Wall clock time and date at job start Tue Mar 31 2020 20:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86799 * 120.00193 * 2 1 4 4 H 1.48490 * 109.47309 * 239.99747 * 3 2 1 5 5 H 1.48505 * 109.47016 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46843 * 119.99741 * 3 2 1 7 7 C 1.39949 * 119.99662 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99601 * 169.75025 * 7 2 1 9 9 C 1.41390 * 120.00307 * 349.75185 * 7 2 1 10 10 C 1.40734 * 120.24351 * 330.75168 * 9 7 2 11 11 C 1.37599 * 119.74892 * 180.02562 * 10 9 7 12 12 C 1.38660 * 120.24224 * 359.72568 * 11 10 9 13 13 C 1.38614 * 120.50226 * 0.55514 * 12 11 10 14 14 S 1.76197 * 119.87240 * 179.72097 * 13 12 11 15 15 O 1.42103 * 106.40018 * 156.18794 * 14 13 12 16 16 O 1.42097 * 106.40640 * 23.26692 * 14 13 12 17 17 N 1.65600 * 107.21907 * 269.72673 * 14 13 12 18 18 C 1.39844 * 119.99965 * 60.35082 * 17 14 13 19 19 C 1.38912 * 120.05063 * 35.54217 * 18 17 14 20 20 C 1.38150 * 120.04943 * 180.02562 * 19 18 17 21 21 C 1.38231 * 120.15314 * 359.96319 * 20 19 18 22 22 C 1.38743 * 120.10289 * 0.03928 * 21 20 19 23 23 O 1.35953 * 120.02068 * 179.97438 * 22 21 20 24 24 C 1.38743 * 119.94989 * 359.70019 * 22 21 20 25 25 F 1.35099 * 120.07668 * 180.27427 * 24 22 21 26 26 C 1.37639 * 120.24763 * 359.44524 * 13 12 11 27 27 H 0.97004 * 120.00237 * 0.02562 * 1 2 3 28 28 H 1.07997 * 120.12592 * 0.02562 * 10 9 7 29 29 H 1.07995 * 119.87683 * 180.02562 * 11 10 9 30 30 H 1.08004 * 119.74699 * 180.29613 * 12 11 10 31 31 H 0.96998 * 119.99702 * 240.63375 * 17 14 13 32 32 H 1.07996 * 119.97744 * 0.02562 * 19 18 17 33 33 H 1.07999 * 119.92146 * 179.97438 * 20 19 18 34 34 H 1.07996 * 119.94953 * 180.02562 * 21 20 19 35 35 H 0.96706 * 114.00115 * 90.00558 * 23 22 21 36 36 H 1.07995 * 120.12627 * 180.25052 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0960 1.6963 -1.2124 5 1 1.2772 2.7465 0.0006 6 1 3.0959 1.6963 1.2126 7 6 2.0079 -1.2120 0.0005 8 1 3.0749 -1.2196 -0.1659 9 6 1.3178 -2.4266 0.2189 10 6 0.1521 -2.4478 1.0071 11 6 -0.5111 -3.6356 1.2134 12 6 -0.0380 -4.8078 0.6434 13 6 1.1123 -4.7997 -0.1299 14 16 1.7028 -6.3002 -0.8402 15 8 2.4878 -5.9298 -1.9653 16 8 0.5834 -7.1712 -0.9263 17 7 2.7437 -6.9831 0.2518 18 6 2.2878 -7.3367 1.5257 19 6 0.9981 -7.8251 1.6922 20 6 0.5475 -8.1738 2.9507 21 6 1.3778 -8.0389 4.0476 22 6 2.6671 -7.5517 3.8886 23 8 3.4822 -7.4192 4.9686 24 6 3.1259 -7.2053 2.6258 25 9 4.3827 -6.7359 2.4673 26 6 1.7918 -3.6231 -0.3496 27 1 -0.4851 0.8401 -0.0004 28 1 -0.2206 -1.5352 1.4483 29 1 -1.4061 -3.6542 1.8175 30 1 -0.5676 -5.7348 0.8067 31 1 3.6707 -7.1342 0.0092 32 1 0.3471 -7.9322 0.8372 33 1 -0.4558 -8.5529 3.0778 34 1 1.0224 -8.3129 5.0298 35 1 4.0141 -8.2042 5.1586 36 1 2.6856 -3.6184 -0.9557 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619463460.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:49 Heat of formation + Delta-G solvation = -112.939408 kcal Electronic energy + Delta-G solvation = -26693.013748 eV Core-core repulsion = 22569.684741 eV Total energy + Delta-G solvation = -4123.329007 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.062 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.85273 -39.73543 -37.73469 -37.54944 -36.80131 -35.57888 -34.62813 -33.83476 -30.11891 -29.90883 -29.80635 -28.98046 -25.51502 -23.07467 -22.73971 -21.99377 -21.05452 -19.57070 -18.79185 -18.13624 -17.76977 -17.34386 -16.92004 -16.12978 -15.92343 -15.64005 -15.19559 -15.09076 -14.92724 -14.63559 -14.42159 -13.61270 -13.54638 -13.40704 -12.92275 -12.64040 -12.58125 -12.37010 -12.02753 -11.89586 -11.78887 -11.46673 -11.37038 -11.25441 -11.12113 -10.98921 -10.92315 -10.67744 -10.61220 -9.79645 -9.64382 -9.39184 -8.74297 -8.38281 -8.09979 -7.68937 -6.87541 -4.57251 0.59428 0.96360 1.12299 2.08761 2.60844 3.00546 3.03421 3.06182 3.16800 3.36183 3.80796 3.84551 3.99259 4.23774 4.41464 4.68016 4.77420 4.85161 4.96815 5.30727 5.37409 5.71065 5.76732 5.97222 5.99798 6.06521 6.08911 6.31404 6.54455 6.59889 6.71021 6.74858 6.91751 7.04243 7.16462 7.30328 7.41015 7.65923 7.78581 7.90901 8.37472 8.65442 8.69642 10.07836 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.012984 B = 0.004100 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.997353 B = 6826.856197 C = 7482.919344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.073 3.927 3 Si 0.916 3.084 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.462 4.462 8 H 0.081 0.919 9 C 0.091 3.909 10 C -0.104 4.104 11 C -0.124 4.124 12 C -0.135 4.135 13 C -0.634 4.634 14 S 2.681 3.319 15 O -0.957 6.957 16 O -0.963 6.963 17 N -1.055 6.055 18 C 0.156 3.844 19 C -0.151 4.151 20 C -0.082 4.082 21 C -0.138 4.138 22 C 0.093 3.907 23 O -0.486 6.486 24 C 0.050 3.950 25 F -0.129 7.129 26 C -0.120 4.120 27 H 0.284 0.716 28 H 0.128 0.872 29 H 0.101 0.899 30 H 0.108 0.892 31 H 0.425 0.575 32 H 0.174 0.826 33 H 0.141 0.859 34 H 0.139 0.861 35 H 0.390 0.610 36 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.453 -13.839 7.420 15.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.144 4.144 3 Si 0.740 3.260 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.491 4.491 8 H 0.099 0.901 9 C 0.088 3.912 10 C -0.124 4.124 11 C -0.143 4.143 12 C -0.157 4.157 13 C -0.727 4.727 14 S 2.780 3.220 15 O -0.948 6.948 16 O -0.953 6.953 17 N -0.801 5.801 18 C 0.058 3.942 19 C -0.172 4.172 20 C -0.100 4.100 21 C -0.157 4.157 22 C 0.047 3.953 23 O -0.295 6.295 24 C 0.026 3.974 25 F -0.107 7.107 26 C -0.141 4.141 27 H 0.095 0.905 28 H 0.146 0.854 29 H 0.119 0.881 30 H 0.126 0.874 31 H 0.261 0.739 32 H 0.191 0.809 33 H 0.159 0.841 34 H 0.157 0.843 35 H 0.246 0.754 36 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 1.723 -13.436 6.539 15.042 hybrid contribution 1.208 1.055 0.357 1.643 sum 2.932 -12.381 6.896 14.472 Atomic orbital electron populations 1.69718 1.07506 1.29609 1.36102 1.25910 0.94915 1.01465 0.92137 0.86227 0.79950 0.79704 0.80079 1.18840 1.20218 1.18772 1.19561 0.96042 0.90188 1.43349 0.90053 1.17679 0.92196 0.92046 0.89299 1.21745 0.96804 0.96727 0.97078 1.20837 0.99394 0.93346 1.00735 1.20141 0.96101 0.98069 1.01367 1.29458 1.08722 1.16046 1.18503 1.02105 0.72833 0.74540 0.72500 1.93569 1.70171 1.83997 1.47039 1.93441 1.51123 1.65426 1.85311 1.53594 1.26721 1.75553 1.24241 1.17295 0.94169 0.99217 0.83550 1.22011 0.94816 0.99227 1.01129 1.20945 0.99902 0.98230 0.90971 1.21324 0.92975 1.01199 1.00230 1.18216 0.91396 1.01250 0.84436 1.84908 1.57466 1.42374 1.44769 1.17919 0.81614 1.05080 0.92776 1.91478 1.36880 1.86181 1.96175 1.20808 1.00485 0.92119 1.00719 0.90547 0.85400 0.88119 0.87352 0.73877 0.80870 0.84107 0.84309 0.75426 0.86948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.14 10.85 55.55 0.60 -19.54 16 2 C 0.07 1.78 5.26 -17.34 -0.09 1.69 16 3 Si 0.92 18.37 29.57 -169.99 -5.03 13.34 16 4 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 5 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 6 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 7 C -0.46 -11.95 9.06 -37.74 -0.34 -12.29 16 8 H 0.08 2.02 7.87 -52.49 -0.41 1.60 16 9 C 0.09 2.37 5.55 -106.83 -0.59 1.78 16 10 C -0.10 -2.57 8.66 -38.87 -0.34 -2.91 16 11 C -0.12 -2.73 10.02 -39.66 -0.40 -3.13 16 12 C -0.14 -2.85 9.36 -39.29 -0.37 -3.22 16 13 C -0.63 -13.71 5.80 -39.66 -0.23 -13.94 16 14 S 2.68 49.12 5.52 -107.50 -0.59 48.53 16 15 O -0.96 -19.73 17.27 -57.17 -0.99 -20.72 16 16 O -0.96 -17.88 14.22 -57.17 -0.81 -18.69 16 17 N -1.06 -15.89 5.68 32.45 0.18 -15.71 16 18 C 0.16 2.30 6.25 -83.70 -0.52 1.78 16 19 C -0.15 -2.04 8.49 -39.36 -0.33 -2.37 16 20 C -0.08 -0.88 10.03 -39.62 -0.40 -1.28 16 21 C -0.14 -1.44 9.98 -39.40 -0.39 -1.84 16 22 C 0.09 1.16 6.71 -39.21 -0.26 0.90 16 23 O -0.49 -5.41 13.37 -19.59 -0.26 -5.67 16 24 C 0.05 0.72 7.32 -39.14 -0.29 0.44 16 25 F -0.13 -1.97 16.80 2.25 0.04 -1.93 16 26 C -0.12 -2.89 9.26 -38.87 -0.36 -3.25 16 27 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 28 H 0.13 3.23 6.24 -52.49 -0.33 2.90 16 29 H 0.10 1.92 8.06 -52.49 -0.42 1.50 16 30 H 0.11 1.98 6.93 -52.48 -0.36 1.62 16 31 H 0.43 5.38 8.79 -34.47 -0.30 5.08 16 32 H 0.17 2.46 5.12 -52.49 -0.27 2.19 16 33 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 34 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 35 H 0.39 2.21 9.06 45.56 0.41 2.62 16 36 H 0.11 2.61 7.60 -52.49 -0.40 2.21 16 LS Contribution 330.42 15.07 4.98 4.98 Total: -1.00 -31.68 330.42 -8.86 -40.54 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -2.06 Total: 12.52 kcal Atomic # 6 Polarization: -32.73 SS G_CDS: -4.91 Total: -37.65 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: 0.79 Total: -35.25 kcal Atomic # 8 Polarization: -43.02 SS G_CDS: -2.06 Total: -45.08 kcal Atomic # 9 Polarization: -1.97 SS G_CDS: 0.04 Total: -1.93 kcal Atomic # 14 Polarization: 18.37 SS G_CDS: -5.03 Total: 13.34 kcal Atomic # 16 Polarization: 49.12 SS G_CDS: -0.59 Total: 48.53 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.68 -8.86 -40.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619463460.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.402 kcal (2) G-P(sol) polarization free energy of solvation -31.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds