Wall clock time and date at job start Tue Mar 31 2020 20:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86803 * 119.99911 * 2 1 4 4 H 1.48495 * 109.46848 * 240.00135 * 3 2 1 5 5 H 1.48500 * 109.47124 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46980 * 120.00185 * 3 2 1 7 7 C 1.39946 * 119.99722 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99660 * 196.13654 * 7 2 1 9 9 C 1.41386 * 120.00322 * 16.14173 * 7 2 1 10 10 C 1.40730 * 120.24666 * 24.39714 * 9 7 2 11 11 C 1.37603 * 119.74957 * 180.02562 * 10 9 7 12 12 C 1.38661 * 120.24411 * 359.72630 * 11 10 9 13 13 C 1.38617 * 120.50073 * 0.55281 * 12 11 10 14 14 S 1.76201 * 119.87291 * 179.72054 * 13 12 11 15 15 O 1.42109 * 106.39729 * 156.18921 * 14 13 12 16 16 O 1.42094 * 106.40370 * 23.26997 * 14 13 12 17 17 N 1.65599 * 107.21736 * 269.72339 * 14 13 12 18 18 C 1.40117 * 119.99608 * 62.89755 * 17 14 13 19 19 C 1.38688 * 120.06453 * 35.59141 * 18 17 14 20 20 C 1.38245 * 120.00190 * 179.74507 * 19 18 17 21 21 C 1.38443 * 120.13302 * 0.55312 * 20 19 18 22 22 F 1.35095 * 119.93317 * 179.71992 * 21 20 19 23 23 C 1.38451 * 120.12930 * 359.70153 * 21 20 19 24 24 C 1.38514 * 119.99627 * 0.02562 * 23 21 20 25 25 O 1.36011 * 120.06838 * 180.02562 * 24 23 21 26 26 C 1.37637 * 120.24994 * 359.44836 * 13 12 11 27 27 H 0.96998 * 120.00335 * 359.97438 * 1 2 3 28 28 H 1.08001 * 120.12754 * 0.02562 * 10 9 7 29 29 H 1.07991 * 119.87772 * 180.02562 * 11 10 9 30 30 H 1.07996 * 119.74647 * 180.29401 * 12 11 10 31 31 H 0.97001 * 120.00464 * 242.89029 * 17 14 13 32 32 H 1.08001 * 120.00152 * 0.02880 * 19 18 17 33 33 H 1.07999 * 119.93417 * 180.25173 * 20 19 18 34 34 H 1.08002 * 120.00223 * 180.02562 * 23 21 20 35 35 H 0.96703 * 113.99867 * 269.97628 * 25 24 23 36 36 H 1.07997 * 120.13417 * 180.25367 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0959 1.6964 -1.2125 5 1 1.2772 2.7465 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0079 -1.2120 0.0005 8 1 3.0560 -1.2303 0.2605 9 6 1.3428 -2.4125 -0.3393 10 6 0.1903 -2.3804 -1.1463 11 6 -0.4493 -3.5548 -1.4704 12 6 0.0411 -4.7673 -1.0096 13 6 1.1721 -4.8104 -0.2094 14 16 1.7767 -6.3596 0.3730 15 8 3.1578 -6.1726 0.6505 16 8 1.2916 -7.3444 -0.5292 17 7 1.0434 -6.6563 1.8278 18 6 -0.3478 -6.8100 1.8926 19 6 -1.0270 -7.4332 0.8564 20 6 -2.3990 -7.5889 0.9241 21 6 -3.0991 -7.1135 2.0198 22 9 -4.4405 -7.2628 2.0792 23 6 -2.4273 -6.4859 3.0549 24 6 -1.0520 -6.3320 2.9953 25 8 -0.3904 -5.7161 4.0116 26 6 1.8280 -3.6481 0.1273 27 1 -0.4850 0.8400 0.0004 28 1 -0.1908 -1.4375 -1.5099 29 1 -1.3336 -3.5326 -2.0898 30 1 -0.4645 -5.6846 -1.2728 31 1 1.5770 -6.7238 2.6351 32 1 -0.4835 -7.8010 -0.0014 33 1 -2.9263 -8.0779 0.1184 34 1 -2.9755 -6.1162 3.9089 35 1 -0.3035 -4.7593 3.9015 36 1 2.7114 -3.6842 0.7475 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619463398.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:05 Heat of formation + Delta-G solvation = -115.371041 kcal Electronic energy + Delta-G solvation = -26642.534453 eV Core-core repulsion = 22519.100002 eV Total energy + Delta-G solvation = -4123.434451 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.062 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.89369 -39.97220 -37.75662 -37.10901 -36.48482 -35.58591 -34.79909 -33.94465 -30.36027 -30.16350 -29.91145 -28.38292 -25.58979 -23.28565 -22.47652 -22.03678 -21.09979 -19.36943 -18.83899 -18.19905 -17.84402 -17.23808 -16.60458 -16.34624 -15.99686 -15.57114 -15.31813 -15.08042 -14.77177 -14.66443 -14.02430 -13.94959 -13.61180 -13.47833 -13.23937 -12.67422 -12.51706 -12.12563 -11.96832 -11.84910 -11.82177 -11.57229 -11.44077 -11.34555 -11.12549 -11.04048 -10.96940 -10.70166 -10.44076 -9.86568 -9.64370 -9.44463 -9.00696 -8.21083 -8.09390 -7.80682 -7.00032 -4.63561 0.61804 1.03697 1.13230 2.04182 2.54755 2.94615 2.96397 3.01699 3.21364 3.37104 3.76026 3.89257 4.01475 4.32344 4.40651 4.68564 4.76035 4.87674 5.00949 5.30240 5.34311 5.66872 5.90111 5.94422 5.97000 6.06064 6.13653 6.28838 6.54932 6.63712 6.66657 6.72714 6.93498 6.99112 7.10269 7.25870 7.53872 7.62706 7.71108 7.84482 8.30649 8.57738 8.61582 9.94454 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.012452 B = 0.004176 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.179556 B = 6703.512728 C = 7555.392254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.075 3.925 3 Si 0.913 3.087 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.459 4.459 8 H 0.083 0.917 9 C 0.092 3.908 10 C -0.114 4.114 11 C -0.120 4.120 12 C -0.143 4.143 13 C -0.631 4.631 14 S 2.681 3.319 15 O -0.960 6.960 16 O -0.965 6.965 17 N -1.052 6.052 18 C 0.139 3.861 19 C -0.128 4.128 20 C -0.130 4.130 21 C 0.093 3.907 22 F -0.139 7.139 23 C -0.160 4.160 24 C 0.117 3.883 25 O -0.492 6.492 26 C -0.126 4.126 27 H 0.285 0.715 28 H 0.128 0.872 29 H 0.099 0.901 30 H 0.107 0.893 31 H 0.427 0.573 32 H 0.178 0.822 33 H 0.144 0.856 34 H 0.143 0.857 35 H 0.399 0.601 36 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.426 -8.001 4.165 10.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.143 4.143 3 Si 0.737 3.263 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.488 4.488 8 H 0.101 0.899 9 C 0.088 3.912 10 C -0.134 4.134 11 C -0.140 4.140 12 C -0.164 4.164 13 C -0.724 4.724 14 S 2.780 3.220 15 O -0.950 6.950 16 O -0.955 6.955 17 N -0.799 5.799 18 C 0.041 3.959 19 C -0.149 4.149 20 C -0.150 4.150 21 C 0.073 3.927 22 F -0.118 7.118 23 C -0.180 4.180 24 C 0.068 3.932 25 O -0.303 6.303 26 C -0.148 4.148 27 H 0.096 0.904 28 H 0.146 0.854 29 H 0.118 0.882 30 H 0.125 0.875 31 H 0.264 0.736 32 H 0.195 0.805 33 H 0.161 0.839 34 H 0.161 0.839 35 H 0.257 0.743 36 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -4.011 -8.973 3.872 10.564 hybrid contribution -0.191 2.035 0.361 2.076 sum -4.202 -6.938 4.233 9.150 Atomic orbital electron populations 1.69745 1.07635 1.29819 1.34814 1.25940 0.94822 1.01595 0.91980 0.86269 0.80094 0.79669 0.80245 1.18640 1.20190 1.18779 1.19607 0.97784 0.90747 1.40682 0.89896 1.17668 0.91921 0.91925 0.89692 1.21733 0.97241 0.97257 0.97126 1.20827 0.99302 0.93076 1.00782 1.20115 0.96364 0.97512 1.02423 1.29513 1.09958 1.17213 1.15706 1.02072 0.72837 0.75144 0.71973 1.93565 1.30309 1.87270 1.83901 1.93427 1.80846 1.58921 1.62352 1.53505 1.12362 1.85120 1.28901 1.17782 0.83010 0.99458 0.95661 1.21887 0.94727 0.97923 1.00364 1.21018 0.94024 1.01949 0.97973 1.17422 0.77263 1.01868 0.96145 1.91494 1.29763 1.93948 1.96593 1.21174 0.93693 1.03310 0.99780 1.17845 0.88888 0.97949 0.88521 1.84753 1.76908 1.26266 1.42336 1.20770 1.00295 0.91584 1.02110 0.90431 0.85428 0.88240 0.87455 0.73616 0.80489 0.83861 0.83879 0.74347 0.86987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -18.82 10.85 55.55 0.60 -18.21 16 2 C 0.07 1.73 5.18 -17.34 -0.09 1.64 16 3 Si 0.91 17.40 29.59 -169.99 -5.03 12.37 16 4 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 5 H -0.28 -5.15 7.11 56.52 0.40 -4.74 16 6 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 7 C -0.46 -11.25 9.06 -37.75 -0.34 -11.60 16 8 H 0.08 1.96 7.90 -52.49 -0.41 1.54 16 9 C 0.09 2.25 5.58 -106.83 -0.60 1.65 16 10 C -0.11 -2.70 8.70 -38.87 -0.34 -3.04 16 11 C -0.12 -2.56 10.02 -39.66 -0.40 -2.96 16 12 C -0.14 -2.90 9.53 -39.29 -0.37 -3.27 16 13 C -0.63 -12.89 5.86 -39.66 -0.23 -13.13 16 14 S 2.68 46.94 5.55 -107.50 -0.60 46.34 16 15 O -0.96 -18.94 17.27 -57.17 -0.99 -19.93 16 16 O -0.97 -17.55 14.08 -57.17 -0.80 -18.35 16 17 N -1.05 -15.06 5.64 32.53 0.18 -14.87 16 18 C 0.14 1.99 6.32 -83.51 -0.53 1.46 16 19 C -0.13 -1.79 8.86 -39.41 -0.35 -2.14 16 20 C -0.13 -1.63 10.02 -39.50 -0.40 -2.02 16 21 C 0.09 1.20 7.29 -39.43 -0.29 0.91 16 22 F -0.14 -1.79 17.26 2.25 0.04 -1.75 16 23 C -0.16 -2.00 9.96 -39.40 -0.39 -2.39 16 24 C 0.12 1.56 6.72 -39.09 -0.26 1.30 16 25 O -0.49 -5.92 13.08 -19.78 -0.26 -6.18 16 26 C -0.13 -2.85 9.26 -38.87 -0.36 -3.21 16 27 H 0.28 6.15 8.30 -40.82 -0.34 5.81 16 28 H 0.13 3.10 6.09 -52.49 -0.32 2.78 16 29 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 30 H 0.11 1.94 7.20 -52.49 -0.38 1.56 16 31 H 0.43 5.20 8.72 -34.47 -0.30 4.90 16 32 H 0.18 2.58 5.09 -52.49 -0.27 2.31 16 33 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 34 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 35 H 0.40 3.72 9.06 45.56 0.41 4.13 16 36 H 0.11 2.43 7.60 -52.49 -0.40 2.03 16 LS Contribution 331.15 15.07 4.99 4.99 Total: -1.00 -28.83 331.15 -8.88 -37.71 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -2.07 Total: 14.70 kcal Atomic # 6 Polarization: -31.86 SS G_CDS: -4.95 Total: -36.80 kcal Atomic # 7 Polarization: -33.87 SS G_CDS: 0.79 Total: -33.09 kcal Atomic # 8 Polarization: -42.42 SS G_CDS: -2.05 Total: -44.47 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 17.40 SS G_CDS: -5.03 Total: 12.37 kcal Atomic # 16 Polarization: 46.94 SS G_CDS: -0.60 Total: 46.34 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.83 -8.88 -37.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619463398.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.665 kcal (2) G-P(sol) polarization free energy of solvation -28.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds