Wall clock time and date at job start Tue Mar 31 2020 20:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 120.00555 * 2 1 4 4 H 1.48492 * 109.47167 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46881 * 299.99910 * 3 2 1 6 6 H 1.48496 * 109.46817 * 59.99782 * 3 2 1 7 7 C 1.37879 * 119.99979 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00673 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99660 * 359.97438 * 7 2 1 10 10 O 1.42897 * 110.64102 * 298.31326 * 9 7 2 11 11 C 1.55163 * 110.71832 * 61.45938 * 9 7 2 12 12 C 1.54908 * 101.58265 * 153.86498 * 11 9 7 13 13 N 1.47425 * 104.83099 * 322.98582 * 12 11 9 14 14 S 1.65598 * 125.64939 * 204.09458 * 13 12 11 15 15 O 1.42100 * 106.40232 * 336.48251 * 14 13 12 16 16 O 1.42106 * 106.40132 * 203.56531 * 14 13 12 17 17 C 1.76194 * 107.22112 * 90.02599 * 14 13 12 18 18 C 1.34512 * 125.79281 * 89.99757 * 17 14 13 19 19 C 1.41379 * 106.84086 * 179.97438 * 18 17 14 20 20 C 1.34512 * 106.84332 * 0.02562 * 19 18 17 21 21 C 1.50696 * 125.79090 * 180.02562 * 20 19 18 22 22 F 1.39900 * 109.47242 * 210.02184 * 21 20 19 23 23 F 1.39902 * 109.47066 * 330.02316 * 21 20 19 24 24 O 1.34301 * 108.41872 * 359.97438 * 20 19 18 25 25 C 1.47025 * 108.70455 * 24.35917 * 13 12 11 26 26 H 0.97000 * 119.99653 * 0.02562 * 1 2 3 27 27 H 0.96698 * 113.99829 * 61.69193 * 10 9 7 28 28 H 1.08992 * 111.00448 * 35.78609 * 11 9 7 29 29 H 1.09000 * 111.03109 * 271.94855 * 11 9 7 30 30 H 1.09000 * 110.36452 * 204.14959 * 12 11 9 31 31 H 1.09002 * 110.36661 * 81.82618 * 12 11 9 32 32 H 1.07997 * 126.57601 * 0.02562 * 18 17 14 33 33 H 1.08007 * 126.57622 * 179.97438 * 19 18 17 34 34 H 1.08996 * 109.47425 * 90.02019 * 21 20 19 35 35 H 1.09000 * 109.88239 * 118.12772 * 25 13 12 36 36 H 1.09003 * 109.88096 * 239.29633 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3462 0.0006 5 1 1.8906 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2508 -2.4992 0.0017 10 8 0.4502 -2.6175 1.1794 11 6 0.3754 -2.6287 -1.2728 12 6 0.2707 -4.1669 -1.4233 13 7 1.5920 -4.6768 -1.0142 14 16 2.2553 -6.1212 -1.4791 15 8 1.1695 -6.9638 -1.8397 16 8 3.2078 -6.4648 -0.4820 17 6 3.1673 -5.8247 -2.9572 18 6 4.4643 -5.4744 -3.0244 19 6 4.7821 -5.3416 -4.3956 20 6 3.6602 -5.6182 -5.0843 21 6 3.5211 -5.6039 -6.5848 22 9 2.2093 -5.2595 -6.9282 23 9 4.4065 -4.6657 -7.1263 24 8 2.6855 -5.9103 -4.2079 25 6 2.2207 -3.6936 -0.1199 26 1 -0.4849 0.8401 -0.0004 27 1 -0.2279 -1.9333 1.2643 28 1 0.8726 -2.1847 -2.1351 29 1 -0.6076 -2.1834 -1.1191 30 1 0.0655 -4.4335 -2.4600 31 1 -0.5071 -4.5600 -0.7685 32 1 5.1344 -5.3243 -2.1909 33 1 5.7415 -5.0695 -4.8105 34 1 3.7527 -6.5926 -6.9806 35 1 2.3886 -4.1386 0.8608 36 1 3.1672 -3.3585 -0.5443 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601452579.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:37 Heat of formation + Delta-G solvation = -215.961325 kcal Electronic energy + Delta-G solvation = -27839.889637 eV Core-core repulsion = 23281.324039 eV Total energy + Delta-G solvation = -4558.565597 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.067 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.26078 -48.29671 -43.98217 -39.84018 -38.63137 -37.26818 -36.13669 -34.58715 -34.16146 -32.46454 -30.92898 -30.06488 -27.49401 -26.73273 -23.59028 -23.32421 -22.58802 -21.64771 -20.61152 -19.70775 -19.25740 -18.95227 -18.62704 -18.33720 -18.20874 -17.25432 -17.09149 -16.88532 -16.23954 -15.97342 -15.46814 -15.12619 -15.03365 -14.99636 -14.65250 -14.61748 -14.26965 -14.01331 -13.98654 -13.81946 -13.54570 -13.50076 -13.40176 -13.18044 -12.92562 -12.85198 -12.66173 -12.64322 -12.24862 -12.21086 -11.97538 -11.45108 -11.18737 -10.61772 -10.49295 -10.13299 -10.05512 -8.21157 -6.35235 -1.11723 -0.30982 0.93166 1.20424 1.42028 1.47002 1.55690 1.75143 2.36675 2.40817 2.60602 2.93506 3.03078 3.12305 3.54743 3.62002 3.69751 3.72596 4.02149 4.06749 4.21010 4.24950 4.39189 4.45715 4.61769 4.68205 4.87661 4.96798 5.10552 5.18583 5.26253 5.38956 5.51115 5.56446 5.80545 6.11340 6.69583 7.35238 7.44849 8.85035 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.011767 B = 0.004274 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.000423 B = 6549.092302 C = 7802.648822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.035 3.965 3 Si 0.957 3.043 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.557 4.557 8 H 0.062 0.938 9 C 0.234 3.766 10 O -0.592 6.592 11 C -0.124 4.124 12 C 0.120 3.880 13 N -1.000 6.000 14 S 2.752 3.248 15 O -0.961 6.961 16 O -0.946 6.946 17 C -0.581 4.581 18 C -0.085 4.085 19 C -0.174 4.174 20 C -0.068 4.068 21 C 0.362 3.638 22 F -0.202 7.202 23 F -0.184 7.184 24 O -0.122 6.122 25 C 0.135 3.865 26 H 0.269 0.731 27 H 0.379 0.621 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.194 0.806 33 H 0.202 0.798 34 H 0.199 0.801 35 H 0.067 0.933 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.137 -10.215 -12.314 17.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.166 4.166 3 Si 0.783 3.217 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.596 4.596 8 H 0.080 0.920 9 C 0.193 3.807 10 O -0.400 6.400 11 C -0.164 4.164 12 C -0.005 4.005 13 N -0.840 5.840 14 S 2.838 3.162 15 O -0.952 6.952 16 O -0.936 6.936 17 C -0.711 4.711 18 C -0.105 4.105 19 C -0.194 4.194 20 C -0.123 4.123 21 C 0.309 3.691 22 F -0.184 7.184 23 F -0.165 7.165 24 O -0.017 6.017 25 C 0.011 3.989 26 H 0.079 0.921 27 H 0.228 0.772 28 H 0.076 0.924 29 H 0.094 0.906 30 H 0.101 0.899 31 H 0.091 0.909 32 H 0.211 0.789 33 H 0.219 0.781 34 H 0.216 0.784 35 H 0.085 0.915 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 8.026 -11.554 -11.964 18.467 hybrid contribution 0.264 2.208 -0.408 2.261 sum 8.289 -9.345 -12.372 17.582 Atomic orbital electron populations 1.69776 1.06707 1.28164 1.50113 1.25602 0.95772 1.01991 0.93271 0.85530 0.79085 0.79598 0.77513 1.19429 1.20710 1.20720 1.21825 0.93774 0.91456 1.52513 0.92016 1.19677 0.87533 0.90909 0.82561 1.86116 1.51867 1.56361 1.45676 1.23114 1.01565 0.92141 0.99543 1.22213 0.82745 0.95583 0.99913 1.58449 1.27826 1.38208 1.59526 1.00473 0.72351 0.71448 0.71963 1.93548 1.53449 1.63849 1.84345 1.93613 1.64011 1.81595 1.54402 1.36074 1.09845 1.22998 1.02206 1.22486 0.93656 0.94334 1.00072 1.22264 1.01016 1.04186 0.91897 1.24257 0.89205 1.04366 0.94476 1.20244 0.72415 0.94361 0.82104 1.93055 1.38400 1.94135 1.92765 1.93072 1.68345 1.69491 1.85566 1.84146 1.36780 1.67596 1.13132 1.21823 0.96237 0.88355 0.92496 0.92112 0.77184 0.92411 0.90637 0.89903 0.90916 0.78918 0.78074 0.78423 0.91467 0.89962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.78 10.67 21.45 0.23 -45.55 16 2 C 0.03 1.73 5.28 84.66 0.45 2.18 16 3 Si 0.96 40.17 29.54 68.60 2.03 42.20 16 4 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 5 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 6 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.56 -27.92 8.22 25.60 0.21 -27.71 16 8 H 0.06 3.04 7.58 -2.91 -0.02 3.02 16 9 C 0.23 10.87 0.85 -10.34 -0.01 10.86 16 10 O -0.59 -29.00 13.07 -148.98 -1.95 -30.95 16 11 C -0.12 -5.30 5.47 31.99 0.17 -5.12 16 12 C 0.12 4.41 6.98 86.85 0.61 5.02 16 13 N -1.00 -36.36 3.70 -506.38 -1.87 -38.23 16 14 S 2.75 90.97 6.09 -56.49 -0.34 90.63 16 15 O -0.96 -35.48 17.60 -127.96 -2.25 -37.73 16 16 O -0.95 -33.11 17.41 -128.00 -2.23 -35.34 16 17 C -0.58 -16.95 7.36 66.97 0.49 -16.46 16 18 C -0.08 -2.03 10.63 22.19 0.24 -1.80 16 19 C -0.17 -3.43 10.46 22.19 0.23 -3.20 16 20 C -0.07 -1.49 6.93 24.83 0.17 -1.32 16 21 C 0.36 5.43 5.82 71.23 0.41 5.84 16 22 F -0.20 -4.33 17.31 44.97 0.78 -3.55 16 23 F -0.18 -3.00 17.03 44.97 0.77 -2.24 16 24 O -0.12 -3.54 10.64 -2.47 -0.03 -3.56 16 25 C 0.14 5.47 6.35 86.73 0.55 6.02 16 26 H 0.27 12.99 8.31 -92.71 -0.77 12.22 16 27 H 0.38 18.79 7.46 -74.06 -0.55 18.24 16 28 H 0.06 2.52 8.04 -2.39 -0.02 2.50 16 29 H 0.08 3.40 7.54 -2.39 -0.02 3.38 16 30 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 31 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 32 H 0.19 3.75 8.06 -2.91 -0.02 3.72 16 33 H 0.20 2.46 8.06 -2.91 -0.02 2.44 16 34 H 0.20 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.07 2.73 8.07 -2.39 -0.02 2.71 16 36 H 0.08 3.06 7.66 -2.39 -0.02 3.04 16 Total: -1.00 -64.36 333.90 -0.75 -65.11 By element: Atomic # 1 Polarization: 24.33 SS G_CDS: 0.60 Total: 24.93 kcal Atomic # 6 Polarization: -29.23 SS G_CDS: 3.53 Total: -25.70 kcal Atomic # 7 Polarization: -82.14 SS G_CDS: -1.64 Total: -83.79 kcal Atomic # 8 Polarization: -101.13 SS G_CDS: -6.45 Total: -107.59 kcal Atomic # 9 Polarization: -7.33 SS G_CDS: 1.54 Total: -5.79 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 2.03 Total: 42.20 kcal Atomic # 16 Polarization: 90.97 SS G_CDS: -0.34 Total: 90.63 kcal Total: -64.36 -0.75 -65.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601452579.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.856 kcal (2) G-P(sol) polarization free energy of solvation -64.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds