * 119.99600 * 5.68365 * 14 13 12 16 16 O 1.21611 * 120.00420 * 5.08344 * 15 14 13 17 17 C 1.47347 * 120.00016 * 185.08586 * 15 14 13 18 18 C 1.36442 * 127.19286 * 359.68473 * 17 15 14 19 19 O 1.33651 * 108.39177 * 179.83669 * 18 17 15 20 20 C 1.34219 * 110.91195 * 0.44793 * 19 18 17 21 21 S 1.76193 * 125.43755 * 179.74803 * 20 19 18 22 22 N 1.65599 * 107.21861 * 269.97582 * 21 20 19 23 23 O 1.42101 * 106.40287 * 23.51623 * 21 20 19 24 24 O 1.42100 * 106.40359 * 156.43371 * 21 20 19 25 25 C 1.34176 * 109.12908 * 359.72573 * 20 19 18 26 26 C 1.38620 * 120.83365 * 0.63855 * 13 12 11 27 27 H 0.96998 * 120.00228 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.49533 * 0.04024 * 10 9 7 29 29 H 1.07997 * 119.44418 * 180.02562 * 11 10 9 30 30 H 0.96996 * 120.00662 * 185.68268 * 14 13 12 31 31 H 1.08003 * 125.80083 * 0.02562 * 18 17 15 32 32 H 0.96999 * 120.00293 * 149.99871 * 22 21 20 33 33 H 0.96994 * 120.00083 * 329.99804 * 22 21 20 34 34 H 1.07995 * 127.02417 * 180.02562 * 25 20 19 35 35 H 1.08001 * 120.60369 * 179.67177 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7014 1.3465 -0.0006 5 1 1.8826 2.3964 -1.2126 6 1 1.8825 2.3966 1.2125 7 6 2.0077 -1.2126 0.0005 8 1 3.0757 -1.2195 -0.1594 9 6 1.3157 -2.4293 0.2105 10 6 1.8139 -3.6469 -0.3019 11 6 1.1078 -4.8056 -0.0740 12 7 -0.0209 -4.7933 0.6119 13 6 -0.5276 -3.6792 1.1188 14 7 -1.7196 -3.7308 1.8394 15 6 -2.2893 -4.9207 2.1151 16 8 -1.7181 -5.9521 1.8168 17 6 -3.6043 -4.9721 2.7779 18 6 -4.3672 -3.9147 3.1798 19 8 -5.4873 -4.3891 3.7334 20 6 -5.4950 -5.7312 3.7241 21 16 -6.7828 -6.7499 4.3631 22 7 -6.4290 -7.0477 5.9532 23 8 -7.9622 -5.9573 4.3561 24 8 -6.6803 -7.9965 3.6889 25 6 -4.3657 -6.1735 3.1502 26 6 0.1093 -2.4616 0.9360 27 1 -0.4850 0.8400 -0.0004 28 1 2.7357 -3.6685 -0.8642 29 1 1.4829 -5.7409 -0.4625 30 1 -2.1391 -2.9105 2.1425 31 1 -4.1109 -2.8716 3.0667 32 1 -7.1456 -7.1920 6.5908 33 1 -5.5051 -7.0779 6.2470 34 1 -4.0755 -7.2018 2.9933 35 1 -0.3098 -1.5548 1.3464 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000556692838.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:08 Heat of formation + Delta-G solvation = -78.583242 kcal Electronic energy + Delta-G solvation = -25301.202234 eV Core-core repulsion = 21199.282983 eV Total energy + Delta-G solvation = -4101.919250 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.061 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.86888 -41.21441 -39.50883 -38.45147 -37.15635 -36.18991 -35.61126 -34.27703 -34.14855 -32.49021 -31.79976 -30.19113 -27.94075 -25.54528 -23.88369 -23.65345 -22.89838 -21.75392 -20.62625 -20.07461 -19.52757 -18.62303 -18.12926 -17.85623 -17.41849 -17.35567 -16.99050 -16.91442 -16.38109 -16.10217 -16.06748 -15.72385 -15.42592 -14.70543 -14.51249 -14.37686 -14.23886 -14.00403 -13.44228 -13.38081 -13.30515 -13.18780 -12.90062 -12.87053 -12.72549 -12.14808 -11.87409 -11.60679 -11.48243 -11.31417 -11.30082 -11.21809 -10.52408 -9.96054 -9.68857 -8.93481 -8.60681 -6.59297 -0.93637 -0.15091 0.19713 0.87867 0.97754 1.42641 1.49519 1.55438 1.56595 1.90320 2.14889 2.19917 2.21863 2.49785 2.81895 3.23817 3.48797 3.55203 3.71070 3.76164 4.05562 4.24950 4.51700 4.68400 4.74019 4.79503 4.90335 5.05797 5.21197 5.23418 5.37434 5.44145 5.56844 5.90406 6.10122 6.29016 6.41039 6.52448 6.76447 6.82596 7.14360 7.77060 8.27824 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.022638 B = 0.002386 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.555517 B =11732.544536 C =12737.018192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.038 3.962 3 Si 0.989 3.011 4 H -0.260 1.260 5 H -0.268 1.268 6 H -0.261 1.261 7 C -0.480 4.480 8 H 0.083 0.917 9 C 0.111 3.889 10 C -0.293 4.293 11 C 0.112 3.888 12 N -0.581 5.581 13 C 0.331 3.669 14 N -0.643 5.643 15 C 0.572 3.428 16 O -0.522 6.522 17 C -0.276 4.276 18 C 0.102 3.898 19 O -0.116 6.116 20 C -0.580 4.580 21 S 2.771 3.229 22 N -1.224 6.224 23 O -0.973 6.973 24 O -0.964 6.964 25 C -0.039 4.039 26 C -0.250 4.250 27 H 0.292 0.708 28 H 0.117 0.883 29 H 0.150 0.850 30 H 0.424 0.576 31 H 0.269 0.731 32 H 0.437 0.563 33 H 0.432 0.568 34 H 0.182 0.818 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.356 -3.156 13.181 18.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.178 4.178 3 Si 0.810 3.190 4 H -0.184 1.184 5 H -0.193 1.193 6 H -0.185 1.185 7 C -0.511 4.511 8 H 0.101 0.899 9 C 0.103 3.897 10 C -0.317 4.317 11 C -0.041 4.041 12 N -0.301 5.301 13 C 0.105 3.895 14 N -0.290 5.290 15 C 0.360 3.640 16 O -0.396 6.396 17 C -0.281 4.281 18 C 0.027 3.973 19 O -0.008 6.008 20 C -0.706 4.706 21 S 2.849 3.151 22 N -0.906 5.906 23 O -0.963 6.963 24 O -0.954 6.954 25 C -0.060 4.060 26 C -0.276 4.276 27 H 0.103 0.897 28 H 0.135 0.865 29 H 0.167 0.833 30 H 0.263 0.737 31 H 0.284 0.716 32 H 0.272 0.728 33 H 0.262 0.738 34 H 0.200 0.800 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -13.675 -4.653 12.570 19.149 hybrid contribution 1.803 1.873 -0.177 2.606 sum -11.873 -2.780 12.393 17.386 Atomic orbital electron populations 1.69753 1.08780 1.30820 1.34739 1.26781 0.95734 1.04416 0.90911 0.85043 0.79210 0.75770 0.79015 1.18404 1.19253 1.18503 1.19888 0.96194 0.90864 1.44173 0.89928 1.18040 0.91256 0.93304 0.87118 1.22135 1.04875 0.94254 1.10444 1.22194 0.90129 0.97621 0.94204 1.67283 1.15912 1.28847 1.18088 1.18352 0.87415 0.90531 0.93163 1.43132 1.22421 1.09550 1.53872 1.17699 0.84276 0.83531 0.78520 1.90853 1.63702 1.33940 1.51115 1.21618 0.98158 0.95212 1.13096 1.25879 0.81821 1.00970 0.88587 1.83968 1.36916 1.18372 1.61566 1.35462 1.20008 0.91418 1.23758 1.00030 0.70168 0.72038 0.72871 1.52629 1.19250 1.90744 1.28005 1.93581 1.45213 1.70866 1.86632 1.93674 1.85386 1.41199 1.75108 1.23179 0.90420 1.00860 0.91590 1.21656 1.01272 0.95684 1.08976 0.89652 0.86523 0.83305 0.73732 0.71569 0.72837 0.73767 0.80024 0.84799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -37.84 10.70 21.84 0.23 -37.60 16 2 C 0.04 1.74 5.31 85.29 0.45 2.19 16 3 Si 0.99 34.54 29.57 68.60 2.03 36.57 16 4 H -0.26 -9.05 7.11 99.48 0.71 -8.35 16 5 H -0.27 -9.08 7.11 99.48 0.71 -8.37 16 6 H -0.26 -8.60 7.11 99.48 0.71 -7.90 16 7 C -0.48 -24.05 9.14 23.52 0.21 -23.83 16 8 H 0.08 3.99 7.87 -2.91 -0.02 3.96 16 9 C 0.11 5.76 5.60 -21.11 -0.12 5.64 16 10 C -0.29 -14.25 9.90 22.84 0.23 -14.02 16 11 C 0.11 5.34 11.15 84.50 0.94 6.28 16 12 N -0.58 -29.56 7.89 -193.57 -1.53 -31.09 16 13 C 0.33 15.67 7.40 132.78 0.98 16.65 16 14 N -0.64 -23.66 5.37 -311.70 -1.68 -25.34 16 15 C 0.57 21.21 7.76 86.64 0.67 21.88 16 16 O -0.52 -24.31 15.27 -4.07 -0.06 -24.37 16 17 C -0.28 -7.35 6.31 -18.99 -0.12 -7.47 16 18 C 0.10 1.83 11.61 67.40 0.78 2.61 16 19 O -0.12 -2.19 10.52 4.44 0.05 -2.15 16 20 C -0.58 -11.27 7.32 66.89 0.49 -10.78 16 21 S 2.77 43.85 6.43 -56.49 -0.36 43.48 16 22 N -1.22 -7.96 9.52 37.02 0.35 -7.61 16 23 O -0.97 -21.35 18.02 -127.90 -2.30 -23.65 16 24 O -0.96 -21.51 17.82 -128.00 -2.28 -23.79 16 25 C -0.04 -0.93 10.70 23.65 0.25 -0.68 16 26 C -0.25 -12.33 8.61 22.99 0.20 -12.14 16 27 H 0.29 12.02 8.29 -92.71 -0.77 11.25 16 28 H 0.12 5.17 8.06 -2.91 -0.02 5.14 16 29 H 0.15 6.11 8.06 -2.91 -0.02 6.09 16 30 H 0.42 11.60 7.68 -92.71 -0.71 10.89 16 31 H 0.27 2.18 7.48 -2.91 -0.02 2.16 16 32 H 0.44 1.04 8.96 -96.75 -0.87 0.17 16 33 H 0.43 1.15 8.96 -96.75 -0.87 0.28 16 34 H 0.18 4.15 8.06 -2.91 -0.02 4.13 16 35 H 0.13 6.43 6.11 -2.91 -0.02 6.41 16 Total: -1.00 -81.56 332.78 -1.80 -83.36 By element: Atomic # 1 Polarization: 27.09 SS G_CDS: -1.23 Total: 25.86 kcal Atomic # 6 Polarization: -18.64 SS G_CDS: 4.98 Total: -13.66 kcal Atomic # 7 Polarization: -99.03 SS G_CDS: -2.62 Total: -101.64 kcal Atomic # 8 Polarization: -69.36 SS G_CDS: -4.60 Total: -73.96 kcal Atomic # 14 Polarization: 34.54 SS G_CDS: 2.03 Total: 36.57 kcal Atomic # 16 Polarization: 43.85 SS G_CDS: -0.36 Total: 43.48 kcal Total: -81.56 -1.80 -83.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000556692838.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.777 kcal (2) G-P(sol) polarization free energy of solvation -81.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds