Wall clock time and date at job start Tue Mar 31 2020 20:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 120.00555 * 2 1 4 4 H 1.48492 * 109.47167 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46881 * 299.99910 * 3 2 1 6 6 H 1.48496 * 109.46817 * 59.99782 * 3 2 1 7 7 C 1.37879 * 119.99979 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00673 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99660 * 359.97438 * 7 2 1 10 10 O 1.42897 * 110.64102 * 298.31326 * 9 7 2 11 11 C 1.55163 * 110.71832 * 61.45938 * 9 7 2 12 12 C 1.54908 * 101.58265 * 153.86498 * 11 9 7 13 13 N 1.47425 * 104.83099 * 322.98582 * 12 11 9 14 14 S 1.65598 * 125.64939 * 204.09458 * 13 12 11 15 15 O 1.42100 * 106.40232 * 336.48251 * 14 13 12 16 16 O 1.42106 * 106.40132 * 203.56531 * 14 13 12 17 17 C 1.76194 * 107.22112 * 90.02599 * 14 13 12 18 18 C 1.34512 * 125.79281 * 89.99757 * 17 14 13 19 19 C 1.41379 * 106.84086 * 179.97438 * 18 17 14 20 20 C 1.34512 * 106.84332 * 0.02562 * 19 18 17 21 21 C 1.50696 * 125.79090 * 180.02562 * 20 19 18 22 22 F 1.39900 * 109.47242 * 210.02184 * 21 20 19 23 23 F 1.39902 * 109.47066 * 330.02316 * 21 20 19 24 24 O 1.34301 * 108.41872 * 359.97438 * 20 19 18 25 25 C 1.47025 * 108.70455 * 24.35917 * 13 12 11 26 26 H 0.97000 * 119.99653 * 0.02562 * 1 2 3 27 27 H 0.96698 * 113.99829 * 61.69193 * 10 9 7 28 28 H 1.08992 * 111.00448 * 35.78609 * 11 9 7 29 29 H 1.09000 * 111.03109 * 271.94855 * 11 9 7 30 30 H 1.09000 * 110.36452 * 204.14959 * 12 11 9 31 31 H 1.09002 * 110.36661 * 81.82618 * 12 11 9 32 32 H 1.07997 * 126.57601 * 0.02562 * 18 17 14 33 33 H 1.08007 * 126.57622 * 179.97438 * 19 18 17 34 34 H 1.08996 * 109.47425 * 90.02019 * 21 20 19 35 35 H 1.09000 * 109.88239 * 118.12772 * 25 13 12 36 36 H 1.09003 * 109.88096 * 239.29633 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3462 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2508 -2.4992 0.0017 10 8 0.4502 -2.6175 1.1794 11 6 0.3754 -2.6287 -1.2728 12 6 0.2707 -4.1669 -1.4233 13 7 1.5920 -4.6768 -1.0142 14 16 2.2553 -6.1212 -1.4791 15 8 1.1695 -6.9638 -1.8397 16 8 3.2078 -6.4648 -0.4820 17 6 3.1673 -5.8247 -2.9572 18 6 4.4643 -5.4744 -3.0244 19 6 4.7821 -5.3416 -4.3956 20 6 3.6602 -5.6182 -5.0843 21 6 3.5211 -5.6039 -6.5848 22 9 2.2093 -5.2595 -6.9282 23 9 4.4065 -4.6657 -7.1263 24 8 2.6855 -5.9103 -4.2079 25 6 2.2207 -3.6936 -0.1199 26 1 -0.4849 0.8401 -0.0004 27 1 -0.2279 -1.9333 1.2643 28 1 0.8726 -2.1847 -2.1351 29 1 -0.6076 -2.1834 -1.1191 30 1 0.0655 -4.4335 -2.4600 31 1 -0.5071 -4.5600 -0.7685 32 1 5.1344 -5.3243 -2.1909 33 1 5.7415 -5.0695 -4.8105 34 1 3.7527 -6.5926 -6.9806 35 1 2.3886 -4.1386 0.8608 36 1 3.1672 -3.3585 -0.5443 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601452579.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:38 Heat of formation + Delta-G solvation = -193.105758 kcal Electronic energy + Delta-G solvation = -27838.898545 eV Core-core repulsion = 23281.324039 eV Total energy + Delta-G solvation = -4557.574506 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.067 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.51341 -47.53305 -42.97103 -38.17849 -37.23899 -35.86576 -34.40021 -33.59201 -32.25035 -31.53684 -29.26666 -28.39560 -26.63664 -24.92361 -22.54886 -21.93360 -21.49744 -19.89979 -19.46255 -18.46657 -18.20288 -17.65280 -17.53214 -17.35457 -16.88698 -16.17324 -15.66817 -15.00904 -14.63615 -14.52190 -14.30434 -14.18107 -14.05808 -13.83836 -13.39483 -13.34429 -13.22011 -13.09410 -12.31947 -12.18911 -12.10663 -12.05143 -11.93425 -11.77403 -11.62891 -11.38923 -11.16997 -10.91965 -10.52546 -10.49522 -10.44337 -10.18065 -9.50886 -9.39368 -8.72356 -8.61692 -8.23784 -6.32625 -4.40716 0.18978 0.74263 1.87605 2.12796 3.04387 3.15762 3.25253 3.28644 3.36569 3.62253 3.75130 4.19022 4.22946 4.29376 4.48648 4.58505 4.95348 5.03523 5.16590 5.27723 5.30348 5.71021 5.84229 5.85977 5.95923 6.15946 6.32584 6.35601 6.49418 6.64263 6.84845 6.92888 7.28564 7.33629 7.69165 7.97092 8.61440 9.26826 9.36421 10.74927 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.011767 B = 0.004274 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.000423 B = 6549.092302 C = 7802.648822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.073 3.927 3 Si 0.902 3.098 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.281 1.281 7 C -0.537 4.537 8 H 0.065 0.935 9 C 0.251 3.749 10 O -0.584 6.584 11 C -0.133 4.133 12 C 0.117 3.883 13 N -0.994 5.994 14 S 2.727 3.273 15 O -0.940 6.940 16 O -0.932 6.932 17 C -0.550 4.550 18 C -0.091 4.091 19 C -0.176 4.176 20 C -0.065 4.065 21 C 0.362 3.638 22 F -0.185 7.185 23 F -0.181 7.181 24 O -0.100 6.100 25 C 0.131 3.869 26 H 0.268 0.732 27 H 0.383 0.617 28 H 0.066 0.934 29 H 0.089 0.911 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.175 0.825 33 H 0.169 0.831 34 H 0.144 0.856 35 H 0.071 0.929 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.504 -9.941 -10.794 16.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.130 4.130 3 Si 0.729 3.271 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.207 1.207 7 C -0.575 4.575 8 H 0.083 0.917 9 C 0.210 3.790 10 O -0.393 6.393 11 C -0.173 4.173 12 C -0.007 4.007 13 N -0.836 5.836 14 S 2.809 3.191 15 O -0.930 6.930 16 O -0.923 6.923 17 C -0.678 4.678 18 C -0.112 4.112 19 C -0.195 4.195 20 C -0.120 4.120 21 C 0.309 3.691 22 F -0.166 7.166 23 F -0.162 7.162 24 O 0.007 5.993 25 C 0.007 3.993 26 H 0.078 0.922 27 H 0.233 0.767 28 H 0.085 0.915 29 H 0.108 0.892 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.193 0.807 33 H 0.186 0.814 34 H 0.161 0.839 35 H 0.090 0.910 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.413 -11.270 -10.480 16.673 hybrid contribution 0.704 2.136 -0.804 2.388 sum 7.117 -9.135 -11.284 16.168 Atomic orbital electron populations 1.69699 1.05948 1.27597 1.50024 1.24981 0.95020 0.99505 0.93461 0.86382 0.80116 0.82839 0.77742 1.19641 1.20873 1.20719 1.21553 0.93663 0.90208 1.52109 0.91703 1.19451 0.86913 0.90265 0.82379 1.86122 1.51844 1.56560 1.44778 1.23329 1.02874 0.90274 1.00776 1.22270 0.82382 0.97550 0.98546 1.58494 1.27724 1.38287 1.59090 1.01530 0.73015 0.72499 0.72059 1.93582 1.52157 1.63388 1.83854 1.93637 1.63908 1.81555 1.53165 1.36739 1.09162 1.19491 1.02390 1.22040 0.94315 0.96443 0.98406 1.21838 0.99789 1.05001 0.92911 1.23457 0.89536 1.05877 0.93160 1.19589 0.73350 0.92326 0.83885 1.93089 1.36877 1.93830 1.92824 1.93077 1.68393 1.68923 1.85822 1.84179 1.35488 1.66693 1.12923 1.21979 0.96357 0.88872 0.92048 0.92201 0.76676 0.91523 0.89237 0.91968 0.91095 0.80723 0.81394 0.83861 0.91018 0.91187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.38 10.67 55.43 0.59 -21.79 16 2 C 0.07 1.82 5.28 -17.82 -0.09 1.73 16 3 Si 0.90 19.72 29.54 -169.99 -5.02 14.70 16 4 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 5 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 6 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.54 -13.41 8.22 -34.44 -0.28 -13.70 16 8 H 0.06 1.60 7.58 -52.48 -0.40 1.20 16 9 C 0.25 5.79 0.85 -89.92 -0.08 5.71 16 10 O -0.58 -14.08 13.07 -35.23 -0.46 -14.54 16 11 C -0.13 -2.81 5.47 -24.58 -0.13 -2.94 16 12 C 0.12 2.16 6.98 -2.53 -0.02 2.14 16 13 N -0.99 -18.24 3.70 -111.41 -0.41 -18.65 16 14 S 2.73 45.82 6.09 -107.50 -0.65 45.16 16 15 O -0.94 -17.48 17.60 -57.22 -1.01 -18.48 16 16 O -0.93 -16.63 17.41 -57.17 -1.00 -17.62 16 17 C -0.55 -8.38 7.36 29.42 0.22 -8.16 16 18 C -0.09 -1.20 10.63 -39.70 -0.42 -1.62 16 19 C -0.18 -2.01 10.46 -39.70 -0.42 -2.42 16 20 C -0.07 -0.80 6.93 -35.63 -0.25 -1.05 16 21 C 0.36 3.28 5.82 36.00 0.21 3.49 16 22 F -0.19 -2.16 17.31 2.25 0.04 -2.12 16 23 F -0.18 -1.76 17.03 2.25 0.04 -1.72 16 24 O -0.10 -1.51 10.64 5.71 0.06 -1.45 16 25 C 0.13 2.66 6.35 -3.05 -0.02 2.64 16 26 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 27 H 0.38 9.27 7.46 45.56 0.34 9.61 16 28 H 0.07 1.44 8.04 -51.93 -0.42 1.02 16 29 H 0.09 1.97 7.54 -51.93 -0.39 1.58 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.18 1.92 8.06 -52.49 -0.42 1.49 16 33 H 0.17 1.39 8.06 -52.48 -0.42 0.96 16 34 H 0.14 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.07 1.45 8.07 -51.93 -0.42 1.03 16 36 H 0.07 1.32 7.66 -51.93 -0.40 0.92 16 LS Contribution 333.90 15.07 5.03 5.03 Total: -1.00 -30.15 333.90 -7.00 -37.16 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -2.93 Total: 8.52 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: -1.28 Total: -14.18 kcal Atomic # 7 Polarization: -40.62 SS G_CDS: 0.18 Total: -40.44 kcal Atomic # 8 Polarization: -49.69 SS G_CDS: -2.40 Total: -52.10 kcal Atomic # 9 Polarization: -3.92 SS G_CDS: 0.08 Total: -3.84 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal Atomic # 16 Polarization: 45.82 SS G_CDS: -0.65 Total: 45.16 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.15 -7.00 -37.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601452579.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.949 kcal (2) G-P(sol) polarization free energy of solvation -30.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds