Wall clock time and date at job start Tue Mar 31 2020 20:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86803 * 119.99911 * 2 1 4 4 H 1.48495 * 109.46848 * 240.00135 * 3 2 1 5 5 H 1.48500 * 109.47124 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46980 * 120.00185 * 3 2 1 7 7 C 1.39946 * 119.99722 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99660 * 196.13654 * 7 2 1 9 9 C 1.41386 * 120.00322 * 16.14173 * 7 2 1 10 10 C 1.40730 * 120.24666 * 24.39714 * 9 7 2 11 11 C 1.37603 * 119.74957 * 180.02562 * 10 9 7 12 12 C 1.38661 * 120.24411 * 359.72630 * 11 10 9 13 13 C 1.38617 * 120.50073 * 0.55281 * 12 11 10 14 14 S 1.76201 * 119.87291 * 179.72054 * 13 12 11 15 15 O 1.42109 * 106.39729 * 156.18921 * 14 13 12 16 16 O 1.42094 * 106.40370 * 23.26997 * 14 13 12 17 17 N 1.65599 * 107.21736 * 269.72339 * 14 13 12 18 18 C 1.40117 * 119.99608 * 62.89755 * 17 14 13 19 19 C 1.38688 * 120.06453 * 35.59141 * 18 17 14 20 20 C 1.38245 * 120.00190 * 179.74507 * 19 18 17 21 21 C 1.38443 * 120.13302 * 0.55312 * 20 19 18 22 22 F 1.35095 * 119.93317 * 179.71992 * 21 20 19 23 23 C 1.38451 * 120.12930 * 359.70153 * 21 20 19 24 24 C 1.38514 * 119.99627 * 0.02562 * 23 21 20 25 25 O 1.36011 * 120.06838 * 180.02562 * 24 23 21 26 26 C 1.37637 * 120.24994 * 359.44836 * 13 12 11 27 27 H 0.96998 * 120.00335 * 359.97438 * 1 2 3 28 28 H 1.08001 * 120.12754 * 0.02562 * 10 9 7 29 29 H 1.07991 * 119.87772 * 180.02562 * 11 10 9 30 30 H 1.07996 * 119.74647 * 180.29401 * 12 11 10 31 31 H 0.97001 * 120.00464 * 242.89029 * 17 14 13 32 32 H 1.08001 * 120.00152 * 0.02880 * 19 18 17 33 33 H 1.07999 * 119.93417 * 180.25173 * 20 19 18 34 34 H 1.08002 * 120.00223 * 180.02562 * 23 21 20 35 35 H 0.96703 * 113.99867 * 269.97628 * 25 24 23 36 36 H 1.07997 * 120.13417 * 180.25367 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0959 1.6964 -1.2125 5 1 1.2772 2.7465 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0079 -1.2120 0.0005 8 1 3.0560 -1.2303 0.2605 9 6 1.3428 -2.4125 -0.3393 10 6 0.1903 -2.3804 -1.1463 11 6 -0.4493 -3.5548 -1.4704 12 6 0.0411 -4.7673 -1.0096 13 6 1.1721 -4.8104 -0.2094 14 16 1.7767 -6.3596 0.3730 15 8 3.1578 -6.1726 0.6505 16 8 1.2916 -7.3444 -0.5292 17 7 1.0434 -6.6563 1.8278 18 6 -0.3478 -6.8100 1.8926 19 6 -1.0270 -7.4332 0.8564 20 6 -2.3990 -7.5889 0.9241 21 6 -3.0991 -7.1135 2.0198 22 9 -4.4405 -7.2628 2.0792 23 6 -2.4273 -6.4859 3.0549 24 6 -1.0520 -6.3320 2.9953 25 8 -0.3904 -5.7161 4.0116 26 6 1.8280 -3.6481 0.1273 27 1 -0.4850 0.8400 0.0004 28 1 -0.1908 -1.4375 -1.5099 29 1 -1.3336 -3.5326 -2.0898 30 1 -0.4645 -5.6846 -1.2728 31 1 1.5770 -6.7238 2.6351 32 1 -0.4835 -7.8010 -0.0014 33 1 -2.9263 -8.0779 0.1184 34 1 -2.9755 -6.1162 3.9089 35 1 -0.3035 -4.7593 3.9015 36 1 2.7114 -3.6842 0.7475 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619463398.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:04 Heat of formation + Delta-G solvation = -134.687195 kcal Electronic energy + Delta-G solvation = -26643.372064 eV Core-core repulsion = 22519.100002 eV Total energy + Delta-G solvation = -4124.272062 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.062 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.89709 -41.00460 -39.46365 -38.51331 -37.55381 -37.07137 -35.93609 -35.67386 -31.92382 -31.62106 -31.33121 -29.45460 -27.35175 -24.32452 -23.70605 -23.52623 -22.80816 -20.77368 -19.87035 -19.75578 -18.97055 -18.59267 -17.81152 -17.55673 -17.36157 -16.89329 -16.63259 -16.56887 -16.35422 -15.69506 -15.30814 -15.13769 -15.08693 -14.92309 -14.33216 -14.28789 -13.76645 -13.66452 -13.38080 -13.31495 -13.18628 -13.13181 -13.05266 -12.82461 -12.61446 -12.41499 -12.26261 -12.10809 -11.60055 -11.51460 -11.26680 -11.15317 -10.01169 -9.88916 -9.56161 -9.20982 -8.72126 -6.45823 -0.78098 0.03102 0.06897 0.36286 0.84494 1.38305 1.46795 1.49842 1.86835 2.17325 2.33502 2.48379 2.64912 2.96181 3.28831 3.42338 3.51690 3.76023 3.82323 4.00493 4.27016 4.33746 4.43724 4.68640 4.84605 4.90189 4.92137 4.96893 5.03192 5.09235 5.19108 5.23890 5.39229 5.54078 5.66291 5.88377 5.90255 5.94022 6.09638 6.52324 6.64828 6.79996 6.83822 8.24372 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.012452 B = 0.004176 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.179556 B = 6703.512728 C = 7555.392254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.040 3.960 3 Si 0.980 3.020 4 H -0.263 1.263 5 H -0.266 1.266 6 H -0.260 1.260 7 C -0.496 4.496 8 H 0.079 0.921 9 C 0.064 3.936 10 C -0.137 4.137 11 C -0.123 4.123 12 C -0.138 4.138 13 C -0.637 4.637 14 S 2.714 3.286 15 O -0.982 6.982 16 O -0.967 6.967 17 N -1.038 6.038 18 C 0.118 3.882 19 C -0.138 4.138 20 C -0.126 4.126 21 C 0.091 3.909 22 F -0.139 7.139 23 C -0.160 4.160 24 C 0.115 3.885 25 O -0.494 6.494 26 C -0.144 4.144 27 H 0.292 0.708 28 H 0.115 0.885 29 H 0.126 0.874 30 H 0.134 0.866 31 H 0.438 0.562 32 H 0.174 0.826 33 H 0.168 0.832 34 H 0.161 0.839 35 H 0.411 0.589 36 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.294 -8.661 4.508 11.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.176 4.176 3 Si 0.801 3.199 4 H -0.187 1.187 5 H -0.190 1.190 6 H -0.184 1.184 7 C -0.526 4.526 8 H 0.097 0.903 9 C 0.061 3.939 10 C -0.156 4.156 11 C -0.142 4.142 12 C -0.159 4.159 13 C -0.727 4.727 14 S 2.809 3.191 15 O -0.972 6.972 16 O -0.957 6.957 17 N -0.789 5.789 18 C 0.021 3.979 19 C -0.159 4.159 20 C -0.145 4.145 21 C 0.071 3.929 22 F -0.118 7.118 23 C -0.179 4.179 24 C 0.066 3.934 25 O -0.307 6.307 26 C -0.165 4.165 27 H 0.102 0.898 28 H 0.133 0.867 29 H 0.144 0.856 30 H 0.152 0.848 31 H 0.277 0.723 32 H 0.191 0.809 33 H 0.185 0.815 34 H 0.178 0.822 35 H 0.270 0.730 36 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -4.889 -9.609 4.207 11.573 hybrid contribution -0.029 2.071 0.300 2.092 sum -4.917 -7.538 4.507 10.066 Atomic orbital electron populations 1.69783 1.08770 1.30965 1.35173 1.26675 0.95527 1.04286 0.91079 0.85269 0.78846 0.75728 0.80078 1.18703 1.19050 1.18376 1.19837 0.97955 0.92018 1.42746 0.90316 1.17995 0.92709 0.92846 0.90395 1.21725 0.97898 0.97755 0.98255 1.21145 0.99854 0.92649 1.00593 1.20492 0.96028 0.98181 1.01201 1.30004 1.09415 1.18287 1.15030 1.01172 0.71964 0.73745 0.72193 1.93534 1.31952 1.87271 1.84468 1.93429 1.80851 1.58129 1.63285 1.53076 1.12817 1.84735 1.28316 1.17985 0.82652 1.00668 0.96585 1.21915 0.95402 0.98438 1.00185 1.21248 0.93507 1.01287 0.98477 1.17534 0.77316 1.01759 0.96337 1.91500 1.29734 1.93924 1.96595 1.21383 0.93468 1.02792 1.00304 1.17906 0.89203 0.97887 0.88391 1.84727 1.76779 1.27278 1.41927 1.20845 1.00836 0.91992 1.02808 0.89757 0.86732 0.85629 0.84794 0.72334 0.80939 0.81471 0.82151 0.73006 0.87038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -39.55 10.85 21.83 0.24 -39.31 16 2 C 0.04 1.88 5.18 85.26 0.44 2.32 16 3 Si 0.98 35.86 29.59 68.60 2.03 37.89 16 4 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 5 H -0.27 -9.18 7.11 99.48 0.71 -8.47 16 6 H -0.26 -9.25 7.11 99.48 0.71 -8.55 16 7 C -0.50 -25.17 9.06 23.46 0.21 -24.96 16 8 H 0.08 3.88 7.90 -2.91 -0.02 3.85 16 9 C 0.06 3.22 5.58 -21.29 -0.12 3.11 16 10 C -0.14 -6.61 8.70 22.73 0.20 -6.41 16 11 C -0.12 -5.16 10.02 22.22 0.22 -4.94 16 12 C -0.14 -5.42 9.53 22.46 0.21 -5.21 16 13 C -0.64 -25.70 5.86 22.22 0.13 -25.57 16 14 S 2.71 91.89 5.55 -56.49 -0.31 91.57 16 15 O -0.98 -38.12 17.27 -128.00 -2.21 -40.33 16 16 O -0.97 -33.37 14.08 -128.00 -1.80 -35.17 16 17 N -1.04 -28.26 5.64 -51.00 -0.29 -28.55 16 18 C 0.12 3.18 6.32 38.18 0.24 3.42 16 19 C -0.14 -3.57 8.86 22.38 0.20 -3.38 16 20 C -0.13 -2.82 10.02 22.32 0.22 -2.59 16 21 C 0.09 2.11 7.29 22.37 0.16 2.27 16 22 F -0.14 -3.23 17.26 44.97 0.78 -2.45 16 23 C -0.16 -3.64 9.96 22.39 0.22 -3.41 16 24 C 0.12 2.86 6.72 22.59 0.15 3.01 16 25 O -0.49 -11.08 13.08 -93.68 -1.23 -12.31 16 26 C -0.14 -6.62 9.26 22.73 0.21 -6.41 16 27 H 0.29 12.70 8.30 -92.71 -0.77 11.93 16 28 H 0.11 5.75 6.09 -2.91 -0.02 5.73 16 29 H 0.13 4.48 8.06 -2.92 -0.02 4.46 16 30 H 0.13 4.49 7.20 -2.91 -0.02 4.47 16 31 H 0.44 10.05 8.72 -96.74 -0.84 9.21 16 32 H 0.17 4.63 5.09 -2.91 -0.01 4.62 16 33 H 0.17 2.83 8.06 -2.91 -0.02 2.81 16 34 H 0.16 3.02 8.06 -2.91 -0.02 3.00 16 35 H 0.41 7.10 9.06 -74.06 -0.67 6.43 16 36 H 0.11 4.99 7.60 -2.91 -0.02 4.97 16 Total: -1.00 -61.41 331.15 -0.42 -61.82 By element: Atomic # 1 Polarization: 35.94 SS G_CDS: -0.33 Total: 35.60 kcal Atomic # 6 Polarization: -71.47 SS G_CDS: 2.71 Total: -68.76 kcal Atomic # 7 Polarization: -67.81 SS G_CDS: -0.05 Total: -67.86 kcal Atomic # 8 Polarization: -82.58 SS G_CDS: -5.24 Total: -87.82 kcal Atomic # 9 Polarization: -3.23 SS G_CDS: 0.78 Total: -2.45 kcal Atomic # 14 Polarization: 35.86 SS G_CDS: 2.03 Total: 37.89 kcal Atomic # 16 Polarization: 91.89 SS G_CDS: -0.31 Total: 91.57 kcal Total: -61.41 -0.42 -61.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619463398.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.865 kcal (2) G-P(sol) polarization free energy of solvation -61.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds