Wall clock time and date at job start Tue Mar 31 2020 20:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00170 * 2 1 4 4 H 1.48504 * 109.47183 * 267.31687 * 3 2 1 5 5 H 1.48494 * 109.47367 * 27.32290 * 3 2 1 6 6 H 1.48503 * 109.47092 * 147.32092 * 3 2 1 7 7 C 1.37877 * 119.99616 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99998 * 353.53234 * 7 2 1 9 9 C 1.50699 * 120.00117 * 173.53087 * 7 2 1 10 10 O 1.42899 * 110.88570 * 328.70748 * 9 7 2 11 11 C 1.55151 * 111.00704 * 204.82993 * 9 7 2 12 12 C 1.54321 * 102.94577 * 206.38603 * 11 9 7 13 13 N 1.47031 * 107.26722 * 22.18657 * 12 11 9 14 14 S 1.65598 * 125.64700 * 181.01302 * 13 12 11 15 15 O 1.42100 * 106.40454 * 203.56828 * 14 13 12 16 16 O 1.42103 * 106.40197 * 336.49068 * 14 13 12 17 17 C 1.76202 * 107.21838 * 90.02673 * 14 13 12 18 18 C 1.34518 * 125.78542 * 89.99624 * 17 14 13 19 19 C 1.41383 * 106.83570 * 180.02562 * 18 17 14 20 20 C 1.34510 * 106.84740 * 359.97438 * 19 18 17 21 21 C 1.50696 * 125.79515 * 180.02562 * 20 19 18 22 22 F 1.39901 * 109.47261 * 300.00817 * 21 20 19 23 23 F 1.39900 * 109.46737 * 60.00431 * 21 20 19 24 24 O 1.34300 * 125.79181 * 269.69713 * 17 14 13 25 25 C 1.47419 * 108.70163 * 1.06367 * 13 12 11 26 26 H 0.97006 * 119.99705 * 0.02562 * 1 2 3 27 27 H 0.96701 * 114.00466 * 292.32713 * 10 9 7 28 28 H 1.09004 * 110.72446 * 88.01940 * 11 9 7 29 29 H 1.09004 * 110.87177 * 324.81699 * 11 9 7 30 30 H 1.08994 * 109.88743 * 141.60851 * 12 11 9 31 31 H 1.09001 * 109.88571 * 262.77732 * 12 11 9 32 32 H 1.07996 * 126.58371 * 359.97041 * 18 17 14 33 33 H 1.08007 * 126.57824 * 179.97438 * 19 18 17 34 34 H 1.08995 * 109.47324 * 180.02562 * 21 20 19 35 35 H 1.09000 * 110.36270 * 217.02771 * 25 13 12 36 36 H 1.09006 * 110.36571 * 94.70714 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5535 2.0136 -1.3986 5 1 1.4196 2.6683 0.6426 6 1 3.5173 1.4571 0.7560 7 6 2.0045 -1.1941 -0.0005 8 1 1.4695 -2.1265 0.1044 9 6 3.5042 -1.1983 -0.1476 10 8 3.9405 -0.0994 -0.9501 11 6 4.0019 -2.5463 -0.7327 12 6 5.4431 -2.6475 -0.1904 13 7 5.5223 -1.7897 1.0011 14 16 6.8741 -1.5447 1.9258 15 8 6.4149 -1.1444 3.2096 16 8 7.7128 -2.6727 1.7172 17 6 7.7258 -0.1593 1.2477 18 6 7.5394 1.1264 1.5965 19 6 8.4238 1.8971 0.8073 20 6 9.0982 1.0363 0.0240 21 6 10.1538 1.4053 -0.9862 22 9 9.6011 2.2576 -1.9482 23 9 11.2109 2.0549 -0.3399 24 8 8.6752 -0.2084 0.2991 25 6 4.1988 -1.1849 1.2369 26 1 -0.4850 0.8401 -0.0004 27 1 3.6753 -0.1602 -1.8780 28 1 4.0011 -2.5176 -1.8224 29 1 3.3942 -3.3752 -0.3698 30 1 5.6658 -3.6796 0.0803 31 1 6.1486 -2.2997 -0.9450 32 1 6.8465 1.4986 2.3365 33 1 8.5364 2.9711 0.8292 34 1 10.5241 0.5021 -1.4712 35 1 4.3080 -0.1618 1.5967 36 1 3.6313 -1.7808 1.9518 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601452581.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:42 Heat of formation + Delta-G solvation = -187.231259 kcal Electronic energy + Delta-G solvation = -28142.837183 eV Core-core repulsion = 23585.517415 eV Total energy + Delta-G solvation = -4557.319768 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.067 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.55849 -47.55762 -42.99103 -38.62169 -37.31850 -35.94787 -34.92868 -33.59254 -32.45711 -31.53579 -29.93373 -28.62929 -26.67747 -24.89245 -22.66140 -22.15912 -21.62690 -20.03975 -19.51984 -18.55756 -17.96163 -17.84326 -17.63106 -17.56760 -17.23903 -16.25392 -15.74129 -15.17216 -15.00034 -14.61135 -14.41458 -14.26914 -13.97748 -13.90322 -13.84274 -13.47426 -13.33595 -13.22253 -12.70911 -12.47114 -12.23422 -12.19756 -12.07876 -11.87678 -11.78790 -11.70507 -11.31797 -10.93838 -10.69313 -10.45810 -10.43920 -10.30107 -9.57098 -9.33048 -8.79203 -8.70088 -8.56998 -6.28561 -4.40933 0.11926 0.70512 1.90289 2.01798 2.94279 3.36934 3.43767 3.45502 3.58900 3.59799 3.76835 4.08494 4.39830 4.40761 4.43049 4.48893 4.85931 5.00251 5.03139 5.17920 5.21508 5.32160 5.49199 5.63129 5.79756 5.85580 6.00706 6.22556 6.31185 6.43728 6.51176 6.56627 6.61939 6.87970 7.36751 8.03789 8.52713 8.73596 9.32687 10.80026 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.013101 B = 0.004723 C = 0.004014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.740903 B = 5926.956249 C = 6973.519680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.075 3.925 3 Si 0.947 3.053 4 H -0.292 1.292 5 H -0.324 1.324 6 H -0.272 1.272 7 C -0.552 4.552 8 H 0.084 0.916 9 C 0.221 3.779 10 O -0.561 6.561 11 C -0.144 4.144 12 C 0.124 3.876 13 N -0.995 5.995 14 S 2.724 3.276 15 O -0.929 6.929 16 O -0.942 6.942 17 C -0.545 4.545 18 C -0.089 4.089 19 C -0.166 4.166 20 C -0.069 4.069 21 C 0.360 3.640 22 F -0.180 7.180 23 F -0.183 7.183 24 O -0.104 6.104 25 C 0.124 3.876 26 H 0.268 0.732 27 H 0.372 0.628 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.174 0.826 33 H 0.166 0.834 34 H 0.138 0.862 35 H 0.074 0.926 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.277 0.633 -2.023 17.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.131 4.131 3 Si 0.783 3.217 4 H -0.219 1.219 5 H -0.256 1.256 6 H -0.198 1.198 7 C -0.589 4.589 8 H 0.102 0.898 9 C 0.179 3.821 10 O -0.369 6.369 11 C -0.183 4.183 12 C -0.001 4.001 13 N -0.837 5.837 14 S 2.806 3.194 15 O -0.920 6.920 16 O -0.932 6.932 17 C -0.673 4.673 18 C -0.110 4.110 19 C -0.186 4.186 20 C -0.123 4.123 21 C 0.306 3.694 22 F -0.161 7.161 23 F -0.164 7.164 24 O 0.002 5.998 25 C 0.000 4.000 26 H 0.077 0.923 27 H 0.220 0.780 28 H 0.093 0.907 29 H 0.101 0.899 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.191 0.809 33 H 0.184 0.816 34 H 0.155 0.845 35 H 0.092 0.908 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 17.893 0.251 -0.855 17.915 hybrid contribution 0.121 1.811 -0.888 2.020 sum 18.014 2.062 -1.742 18.215 Atomic orbital electron populations 1.69959 1.06827 1.27937 1.47043 1.25155 0.94894 1.00499 0.92510 0.85714 0.77793 0.80240 0.77971 1.21945 1.25558 1.19799 1.21187 0.88256 0.95491 1.54001 0.89770 1.20249 0.93387 0.81946 0.86479 1.86112 1.80033 1.46741 1.23986 1.23279 0.93215 1.01241 1.00560 1.21798 0.99553 0.93160 0.85606 1.58594 1.23069 1.58333 1.43676 1.01718 0.71970 0.72504 0.73201 1.93653 1.80368 1.83635 1.34309 1.93573 1.66918 1.46777 1.85931 1.36620 1.05959 1.20146 1.04551 1.22052 0.98557 0.91105 0.99253 1.21920 0.97756 1.01498 0.97390 1.23190 1.02087 0.84671 1.02361 1.19115 0.79401 0.89655 0.81213 1.93094 1.86273 1.73607 1.63118 1.93076 1.56648 1.83867 1.82772 1.84095 1.42881 1.27837 1.45008 1.22916 0.79277 0.97845 0.99919 0.92281 0.77966 0.90670 0.89892 0.91326 0.92197 0.80851 0.81622 0.84474 0.90782 0.89084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.06 13.96 55.43 0.77 -24.29 16 2 C 0.08 1.99 5.46 -17.82 -0.10 1.89 16 3 Si 0.95 22.39 24.91 -169.99 -4.23 18.16 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.32 -7.95 7.11 56.52 0.40 -7.55 16 6 H -0.27 -6.26 5.40 56.52 0.31 -5.95 16 7 C -0.55 -13.61 8.89 -34.44 -0.31 -13.92 16 8 H 0.08 2.25 8.00 -52.48 -0.42 1.83 16 9 C 0.22 4.45 0.70 -89.63 -0.06 4.39 16 10 O -0.56 -11.13 8.51 -35.23 -0.30 -11.43 16 11 C -0.14 -2.34 6.11 -24.90 -0.15 -2.50 16 12 C 0.12 1.86 6.99 -3.06 -0.02 1.84 16 13 N -1.00 -16.72 3.70 -111.43 -0.41 -17.13 16 14 S 2.72 44.32 6.09 -107.50 -0.65 43.66 16 15 O -0.93 -16.57 17.42 -57.17 -1.00 -17.56 16 16 O -0.94 -16.40 17.60 -57.23 -1.01 -17.41 16 17 C -0.54 -8.43 7.36 29.42 0.22 -8.21 16 18 C -0.09 -1.28 10.63 -39.70 -0.42 -1.71 16 19 C -0.17 -2.14 10.81 -39.70 -0.43 -2.57 16 20 C -0.07 -0.87 6.76 -35.63 -0.24 -1.11 16 21 C 0.36 3.38 5.77 36.00 0.21 3.59 16 22 F -0.18 -1.93 17.32 2.25 0.04 -1.89 16 23 F -0.18 -1.82 17.32 2.25 0.04 -1.78 16 24 O -0.10 -1.53 10.65 5.70 0.06 -1.47 16 25 C 0.12 2.40 5.95 -2.54 -0.02 2.38 16 26 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 27 H 0.37 6.36 8.98 45.56 0.41 6.77 16 28 H 0.07 1.09 8.12 -51.93 -0.42 0.67 16 29 H 0.08 1.35 7.99 -51.93 -0.41 0.93 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.17 2.23 8.06 -52.49 -0.42 1.81 16 33 H 0.17 1.70 8.06 -52.48 -0.42 1.28 16 34 H 0.14 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 1.48 6.59 -51.93 -0.34 1.13 16 36 H 0.09 1.73 8.03 -51.93 -0.42 1.31 16 LS Contribution 329.09 15.07 4.96 4.96 Total: -1.00 -32.10 329.09 -6.01 -38.10 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -2.95 Total: 4.00 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: -1.32 Total: -15.93 kcal Atomic # 7 Polarization: -41.78 SS G_CDS: 0.36 Total: -41.42 kcal Atomic # 8 Polarization: -45.62 SS G_CDS: -2.24 Total: -47.87 kcal Atomic # 9 Polarization: -3.75 SS G_CDS: 0.08 Total: -3.67 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -4.23 Total: 18.16 kcal Atomic # 16 Polarization: 44.32 SS G_CDS: -0.65 Total: 43.66 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.10 -6.01 -38.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601452581.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.130 kcal (2) G-P(sol) polarization free energy of solvation -32.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds