Wall clock time and date at job start Tue Mar 31 2020 19:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86799 * 119.99914 * 2 1 4 4 H 1.48501 * 109.47315 * 270.00432 * 3 2 1 5 5 H 1.48509 * 109.46858 * 30.00340 * 3 2 1 6 6 H 1.48500 * 109.47415 * 149.99934 * 3 2 1 7 7 C 1.38800 * 120.00227 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99714 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99885 * 359.97438 * 7 2 1 10 10 C 1.81003 * 99.99913 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47131 * 180.02562 * 10 9 7 12 12 O 1.21277 * 119.99907 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99954 * 179.97438 * 11 10 9 14 14 C 1.39397 * 119.99641 * 175.18479 * 13 11 10 15 15 C 1.39098 * 120.03773 * 185.08737 * 14 13 11 16 16 N 1.32038 * 120.04039 * 179.97438 * 15 14 13 17 17 C 1.32092 * 120.14310 * 359.97438 * 16 15 14 18 18 C 1.38954 * 120.08172 * 0.02562 * 17 16 15 19 19 O 1.35679 * 120.02168 * 180.02562 * 18 17 16 20 20 C 1.42895 * 117.00281 * 179.97438 * 19 18 17 21 21 C 1.53004 * 109.47357 * 179.97438 * 20 19 18 22 22 F 1.39897 * 109.46690 * 60.00155 * 21 20 19 23 23 F 1.39902 * 109.46972 * 179.97438 * 21 20 19 24 24 F 1.39900 * 109.47227 * 300.00094 * 21 20 19 25 25 N 1.32581 * 119.95813 * 359.70110 * 18 17 16 26 26 H 0.96997 * 120.00104 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47701 * 59.99494 * 10 9 7 28 28 H 1.09007 * 109.46604 * 299.99861 * 10 9 7 29 29 H 0.96997 * 120.00171 * 354.90245 * 13 11 10 30 30 H 1.08001 * 119.97816 * 359.95557 * 15 14 13 31 31 H 1.07999 * 119.95816 * 180.02562 * 17 16 15 32 32 H 1.08994 * 109.47330 * 299.99979 * 20 19 18 33 33 H 1.09004 * 109.46941 * 59.99679 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7002 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0904 -1.2019 -0.0001 9 16 1.1294 -2.7280 -0.0005 10 6 2.5160 -3.8914 -0.0005 11 6 1.9876 -5.3027 -0.0012 12 8 0.7913 -5.5022 -0.0011 13 7 2.8444 -6.3431 -0.0018 14 6 2.3588 -7.6458 0.0989 15 6 3.2448 -8.7129 0.2050 16 7 2.7850 -9.9469 0.3009 17 6 1.4833 -10.1719 0.2971 18 6 0.5933 -9.1100 0.1914 19 8 -0.7434 -9.3425 0.1880 20 6 -1.5997 -8.2039 0.0770 21 6 -3.0599 -8.6606 0.0899 22 9 -3.3282 -9.3307 1.2882 23 9 -3.8981 -7.5457 -0.0183 24 9 -3.2884 -9.5227 -0.9879 25 7 1.0510 -7.8690 0.1003 26 1 -0.4850 0.8400 0.0004 27 1 3.1247 -3.7313 0.8893 28 1 3.1245 -3.7312 -0.8906 29 1 3.7986 -6.1855 -0.0765 30 1 4.3096 -8.5319 0.2085 31 1 1.1105 -11.1823 0.3761 32 1 -1.4214 -7.5319 0.9165 33 1 -1.3908 -7.6819 -0.8568 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598871605.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:17 Heat of formation + Delta-G solvation = -158.925668 kcal Electronic energy + Delta-G solvation = -25919.068802 eV Core-core repulsion = 21271.808903 eV Total energy + Delta-G solvation = -4647.259900 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.049 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.30039 -47.82819 -47.78346 -41.73763 -39.68791 -38.69024 -35.33632 -33.76267 -32.53639 -31.39459 -29.98965 -28.82259 -25.64527 -25.19930 -24.07243 -23.37382 -20.97221 -19.68787 -18.85935 -18.49678 -18.40316 -17.84170 -17.23124 -17.02926 -16.74681 -16.63991 -16.09562 -15.50815 -14.89792 -14.69872 -14.69596 -14.27866 -14.25489 -14.20598 -14.10657 -13.93329 -13.92334 -13.57501 -13.23031 -12.72820 -12.57362 -12.13014 -12.04171 -11.66661 -11.57551 -11.15687 -11.12171 -10.87684 -10.21822 -10.17018 -9.94533 -9.19544 -9.16737 -8.50625 -8.41145 -6.64755 -6.32442 -4.05026 0.55634 0.88617 1.87324 2.41081 2.71332 2.72892 3.12717 3.15823 3.23220 3.34065 3.50323 3.50933 3.76961 3.78711 4.03231 4.08938 4.14489 4.23469 4.82980 4.85469 4.89231 5.02807 5.03517 5.06338 5.43913 5.56973 5.64672 5.91529 6.08028 6.46458 6.74847 7.18254 7.49283 7.54581 8.17943 8.24314 9.13236 10.74953 Molecular weight = 337.05amu Principal moments of inertia in cm(-1) A = 0.012078 B = 0.003065 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.673458 B = 9133.962184 C =11262.850320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.075 3.925 3 Si 0.920 3.080 4 H -0.276 1.276 5 H -0.281 1.281 6 H -0.272 1.272 7 C -0.539 4.539 8 H 0.074 0.926 9 S -0.055 6.055 10 C -0.154 4.154 11 C 0.522 3.478 12 O -0.449 6.449 13 N -0.657 5.657 14 C 0.373 3.627 15 C -0.023 4.023 16 N -0.375 5.375 17 C 0.001 3.999 18 C 0.312 3.688 19 O -0.286 6.286 20 C 0.026 3.974 21 C 0.465 3.535 22 F -0.176 7.176 23 F -0.166 7.166 24 F -0.177 7.177 25 N -0.495 5.495 26 H 0.270 0.730 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.423 0.577 30 H 0.175 0.825 31 H 0.178 0.822 32 H 0.121 0.879 33 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.534 -19.295 0.136 19.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.135 4.135 3 Si 0.746 3.254 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.687 4.687 8 H 0.092 0.908 9 S 0.171 5.829 10 C -0.304 4.304 11 C 0.308 3.692 12 O -0.316 6.316 13 N -0.305 5.305 14 C 0.138 3.862 15 C -0.188 4.188 16 N -0.088 5.088 17 C -0.162 4.162 18 C 0.129 3.871 19 O -0.191 6.191 20 C -0.052 4.052 21 C 0.410 3.590 22 F -0.158 7.158 23 F -0.147 7.147 24 F -0.158 7.158 25 N -0.230 5.230 26 H 0.080 0.920 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.261 0.739 30 H 0.192 0.808 31 H 0.195 0.805 32 H 0.139 0.861 33 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.129 -19.632 0.176 19.665 hybrid contribution 2.134 1.693 -0.080 2.725 sum 3.263 -17.939 0.096 18.234 Atomic orbital electron populations 1.70000 1.05986 1.27676 1.46471 1.24993 0.95037 0.99103 0.94319 0.86150 0.79410 0.81419 0.78428 1.20194 1.20686 1.19632 1.22839 0.94927 0.91392 1.59513 0.90753 1.85427 1.04193 0.96447 1.96791 1.23574 1.07264 0.94088 1.05524 1.20756 0.86736 0.86063 0.75647 1.90765 1.14675 1.84547 1.41569 1.43979 1.11975 1.02540 1.72053 1.19244 0.88397 0.86880 0.91721 1.23042 1.01005 0.87264 1.07458 1.68376 1.13275 1.21323 1.05849 1.22636 0.87357 0.99331 1.06840 1.20663 0.84544 0.89946 0.91987 1.86183 1.12685 1.32773 1.87499 1.23753 0.83679 0.88472 1.09257 1.20075 0.89441 0.75400 0.74070 1.93221 1.95090 1.81109 1.46358 1.93263 1.73227 1.52401 1.95815 1.93220 1.95699 1.71057 1.55838 1.67961 1.14907 1.20684 1.19462 0.92034 0.88568 0.88622 0.73930 0.80779 0.80495 0.86070 0.86220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.20 13.22 55.49 0.73 -24.46 16 2 C 0.08 2.06 5.49 -17.43 -0.10 1.96 16 3 Si 0.92 20.58 29.55 -169.99 -5.02 15.56 16 4 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 7 C -0.54 -14.53 9.50 30.94 0.29 -14.23 16 8 H 0.07 1.88 7.80 -52.48 -0.41 1.48 16 9 S -0.05 -1.38 20.57 -107.50 -2.21 -3.60 16 10 C -0.15 -2.72 6.16 36.00 0.22 -2.49 16 11 C 0.52 8.53 7.81 -10.99 -0.09 8.44 16 12 O -0.45 -8.98 14.15 5.56 0.08 -8.91 16 13 N -0.66 -7.50 5.39 -11.34 -0.06 -7.56 16 14 C 0.37 4.51 7.42 -154.41 -1.15 3.37 16 15 C -0.02 -0.22 11.07 -17.14 -0.19 -0.41 16 16 N -0.37 -3.95 10.48 -12.76 -0.13 -4.09 16 17 C 0.00 0.01 11.16 -17.17 -0.19 -0.18 16 18 C 0.31 3.86 7.49 -16.96 -0.13 3.73 16 19 O -0.29 -3.43 10.01 -18.74 -0.19 -3.62 16 20 C 0.03 0.31 5.28 37.16 0.20 0.51 16 21 C 0.46 5.38 3.32 37.16 0.12 5.51 16 22 F -0.18 -2.10 17.26 2.25 0.04 -2.06 16 23 F -0.17 -2.07 17.32 2.25 0.04 -2.03 16 24 F -0.18 -2.08 17.26 2.25 0.04 -2.05 16 25 N -0.49 -7.06 6.96 -12.24 -0.09 -7.14 16 26 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 27 H 0.10 1.54 8.14 -51.92 -0.42 1.12 16 28 H 0.10 1.51 8.14 -51.91 -0.42 1.09 16 29 H 0.42 2.94 8.71 -40.82 -0.36 2.59 16 30 H 0.18 0.99 8.06 -52.49 -0.42 0.57 16 31 H 0.18 1.35 8.06 -52.49 -0.42 0.93 16 32 H 0.12 1.54 8.11 -51.93 -0.42 1.12 16 33 H 0.12 1.49 8.11 -51.93 -0.42 1.06 16 LS Contribution 331.65 15.07 5.00 5.00 Total: -1.00 -33.61 331.65 -5.21 -38.82 By element: Atomic # 1 Polarization: 2.37 SS G_CDS: -2.43 Total: -0.06 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: -1.00 Total: 6.20 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: 0.45 Total: -43.26 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: -0.11 Total: -12.52 kcal Atomic # 9 Polarization: -6.26 SS G_CDS: 0.12 Total: -6.14 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 16 Polarization: -1.38 SS G_CDS: -2.21 Total: -3.60 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.61 -5.21 -38.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598871605.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.107 kcal (2) G-P(sol) polarization free energy of solvation -33.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds