Wall clock time and date at job start Tue Mar 31 2020 20:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86799 * 120.00193 * 2 1 4 4 H 1.48490 * 109.47309 * 239.99747 * 3 2 1 5 5 H 1.48505 * 109.47016 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46843 * 119.99741 * 3 2 1 7 7 C 1.39949 * 119.99662 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99601 * 169.75025 * 7 2 1 9 9 C 1.41390 * 120.00307 * 349.75185 * 7 2 1 10 10 C 1.40734 * 120.24351 * 330.75168 * 9 7 2 11 11 C 1.37599 * 119.74892 * 180.02562 * 10 9 7 12 12 C 1.38660 * 120.24224 * 359.72568 * 11 10 9 13 13 C 1.38614 * 120.50226 * 0.55514 * 12 11 10 14 14 S 1.76197 * 119.87240 * 179.72097 * 13 12 11 15 15 O 1.42103 * 106.40018 * 156.18794 * 14 13 12 16 16 O 1.42097 * 106.40640 * 23.26692 * 14 13 12 17 17 N 1.65600 * 107.21907 * 269.72673 * 14 13 12 18 18 C 1.39844 * 119.99965 * 60.35082 * 17 14 13 19 19 C 1.38912 * 120.05063 * 35.54217 * 18 17 14 20 20 C 1.38150 * 120.04943 * 180.02562 * 19 18 17 21 21 C 1.38231 * 120.15314 * 359.96319 * 20 19 18 22 22 C 1.38743 * 120.10289 * 0.03928 * 21 20 19 23 23 O 1.35953 * 120.02068 * 179.97438 * 22 21 20 24 24 C 1.38743 * 119.94989 * 359.70019 * 22 21 20 25 25 F 1.35099 * 120.07668 * 180.27427 * 24 22 21 26 26 C 1.37639 * 120.24763 * 359.44524 * 13 12 11 27 27 H 0.97004 * 120.00237 * 0.02562 * 1 2 3 28 28 H 1.07997 * 120.12592 * 0.02562 * 10 9 7 29 29 H 1.07995 * 119.87683 * 180.02562 * 11 10 9 30 30 H 1.08004 * 119.74699 * 180.29613 * 12 11 10 31 31 H 0.96998 * 119.99702 * 240.63375 * 17 14 13 32 32 H 1.07996 * 119.97744 * 0.02562 * 19 18 17 33 33 H 1.07999 * 119.92146 * 179.97438 * 20 19 18 34 34 H 1.07996 * 119.94953 * 180.02562 * 21 20 19 35 35 H 0.96706 * 114.00115 * 90.00558 * 23 22 21 36 36 H 1.07995 * 120.12627 * 180.25052 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0960 1.6963 -1.2124 5 1 1.2772 2.7465 0.0006 6 1 3.0959 1.6963 1.2126 7 6 2.0079 -1.2120 0.0005 8 1 3.0749 -1.2196 -0.1659 9 6 1.3178 -2.4266 0.2189 10 6 0.1521 -2.4478 1.0071 11 6 -0.5111 -3.6356 1.2134 12 6 -0.0380 -4.8078 0.6434 13 6 1.1123 -4.7997 -0.1299 14 16 1.7028 -6.3002 -0.8402 15 8 2.4878 -5.9298 -1.9653 16 8 0.5834 -7.1712 -0.9263 17 7 2.7437 -6.9831 0.2518 18 6 2.2878 -7.3367 1.5257 19 6 0.9981 -7.8251 1.6922 20 6 0.5475 -8.1738 2.9507 21 6 1.3778 -8.0389 4.0476 22 6 2.6671 -7.5517 3.8886 23 8 3.4822 -7.4192 4.9686 24 6 3.1259 -7.2053 2.6258 25 9 4.3827 -6.7359 2.4673 26 6 1.7918 -3.6231 -0.3496 27 1 -0.4851 0.8401 -0.0004 28 1 -0.2206 -1.5352 1.4483 29 1 -1.4061 -3.6542 1.8175 30 1 -0.5676 -5.7348 0.8067 31 1 3.6707 -7.1342 0.0092 32 1 0.3471 -7.9322 0.8372 33 1 -0.4558 -8.5529 3.0778 34 1 1.0224 -8.3129 5.0298 35 1 4.0141 -8.2042 5.1586 36 1 2.6856 -3.6184 -0.9557 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619463460.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:48 Heat of formation + Delta-G solvation = -135.711527 kcal Electronic energy + Delta-G solvation = -26694.001221 eV Core-core repulsion = 22569.684741 eV Total energy + Delta-G solvation = -4124.316480 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.062 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.95250 -40.69241 -39.49851 -38.71118 -38.15403 -37.12880 -35.68619 -35.65724 -31.93801 -31.66437 -30.79671 -29.98932 -27.37268 -24.08283 -23.79107 -23.66961 -22.84567 -20.89921 -20.04863 -19.53811 -19.12033 -18.38128 -18.13577 -17.80572 -17.11708 -16.89008 -16.69089 -16.65530 -16.34877 -15.80710 -15.42072 -15.31504 -15.09596 -14.62639 -14.33318 -14.02919 -13.82280 -13.70835 -13.47714 -13.40145 -13.24471 -13.19324 -13.05024 -12.88056 -12.64857 -12.38145 -12.24612 -11.99314 -11.68505 -11.57339 -11.35827 -11.18382 -9.90344 -9.70365 -9.53795 -9.41760 -8.69441 -6.50099 -0.84583 0.02266 0.12254 0.32786 0.81740 1.35708 1.45198 1.47449 1.77961 2.17181 2.39568 2.46531 2.64178 2.93298 3.25779 3.33119 3.45811 3.76347 3.87223 4.03391 4.25923 4.37290 4.43195 4.80062 4.81757 4.86421 4.88082 4.99974 5.05343 5.15913 5.18510 5.37104 5.37807 5.49638 5.63330 5.83600 5.84706 5.92040 6.07965 6.49606 6.73263 6.78357 6.81719 8.28017 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.012984 B = 0.004100 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.997353 B = 6826.856197 C = 7482.919344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.034 3.966 3 Si 0.986 3.014 4 H -0.262 1.262 5 H -0.264 1.264 6 H -0.260 1.260 7 C -0.502 4.502 8 H 0.076 0.924 9 C 0.060 3.940 10 C -0.126 4.126 11 C -0.126 4.126 12 C -0.128 4.128 13 C -0.645 4.645 14 S 2.716 3.284 15 O -0.983 6.983 16 O -0.960 6.960 17 N -1.046 6.046 18 C 0.133 3.867 19 C -0.167 4.167 20 C -0.069 4.069 21 C -0.126 4.126 22 C 0.094 3.906 23 O -0.497 6.497 24 C 0.023 3.977 25 F -0.142 7.142 26 C -0.144 4.144 27 H 0.291 0.709 28 H 0.116 0.884 29 H 0.133 0.867 30 H 0.142 0.858 31 H 0.434 0.566 32 H 0.168 0.832 33 H 0.178 0.822 34 H 0.174 0.826 35 H 0.413 0.587 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.481 -15.365 9.099 17.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.180 4.180 3 Si 0.806 3.194 4 H -0.187 1.187 5 H -0.188 1.188 6 H -0.184 1.184 7 C -0.532 4.532 8 H 0.094 0.906 9 C 0.057 3.943 10 C -0.146 4.146 11 C -0.145 4.145 12 C -0.148 4.148 13 C -0.735 4.735 14 S 2.811 3.189 15 O -0.973 6.973 16 O -0.950 6.950 17 N -0.796 5.796 18 C 0.035 3.965 19 C -0.188 4.188 20 C -0.087 4.087 21 C -0.145 4.145 22 C 0.048 3.952 23 O -0.310 6.310 24 C -0.001 4.001 25 F -0.121 7.121 26 C -0.166 4.166 27 H 0.102 0.898 28 H 0.134 0.866 29 H 0.151 0.849 30 H 0.160 0.840 31 H 0.273 0.727 32 H 0.185 0.815 33 H 0.196 0.804 34 H 0.191 0.809 35 H 0.273 0.727 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.746 -14.961 8.237 17.095 hybrid contribution 1.482 1.278 -0.040 1.958 sum 2.229 -13.683 8.197 16.105 Atomic orbital electron populations 1.69767 1.08716 1.30822 1.36590 1.26720 0.95713 1.04385 0.91158 0.85191 0.78703 0.75491 0.79990 1.18683 1.18838 1.18391 1.19809 0.96156 0.91530 1.45713 0.90565 1.18038 0.93202 0.92895 0.90181 1.21754 0.97313 0.97524 0.97999 1.21213 1.00006 0.92643 1.00597 1.20600 0.95491 0.99021 0.99726 1.30029 1.08643 1.17155 1.17679 1.01162 0.72618 0.73267 0.71854 1.93532 1.70768 1.84309 1.48702 1.93445 1.51641 1.64458 1.85430 1.53163 1.26926 1.74933 1.24545 1.17524 0.95151 1.00789 0.83018 1.22121 0.94171 1.00177 1.02327 1.21387 1.01339 0.96317 0.89672 1.21715 0.91677 0.99336 1.01750 1.18444 0.92369 1.00563 0.83873 1.84845 1.57883 1.44336 1.43973 1.18257 0.81411 1.06605 0.93827 1.91435 1.37723 1.86620 1.96328 1.20875 1.01129 0.92905 1.01653 0.89848 0.86635 0.84889 0.84007 0.72744 0.81479 0.80433 0.80894 0.72676 0.87477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.84 10.85 21.83 0.24 -42.61 16 2 C 0.03 1.72 5.26 85.26 0.45 2.17 16 3 Si 0.99 38.30 29.57 68.60 2.03 40.33 16 4 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 5 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 6 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 7 C -0.50 -27.27 9.06 23.46 0.21 -27.06 16 8 H 0.08 4.01 7.87 -2.91 -0.02 3.99 16 9 C 0.06 3.24 5.55 -21.29 -0.12 3.13 16 10 C -0.13 -6.41 8.66 22.73 0.20 -6.21 16 11 C -0.13 -5.44 10.02 22.22 0.22 -5.22 16 12 C -0.13 -5.20 9.36 22.46 0.21 -4.99 16 13 C -0.64 -27.95 5.80 22.22 0.13 -27.82 16 14 S 2.72 98.26 5.52 -56.49 -0.31 97.95 16 15 O -0.98 -40.88 17.27 -128.00 -2.21 -43.09 16 16 O -0.96 -34.06 14.22 -128.00 -1.82 -35.88 16 17 N -1.05 -31.08 5.68 -51.25 -0.29 -31.37 16 18 C 0.13 3.75 6.25 38.19 0.24 3.99 16 19 C -0.17 -4.08 8.49 22.41 0.19 -3.89 16 20 C -0.07 -1.19 10.03 22.25 0.22 -0.97 16 21 C -0.13 -2.12 9.98 22.39 0.22 -1.89 16 22 C 0.09 2.12 6.71 22.51 0.15 2.27 16 23 O -0.50 -9.89 13.37 -93.02 -1.24 -11.13 16 24 C 0.02 0.64 7.32 22.56 0.17 0.80 16 25 F -0.14 -4.38 16.80 44.97 0.76 -3.63 16 26 C -0.14 -7.25 9.26 22.73 0.21 -7.04 16 27 H 0.29 13.52 8.30 -92.71 -0.77 12.75 16 28 H 0.12 6.05 6.24 -2.91 -0.02 6.04 16 29 H 0.13 4.78 8.06 -2.91 -0.02 4.75 16 30 H 0.14 4.76 6.93 -2.91 -0.02 4.74 16 31 H 0.43 11.05 8.79 -96.75 -0.85 10.20 16 32 H 0.17 4.29 5.12 -2.91 -0.01 4.28 16 33 H 0.18 1.75 8.06 -2.91 -0.02 1.73 16 34 H 0.17 1.75 8.06 -2.91 -0.02 1.72 16 35 H 0.41 3.64 9.06 -74.05 -0.67 2.97 16 36 H 0.11 5.28 7.60 -2.91 -0.02 5.26 16 Total: -1.00 -70.61 330.42 -0.49 -71.10 By element: Atomic # 1 Polarization: 31.41 SS G_CDS: -0.34 Total: 31.07 kcal Atomic # 6 Polarization: -75.44 SS G_CDS: 2.70 Total: -72.74 kcal Atomic # 7 Polarization: -73.92 SS G_CDS: -0.05 Total: -73.98 kcal Atomic # 8 Polarization: -84.83 SS G_CDS: -5.27 Total: -90.11 kcal Atomic # 9 Polarization: -4.38 SS G_CDS: 0.76 Total: -3.63 kcal Atomic # 14 Polarization: 38.30 SS G_CDS: 2.03 Total: 40.33 kcal Atomic # 16 Polarization: 98.26 SS G_CDS: -0.31 Total: 97.95 kcal Total: -70.61 -0.49 -71.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619463460.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.609 kcal (2) G-P(sol) polarization free energy of solvation -70.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds