Wall clock time and date at job start Tue Mar 31 2020 19:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86799 * 119.99914 * 2 1 4 4 H 1.48501 * 109.47315 * 270.00432 * 3 2 1 5 5 H 1.48509 * 109.46858 * 30.00340 * 3 2 1 6 6 H 1.48500 * 109.47415 * 149.99934 * 3 2 1 7 7 C 1.38800 * 120.00227 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99714 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99885 * 359.97438 * 7 2 1 10 10 C 1.81003 * 99.99913 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47131 * 180.02562 * 10 9 7 12 12 O 1.21277 * 119.99907 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99954 * 179.97438 * 11 10 9 14 14 C 1.39397 * 119.99641 * 175.18479 * 13 11 10 15 15 C 1.39098 * 120.03773 * 185.08737 * 14 13 11 16 16 N 1.32038 * 120.04039 * 179.97438 * 15 14 13 17 17 C 1.32092 * 120.14310 * 359.97438 * 16 15 14 18 18 C 1.38954 * 120.08172 * 0.02562 * 17 16 15 19 19 O 1.35679 * 120.02168 * 180.02562 * 18 17 16 20 20 C 1.42895 * 117.00281 * 179.97438 * 19 18 17 21 21 C 1.53004 * 109.47357 * 179.97438 * 20 19 18 22 22 F 1.39897 * 109.46690 * 60.00155 * 21 20 19 23 23 F 1.39902 * 109.46972 * 179.97438 * 21 20 19 24 24 F 1.39900 * 109.47227 * 300.00094 * 21 20 19 25 25 N 1.32581 * 119.95813 * 359.70110 * 18 17 16 26 26 H 0.96997 * 120.00104 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47701 * 59.99494 * 10 9 7 28 28 H 1.09007 * 109.46604 * 299.99861 * 10 9 7 29 29 H 0.96997 * 120.00171 * 354.90245 * 13 11 10 30 30 H 1.08001 * 119.97816 * 359.95557 * 15 14 13 31 31 H 1.07999 * 119.95816 * 180.02562 * 17 16 15 32 32 H 1.08994 * 109.47330 * 299.99979 * 20 19 18 33 33 H 1.09004 * 109.46941 * 59.99679 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7002 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0904 -1.2019 -0.0001 9 16 1.1294 -2.7280 -0.0005 10 6 2.5160 -3.8914 -0.0005 11 6 1.9876 -5.3027 -0.0012 12 8 0.7913 -5.5022 -0.0011 13 7 2.8444 -6.3431 -0.0018 14 6 2.3588 -7.6458 0.0989 15 6 3.2448 -8.7129 0.2050 16 7 2.7850 -9.9469 0.3009 17 6 1.4833 -10.1719 0.2971 18 6 0.5933 -9.1100 0.1914 19 8 -0.7434 -9.3425 0.1880 20 6 -1.5997 -8.2039 0.0770 21 6 -3.0599 -8.6606 0.0899 22 9 -3.3282 -9.3307 1.2882 23 9 -3.8981 -7.5457 -0.0183 24 9 -3.2884 -9.5227 -0.9879 25 7 1.0510 -7.8690 0.1003 26 1 -0.4850 0.8400 0.0004 27 1 3.1247 -3.7313 0.8893 28 1 3.1245 -3.7312 -0.8906 29 1 3.7986 -6.1855 -0.0765 30 1 4.3096 -8.5319 0.2085 31 1 1.1105 -11.1823 0.3761 32 1 -1.4214 -7.5319 0.9165 33 1 -1.3908 -7.6819 -0.8568 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598871605.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:16 Heat of formation + Delta-G solvation = -183.462115 kcal Electronic energy + Delta-G solvation = -25920.132782 eV Core-core repulsion = 21271.808903 eV Total energy + Delta-G solvation = -4648.323880 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.049 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -51.29078 -48.83015 -48.76120 -42.64891 -40.80929 -39.66263 -36.40784 -34.72567 -34.58301 -32.41126 -31.14781 -29.90269 -27.67865 -26.15962 -24.99846 -24.34867 -22.11975 -20.69069 -19.88681 -19.84043 -19.40360 -19.24170 -18.30692 -17.84056 -17.74901 -17.59571 -17.24459 -16.87487 -16.68282 -16.03010 -15.70743 -15.68409 -15.27955 -15.19798 -15.07219 -14.92342 -14.91728 -14.90954 -14.52611 -14.00801 -13.81476 -13.17587 -13.07967 -12.99507 -12.90288 -12.66941 -12.64183 -12.56918 -11.75900 -11.39632 -11.19312 -11.13540 -10.30319 -10.20873 -9.38788 -8.66607 -8.35161 -6.12675 -0.32333 0.00337 0.93632 1.16120 1.42190 1.42874 1.51479 1.54568 1.75308 1.85549 2.26523 2.53393 2.62086 2.76903 2.80837 3.00124 3.10858 3.26544 3.34747 3.41317 3.85642 3.89229 4.02362 4.08870 4.28666 4.34895 4.50346 4.78680 5.11800 5.42886 5.58876 5.83129 6.19822 6.30841 6.64942 7.06201 7.07468 8.73732 Molecular weight = 337.05amu Principal moments of inertia in cm(-1) A = 0.012078 B = 0.003065 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.673458 B = 9133.962184 C =11262.850320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.015 3.985 3 Si 0.995 3.005 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.256 1.256 7 C -0.545 4.545 8 H 0.086 0.914 9 S -0.147 6.147 10 C -0.128 4.128 11 C 0.527 3.473 12 O -0.495 6.495 13 N -0.634 5.634 14 C 0.349 3.651 15 C 0.006 3.994 16 N -0.384 5.384 17 C 0.016 3.984 18 C 0.289 3.711 19 O -0.287 6.287 20 C 0.035 3.965 21 C 0.473 3.527 22 F -0.176 7.176 23 F -0.172 7.172 24 F -0.176 7.176 25 N -0.528 5.528 26 H 0.270 0.730 27 H 0.119 0.881 28 H 0.120 0.880 29 H 0.445 0.555 30 H 0.219 0.781 31 H 0.204 0.796 32 H 0.110 0.890 33 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.543 -20.268 0.191 21.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.190 4.190 3 Si 0.817 3.183 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.180 1.180 7 C -0.693 4.693 8 H 0.104 0.896 9 S 0.080 5.920 10 C -0.279 4.279 11 C 0.313 3.687 12 O -0.365 6.365 13 N -0.285 5.285 14 C 0.114 3.886 15 C -0.158 4.158 16 N -0.098 5.098 17 C -0.146 4.146 18 C 0.107 3.893 19 O -0.193 6.193 20 C -0.043 4.043 21 C 0.419 3.581 22 F -0.158 7.158 23 F -0.153 7.153 24 F -0.157 7.157 25 N -0.263 5.263 26 H 0.079 0.921 27 H 0.137 0.863 28 H 0.138 0.862 29 H 0.288 0.712 30 H 0.235 0.765 31 H 0.221 0.779 32 H 0.128 0.872 33 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 4.195 -20.657 0.230 21.080 hybrid contribution 1.290 1.803 -0.093 2.219 sum 5.485 -18.855 0.137 19.637 Atomic orbital electron populations 1.70170 1.07977 1.28585 1.48072 1.26078 0.95877 1.03246 0.93779 0.84994 0.78304 0.76221 0.78736 1.19422 1.20646 1.18011 1.23215 0.95480 0.91885 1.58747 0.89559 1.85607 1.10062 0.99191 1.97094 1.23378 1.03983 0.92866 1.07715 1.20461 0.86494 0.86479 0.75305 1.90767 1.16616 1.85123 1.43966 1.43476 1.12467 1.01454 1.71104 1.19518 0.88298 0.87337 0.93438 1.23670 1.02449 0.85900 1.03815 1.68542 1.13072 1.21566 1.06587 1.23080 0.87116 0.99870 1.04491 1.20912 0.84716 0.90031 0.93682 1.86165 1.12882 1.32371 1.87855 1.23550 0.83968 0.88496 1.08300 1.19918 0.89055 0.75138 0.73995 1.93217 1.95070 1.81077 1.46400 1.93251 1.73412 1.52798 1.95846 1.93218 1.95672 1.70987 1.55820 1.67818 1.16646 1.22074 1.19793 0.92062 0.86322 0.86224 0.71223 0.76460 0.77925 0.87221 0.87072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.36 13.22 21.65 0.29 -54.08 16 2 C 0.02 0.83 5.49 84.86 0.47 1.29 16 3 Si 1.00 41.94 29.55 68.60 2.03 43.97 16 4 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 5 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 6 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 7 C -0.55 -29.42 9.50 67.95 0.65 -28.77 16 8 H 0.09 4.26 7.80 -2.91 -0.02 4.24 16 9 S -0.15 -7.56 20.57 -56.49 -1.16 -8.72 16 10 C -0.13 -4.36 6.16 71.23 0.44 -3.92 16 11 C 0.53 16.77 7.81 87.66 0.68 17.45 16 12 O -0.50 -20.26 14.15 -3.02 -0.04 -20.30 16 13 N -0.63 -12.98 5.39 -308.19 -1.66 -14.65 16 14 C 0.35 7.73 7.42 132.84 0.99 8.72 16 15 C 0.01 0.10 11.07 84.87 0.94 1.04 16 16 N -0.38 -6.87 10.48 -194.28 -2.04 -8.90 16 17 C 0.02 0.30 11.16 84.83 0.95 1.24 16 18 C 0.29 6.95 7.49 84.75 0.63 7.58 16 19 O -0.29 -6.89 10.01 -89.97 -0.90 -7.80 16 20 C 0.03 0.87 5.28 71.98 0.38 1.25 16 21 C 0.47 11.24 3.32 71.98 0.24 11.48 16 22 F -0.18 -4.22 17.26 44.97 0.78 -3.45 16 23 F -0.17 -4.45 17.32 44.97 0.78 -3.67 16 24 F -0.18 -4.15 17.26 44.97 0.78 -3.38 16 25 N -0.53 -14.84 6.96 -305.34 -2.12 -16.97 16 26 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 27 H 0.12 3.52 8.14 -2.40 -0.02 3.50 16 28 H 0.12 3.51 8.14 -2.39 -0.02 3.49 16 29 H 0.45 4.53 8.71 -92.71 -0.81 3.72 16 30 H 0.22 1.29 8.06 -2.91 -0.02 1.27 16 31 H 0.20 2.55 8.06 -2.91 -0.02 2.52 16 32 H 0.11 3.00 8.11 -2.39 -0.02 2.98 16 33 H 0.11 2.96 8.11 -2.39 -0.02 2.94 16 Total: -1.00 -75.64 331.65 3.47 -72.17 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: 0.40 Total: 8.40 kcal Atomic # 6 Polarization: 11.00 SS G_CDS: 6.36 Total: 17.36 kcal Atomic # 7 Polarization: -89.05 SS G_CDS: -5.54 Total: -94.59 kcal Atomic # 8 Polarization: -27.16 SS G_CDS: -0.94 Total: -28.10 kcal Atomic # 9 Polarization: -12.83 SS G_CDS: 2.33 Total: -10.50 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Atomic # 16 Polarization: -7.56 SS G_CDS: -1.16 Total: -8.72 kcal Total: -75.64 3.47 -72.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598871605.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.291 kcal (2) G-P(sol) polarization free energy of solvation -75.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds