Wall clock time and date at job start Tue Mar 31 2020 20:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00170 * 2 1 4 4 H 1.48504 * 109.47183 * 267.31687 * 3 2 1 5 5 H 1.48494 * 109.47367 * 27.32290 * 3 2 1 6 6 H 1.48503 * 109.47092 * 147.32092 * 3 2 1 7 7 C 1.37877 * 119.99616 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99998 * 353.53234 * 7 2 1 9 9 C 1.50699 * 120.00117 * 173.53087 * 7 2 1 10 10 O 1.42899 * 110.88570 * 328.70748 * 9 7 2 11 11 C 1.55151 * 111.00704 * 204.82993 * 9 7 2 12 12 C 1.54321 * 102.94577 * 206.38603 * 11 9 7 13 13 N 1.47031 * 107.26722 * 22.18657 * 12 11 9 14 14 S 1.65598 * 125.64700 * 181.01302 * 13 12 11 15 15 O 1.42100 * 106.40454 * 203.56828 * 14 13 12 16 16 O 1.42103 * 106.40197 * 336.49068 * 14 13 12 17 17 C 1.76202 * 107.21838 * 90.02673 * 14 13 12 18 18 C 1.34518 * 125.78542 * 89.99624 * 17 14 13 19 19 C 1.41383 * 106.83570 * 180.02562 * 18 17 14 20 20 C 1.34510 * 106.84740 * 359.97438 * 19 18 17 21 21 C 1.50696 * 125.79515 * 180.02562 * 20 19 18 22 22 F 1.39901 * 109.47261 * 300.00817 * 21 20 19 23 23 F 1.39900 * 109.46737 * 60.00431 * 21 20 19 24 24 O 1.34300 * 125.79181 * 269.69713 * 17 14 13 25 25 C 1.47419 * 108.70163 * 1.06367 * 13 12 11 26 26 H 0.97006 * 119.99705 * 0.02562 * 1 2 3 27 27 H 0.96701 * 114.00466 * 292.32713 * 10 9 7 28 28 H 1.09004 * 110.72446 * 88.01940 * 11 9 7 29 29 H 1.09004 * 110.87177 * 324.81699 * 11 9 7 30 30 H 1.08994 * 109.88743 * 141.60851 * 12 11 9 31 31 H 1.09001 * 109.88571 * 262.77732 * 12 11 9 32 32 H 1.07996 * 126.58371 * 359.97041 * 18 17 14 33 33 H 1.08007 * 126.57824 * 179.97438 * 19 18 17 34 34 H 1.08995 * 109.47324 * 180.02562 * 21 20 19 35 35 H 1.09000 * 110.36270 * 217.02771 * 25 13 12 36 36 H 1.09006 * 110.36571 * 94.70714 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5535 2.0136 -1.3986 5 1 1.4196 2.6683 0.6426 6 1 3.5173 1.4571 0.7560 7 6 2.0045 -1.1941 -0.0005 8 1 1.4695 -2.1265 0.1044 9 6 3.5042 -1.1983 -0.1476 10 8 3.9405 -0.0994 -0.9501 11 6 4.0019 -2.5463 -0.7327 12 6 5.4431 -2.6475 -0.1904 13 7 5.5223 -1.7897 1.0011 14 16 6.8741 -1.5447 1.9258 15 8 6.4149 -1.1444 3.2096 16 8 7.7128 -2.6727 1.7172 17 6 7.7258 -0.1593 1.2477 18 6 7.5394 1.1264 1.5965 19 6 8.4238 1.8971 0.8073 20 6 9.0982 1.0363 0.0240 21 6 10.1538 1.4053 -0.9862 22 9 9.6011 2.2576 -1.9482 23 9 11.2109 2.0549 -0.3399 24 8 8.6752 -0.2084 0.2991 25 6 4.1988 -1.1849 1.2369 26 1 -0.4850 0.8401 -0.0004 27 1 3.6753 -0.1602 -1.8780 28 1 4.0011 -2.5176 -1.8224 29 1 3.3942 -3.3752 -0.3698 30 1 5.6658 -3.6796 0.0803 31 1 6.1486 -2.2997 -0.9450 32 1 6.8465 1.4986 2.3365 33 1 8.5364 2.9711 0.8292 34 1 10.5241 0.5021 -1.4712 35 1 4.3080 -0.1618 1.5967 36 1 3.6313 -1.7808 1.9518 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601452581.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:41 Heat of formation + Delta-G solvation = -212.877065 kcal Electronic energy + Delta-G solvation = -28143.949268 eV Core-core repulsion = 23585.517415 eV Total energy + Delta-G solvation = -4558.431854 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.067 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.30866 -48.31222 -44.03170 -40.10041 -38.65460 -37.28878 -36.43385 -34.63250 -34.42828 -32.49773 -31.38307 -30.13479 -27.55780 -26.70428 -23.74534 -23.44601 -22.62719 -21.62575 -20.67108 -19.73176 -19.41112 -18.99035 -18.67670 -18.51957 -18.28331 -17.32664 -17.21635 -16.85145 -16.43761 -16.12559 -15.49060 -15.25899 -15.17166 -14.97735 -14.65961 -14.65789 -14.54624 -14.40286 -14.20450 -13.99443 -13.65560 -13.61814 -13.53679 -13.45677 -12.93934 -12.81418 -12.54141 -12.52586 -12.29247 -12.12474 -11.92544 -11.51412 -11.22038 -10.66448 -10.59717 -10.29836 -10.06375 -8.32539 -6.44963 -1.13555 -0.37415 0.87710 1.05052 1.47981 1.52493 1.70660 1.72654 2.34377 2.44064 2.65657 2.87810 2.98275 3.15405 3.43474 3.47402 3.53149 3.67749 3.85855 3.99935 4.13723 4.18625 4.30561 4.35133 4.52717 4.58339 4.84566 4.87636 5.02332 5.06720 5.21623 5.28368 5.31383 5.38326 5.57432 6.10928 6.64054 7.01518 7.34592 8.80078 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.013101 B = 0.004723 C = 0.004014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.740903 B = 5926.956249 C = 6973.519680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.028 3.972 3 Si 0.997 3.003 4 H -0.281 1.281 5 H -0.341 1.341 6 H -0.263 1.263 7 C -0.542 4.542 8 H 0.054 0.946 9 C 0.215 3.785 10 O -0.563 6.563 11 C -0.136 4.136 12 C 0.119 3.881 13 N -0.998 5.998 14 S 2.747 3.253 15 O -0.950 6.950 16 O -0.953 6.953 17 C -0.568 4.568 18 C -0.095 4.095 19 C -0.179 4.179 20 C -0.066 4.066 21 C 0.364 3.636 22 F -0.187 7.187 23 F -0.185 7.185 24 O -0.111 6.111 25 C 0.125 3.875 26 H 0.266 0.734 27 H 0.385 0.615 28 H 0.097 0.903 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.182 0.818 33 H 0.189 0.811 34 H 0.180 0.820 35 H 0.065 0.935 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.992 0.875 -3.153 20.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.172 4.172 3 Si 0.832 3.168 4 H -0.208 1.208 5 H -0.274 1.274 6 H -0.188 1.188 7 C -0.580 4.580 8 H 0.072 0.928 9 C 0.173 3.827 10 O -0.373 6.373 11 C -0.175 4.175 12 C -0.005 4.005 13 N -0.839 5.839 14 S 2.831 3.169 15 O -0.941 6.941 16 O -0.944 6.944 17 C -0.698 4.698 18 C -0.115 4.115 19 C -0.198 4.198 20 C -0.120 4.120 21 C 0.310 3.690 22 F -0.168 7.168 23 F -0.166 7.166 24 O -0.005 6.005 25 C 0.001 3.999 26 H 0.075 0.925 27 H 0.235 0.765 28 H 0.116 0.884 29 H 0.098 0.902 30 H 0.106 0.894 31 H 0.099 0.901 32 H 0.200 0.800 33 H 0.206 0.794 34 H 0.197 0.803 35 H 0.084 0.916 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 20.615 0.451 -2.001 20.717 hybrid contribution -0.651 1.713 -0.543 1.911 sum 19.964 2.164 -2.544 20.242 Atomic orbital electron populations 1.70077 1.08423 1.28367 1.50276 1.25813 0.95202 1.03361 0.92817 0.84876 0.76686 0.76864 0.78363 1.20805 1.27370 1.18833 1.21463 0.90935 0.93847 1.51803 0.92824 1.20134 0.90703 0.84242 0.87591 1.86054 1.79560 1.46654 1.24996 1.23179 0.93907 0.98485 1.01897 1.21993 0.98896 0.94144 0.85450 1.58491 1.22337 1.58626 1.44415 1.00750 0.71434 0.72167 0.72513 1.93623 1.80753 1.84013 1.35695 1.93553 1.66972 1.47765 1.86063 1.36191 1.07401 1.19978 1.06190 1.22384 0.98699 0.91164 0.99298 1.22297 0.97511 1.02802 0.97207 1.23907 1.01984 0.83891 1.02246 1.19521 0.78319 0.90778 0.80352 1.93084 1.86461 1.74054 1.63159 1.93074 1.56508 1.84093 1.82944 1.84071 1.42757 1.28811 1.44843 1.22608 0.80655 0.97580 0.99100 0.92535 0.76524 0.88437 0.90185 0.89387 0.90101 0.80019 0.79369 0.80292 0.91627 0.89546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.46 13.96 21.45 0.30 -54.16 16 2 C 0.03 1.52 5.46 84.65 0.46 1.98 16 3 Si 1.00 45.94 24.91 68.60 1.71 47.65 16 4 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 5 H -0.34 -16.52 7.11 99.48 0.71 -15.81 16 6 H -0.26 -11.55 5.40 99.48 0.54 -11.01 16 7 C -0.54 -26.92 8.89 25.60 0.23 -26.69 16 8 H 0.05 2.94 8.00 -2.91 -0.02 2.92 16 9 C 0.21 8.37 0.70 -10.15 -0.01 8.36 16 10 O -0.56 -21.00 8.51 -148.98 -1.27 -22.27 16 11 C -0.14 -4.11 6.11 31.78 0.19 -3.92 16 12 C 0.12 3.23 6.99 86.73 0.61 3.83 16 13 N -1.00 -31.62 3.70 -506.44 -1.87 -33.49 16 14 S 2.75 85.16 6.09 -56.49 -0.34 84.81 16 15 O -0.95 -33.12 17.42 -128.00 -2.23 -35.35 16 16 O -0.95 -31.41 17.60 -127.95 -2.25 -33.66 16 17 C -0.57 -16.45 7.36 66.97 0.49 -15.96 16 18 C -0.09 -2.55 10.63 22.19 0.24 -2.32 16 19 C -0.18 -4.16 10.81 22.19 0.24 -3.92 16 20 C -0.07 -1.47 6.76 24.83 0.17 -1.30 16 21 C 0.36 5.55 5.77 71.23 0.41 5.96 16 22 F -0.19 -3.40 17.32 44.97 0.78 -2.63 16 23 F -0.19 -3.13 17.32 44.97 0.78 -2.35 16 24 O -0.11 -2.94 10.65 -2.53 -0.03 -2.97 16 25 C 0.13 4.71 5.95 86.85 0.52 5.23 16 26 H 0.27 14.79 8.31 -92.70 -0.77 14.02 16 27 H 0.38 12.10 8.98 -74.06 -0.67 11.43 16 28 H 0.10 2.52 8.12 -2.38 -0.02 2.50 16 29 H 0.08 2.48 7.99 -2.38 -0.02 2.46 16 30 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.18 4.41 8.06 -2.91 -0.02 4.39 16 33 H 0.19 3.33 8.06 -2.91 -0.02 3.31 16 34 H 0.18 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.07 2.55 6.59 -2.39 -0.02 2.54 16 36 H 0.09 3.27 8.03 -2.38 -0.02 3.25 16 Total: -1.00 -69.02 329.09 -0.57 -69.59 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: 0.31 Total: 13.56 kcal Atomic # 6 Polarization: -32.30 SS G_CDS: 3.55 Total: -28.75 kcal Atomic # 7 Polarization: -86.07 SS G_CDS: -1.57 Total: -87.65 kcal Atomic # 8 Polarization: -88.47 SS G_CDS: -5.78 Total: -94.24 kcal Atomic # 9 Polarization: -6.53 SS G_CDS: 1.56 Total: -4.97 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 1.71 Total: 47.65 kcal Atomic # 16 Polarization: 85.16 SS G_CDS: -0.34 Total: 84.81 kcal Total: -69.02 -0.57 -69.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601452581.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.291 kcal (2) G-P(sol) polarization free energy of solvation -69.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds