Wall clock time and date at job start Tue Mar 31 2020 20:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34233 * 116.99841 * 2 1 4 4 O 1.20826 * 119.99967 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99801 * 179.97438 * 3 2 1 6 6 N 1.46503 * 109.46961 * 180.02562 * 5 3 2 7 7 C 1.36831 * 119.99770 * 270.00151 * 6 5 3 8 8 H 1.08001 * 119.99577 * 128.31578 * 7 6 5 9 9 C 1.39045 * 120.00219 * 308.31776 * 7 6 5 10 10 N 1.31370 * 119.99985 * 173.89037 * 9 7 6 11 11 Si 1.86803 * 119.99922 * 353.88880 * 9 7 6 12 12 H 1.48493 * 109.46995 * 94.97062 * 11 9 7 13 13 H 1.48492 * 109.47132 * 214.97125 * 11 9 7 14 14 H 1.48500 * 109.46834 * 334.97019 * 11 9 7 15 15 C 1.34766 * 120.00076 * 90.00144 * 6 5 3 16 16 O 1.21705 * 120.00390 * 3.93318 * 15 6 5 17 17 C 1.46791 * 120.00250 * 183.93930 * 15 6 5 18 18 C 1.33843 * 124.67175 * 172.88269 * 17 15 6 19 19 C 1.40334 * 115.55451 * 180.02562 * 18 17 15 20 20 C 1.40066 * 112.60384 * 359.97438 * 19 18 17 21 21 C 1.39821 * 119.95195 * 179.97438 * 20 19 18 22 22 C 1.37464 * 120.38976 * 0.02636 * 21 20 19 23 23 C 1.38871 * 120.22674 * 359.70327 * 22 21 20 24 24 C 1.37219 * 120.51353 * 0.55220 * 23 22 21 25 25 F 1.35104 * 119.83896 * 179.74299 * 24 23 22 26 26 S 1.75485 * 124.66537 * 352.89871 * 17 15 6 27 27 H 1.09002 * 109.47173 * 299.99398 * 1 2 3 28 28 H 1.08994 * 109.47192 * 59.99949 * 1 2 3 29 29 H 1.09003 * 109.47018 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46708 * 60.00703 * 5 3 2 31 31 H 1.08996 * 109.47238 * 300.00095 * 5 3 2 32 32 H 0.97002 * 119.99804 * 184.99294 * 10 9 7 33 33 H 1.07998 * 122.22238 * 0.03869 * 18 17 15 34 34 H 1.07997 * 119.80607 * 179.97438 * 21 20 19 35 35 H 1.07996 * 119.87982 * 179.97438 * 22 21 20 36 36 H 1.08002 * 119.74509 * 180.27832 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9817 2.6798 0.0011 7 6 4.1761 3.3362 -1.1837 8 1 3.6913 4.2848 -1.3613 9 6 4.9976 2.7818 -2.1590 10 7 5.0900 3.3494 -3.3401 11 14 5.9700 1.2302 -1.7896 12 1 5.2087 0.0452 -2.2600 13 1 7.2784 1.2877 -2.4893 14 1 6.1957 1.1243 -0.3256 15 6 4.1723 3.3257 1.1684 16 8 4.0694 2.7235 2.2210 17 6 4.5040 4.7557 1.1704 18 6 4.5792 5.5183 2.2678 19 6 4.9113 6.8640 2.0482 20 6 5.1051 7.1563 0.6921 21 6 5.4419 8.4552 0.2992 22 6 5.5852 9.4502 1.2367 23 6 5.3903 9.1748 2.5838 24 6 5.0643 7.9071 2.9957 25 9 4.8829 7.6533 4.3103 26 16 4.8562 5.7006 -0.2657 27 1 -0.3634 0.5137 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.9563 0.7807 -0.8892 31 1 3.9557 0.7810 0.8908 32 1 5.6053 2.9242 -4.0435 33 1 4.3966 5.1242 3.2565 34 1 5.5912 8.6778 -0.7470 35 1 5.8460 10.4505 0.9241 36 1 5.5005 9.9635 3.3134 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737860246.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:55 Heat of formation + Delta-G solvation = -104.006149 kcal Electronic energy + Delta-G solvation = -26422.449850 eV Core-core repulsion = 22299.508218 eV Total energy + Delta-G solvation = -4122.941632 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.062 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.65305 -40.19236 -39.18170 -38.65085 -36.12513 -35.24665 -34.62971 -32.45684 -30.21360 -29.85198 -28.53723 -26.74756 -25.43863 -23.80614 -22.84426 -21.35646 -20.38582 -19.39836 -18.41165 -17.58885 -17.20187 -16.99799 -16.09998 -15.93807 -15.86962 -15.62628 -15.40184 -15.17044 -14.81145 -14.32329 -14.26080 -13.75000 -13.35035 -13.27326 -13.08427 -12.88779 -12.71823 -12.60805 -12.23246 -12.01169 -11.74829 -11.45370 -11.34004 -11.21525 -10.88500 -10.76164 -10.47535 -10.43996 -10.12541 -9.89686 -9.38316 -9.16425 -9.09486 -8.21134 -8.09232 -7.14409 -6.80343 -4.73664 0.74411 1.40682 2.22551 2.33396 2.67065 2.70733 2.84604 2.95535 3.00957 3.03020 3.74802 3.76231 3.94876 4.02310 4.48345 4.57635 4.96454 5.02185 5.25385 5.31067 5.32340 5.35602 5.45036 5.52580 5.62460 5.69269 5.76520 5.92866 6.00643 6.24965 6.27522 6.51181 6.59667 6.69375 6.71552 6.91321 7.08984 7.59870 7.76206 8.23514 8.46259 8.78792 9.15426 10.17972 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.013695 B = 0.004391 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.034208 B = 6375.298764 C = 7501.215546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.368 6.368 3 C 0.449 3.551 4 O -0.488 6.488 5 C 0.113 3.887 6 N -0.450 5.450 7 C -0.352 4.352 8 H 0.122 0.878 9 C 0.084 3.916 10 N -0.830 5.830 11 Si 0.871 3.129 12 H -0.263 1.263 13 H -0.274 1.274 14 H -0.250 1.250 15 C 0.568 3.432 16 O -0.570 6.570 17 C -0.189 4.189 18 C -0.081 4.081 19 C -0.112 4.112 20 C -0.195 4.195 21 C -0.090 4.090 22 C -0.091 4.091 23 C -0.171 4.171 24 C 0.132 3.868 25 F -0.141 7.141 26 S 0.283 5.717 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.096 0.904 30 H 0.106 0.894 31 H 0.117 0.883 32 H 0.286 0.714 33 H 0.143 0.857 34 H 0.127 0.873 35 H 0.130 0.870 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.203 2.665 2.877 3.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.285 6.285 3 C 0.289 3.711 4 O -0.372 6.372 5 C -0.012 4.012 6 N -0.171 5.171 7 C -0.487 4.487 8 H 0.138 0.862 9 C -0.130 4.130 10 N -0.461 5.461 11 Si 0.696 3.304 12 H -0.188 1.188 13 H -0.199 1.199 14 H -0.174 1.174 15 C 0.358 3.642 16 O -0.454 6.454 17 C -0.308 4.308 18 C -0.115 4.115 19 C -0.121 4.121 20 C -0.310 4.310 21 C -0.111 4.111 22 C -0.114 4.114 23 C -0.192 4.192 24 C 0.111 3.889 25 F -0.119 7.119 26 S 0.561 5.439 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.114 0.886 30 H 0.123 0.877 31 H 0.135 0.865 32 H 0.097 0.903 33 H 0.161 0.839 34 H 0.145 0.855 35 H 0.148 0.852 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.294 2.358 1.688 2.915 hybrid contribution -0.002 -0.405 1.645 1.694 sum -0.297 1.953 3.334 3.875 Atomic orbital electron populations 1.23159 0.77280 1.02970 1.02351 1.86512 1.22841 1.34254 1.84857 1.24616 0.92726 0.81319 0.72438 1.90637 1.66566 1.36245 1.43801 1.21301 0.86938 0.87771 1.05142 1.43070 1.59279 1.08743 1.06031 1.18997 1.30119 1.06598 0.92939 0.86198 1.25595 0.94297 0.98193 0.94923 1.69583 1.36560 1.37868 1.02088 0.86895 0.80556 0.82083 0.80909 1.18848 1.19948 1.17395 1.17341 0.78128 0.85107 0.83621 1.90704 1.55624 1.67546 1.31539 1.23621 1.10546 0.98323 0.98335 1.19860 1.00977 0.90970 0.99650 1.18061 1.07780 0.93535 0.92771 1.25106 1.03203 1.03547 0.99111 1.20484 1.00497 0.90440 0.99724 1.20782 0.99738 0.99081 0.91775 1.20690 1.06259 0.94831 0.97429 1.17722 1.01186 0.93346 0.76668 1.91459 1.92678 1.94976 1.32805 1.86475 1.64883 0.91146 1.01375 0.92251 0.92111 0.88601 0.87654 0.86478 0.90335 0.83933 0.85463 0.85166 0.85115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 10.56 101.05 1.07 1.55 16 2 O -0.37 -6.36 10.57 -39.27 -0.41 -6.77 16 3 C 0.45 9.27 8.02 36.01 0.29 9.55 16 4 O -0.49 -11.44 16.18 -18.75 -0.30 -11.74 16 5 C 0.11 2.35 4.57 -5.19 -0.02 2.33 16 6 N -0.45 -10.46 1.48 -117.55 -0.17 -10.64 16 7 C -0.35 -8.41 7.19 -15.02 -0.11 -8.52 16 8 H 0.12 3.05 5.67 -32.34 -0.18 2.87 16 9 C 0.08 1.96 5.46 -17.45 -0.10 1.87 16 10 N -0.83 -19.96 13.95 55.50 0.77 -19.19 16 11 Si 0.87 17.73 24.82 -169.99 -4.22 13.51 16 12 H -0.26 -5.02 6.96 56.52 0.39 -4.63 16 13 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 14 H -0.25 -5.14 6.89 56.52 0.39 -4.75 16 15 C 0.57 13.53 7.60 -12.81 -0.10 13.43 16 16 O -0.57 -14.26 16.30 5.18 0.08 -14.17 16 17 C -0.19 -4.14 6.19 -37.67 -0.23 -4.37 16 18 C -0.08 -1.66 9.72 -40.34 -0.39 -2.06 16 19 C -0.11 -2.09 5.87 -107.08 -0.63 -2.72 16 20 C -0.19 -3.51 6.49 -38.30 -0.25 -3.76 16 21 C -0.09 -1.32 10.06 -39.27 -0.39 -1.72 16 22 C -0.09 -1.16 10.03 -39.63 -0.40 -1.56 16 23 C -0.17 -2.33 9.96 -39.72 -0.40 -2.73 16 24 C 0.13 2.20 7.37 -38.61 -0.28 1.91 16 25 F -0.14 -2.35 17.19 2.25 0.04 -2.31 16 26 S 0.28 5.72 18.45 -107.50 -1.98 3.73 16 27 H 0.06 0.79 8.13 -51.93 -0.42 0.37 16 28 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 29 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.11 2.07 4.03 -51.93 -0.21 1.86 16 31 H 0.12 2.26 7.37 -51.93 -0.38 1.88 16 32 H 0.29 6.35 8.31 -40.82 -0.34 6.01 16 33 H 0.14 2.85 7.97 -52.49 -0.42 2.43 16 34 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 35 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 36 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 330.90 15.07 4.99 4.99 Total: -1.00 -28.61 330.90 -6.04 -34.65 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -2.88 Total: 4.74 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: -1.94 Total: 3.20 kcal Atomic # 7 Polarization: -30.43 SS G_CDS: 0.60 Total: -29.83 kcal Atomic # 8 Polarization: -32.05 SS G_CDS: -0.63 Total: -32.69 kcal Atomic # 9 Polarization: -2.35 SS G_CDS: 0.04 Total: -2.31 kcal Atomic # 14 Polarization: 17.73 SS G_CDS: -4.22 Total: 13.51 kcal Atomic # 16 Polarization: 5.72 SS G_CDS: -1.98 Total: 3.73 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.61 -6.04 -34.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737860246.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.354 kcal (2) G-P(sol) polarization free energy of solvation -28.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds