Wall clock time and date at job start Tue Mar 31 2020 20:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34233 * 116.99841 * 2 1 4 4 O 1.20826 * 119.99967 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99801 * 179.97438 * 3 2 1 6 6 N 1.46503 * 109.46961 * 180.02562 * 5 3 2 7 7 C 1.36831 * 119.99770 * 270.00151 * 6 5 3 8 8 H 1.08001 * 119.99577 * 128.31578 * 7 6 5 9 9 C 1.39045 * 120.00219 * 308.31776 * 7 6 5 10 10 N 1.31370 * 119.99985 * 173.89037 * 9 7 6 11 11 Si 1.86803 * 119.99922 * 353.88880 * 9 7 6 12 12 H 1.48493 * 109.46995 * 94.97062 * 11 9 7 13 13 H 1.48492 * 109.47132 * 214.97125 * 11 9 7 14 14 H 1.48500 * 109.46834 * 334.97019 * 11 9 7 15 15 C 1.34766 * 120.00076 * 90.00144 * 6 5 3 16 16 O 1.21705 * 120.00390 * 3.93318 * 15 6 5 17 17 C 1.46791 * 120.00250 * 183.93930 * 15 6 5 18 18 C 1.33843 * 124.67175 * 172.88269 * 17 15 6 19 19 C 1.40334 * 115.55451 * 180.02562 * 18 17 15 20 20 C 1.40066 * 112.60384 * 359.97438 * 19 18 17 21 21 C 1.39821 * 119.95195 * 179.97438 * 20 19 18 22 22 C 1.37464 * 120.38976 * 0.02636 * 21 20 19 23 23 C 1.38871 * 120.22674 * 359.70327 * 22 21 20 24 24 C 1.37219 * 120.51353 * 0.55220 * 23 22 21 25 25 F 1.35104 * 119.83896 * 179.74299 * 24 23 22 26 26 S 1.75485 * 124.66537 * 352.89871 * 17 15 6 27 27 H 1.09002 * 109.47173 * 299.99398 * 1 2 3 28 28 H 1.08994 * 109.47192 * 59.99949 * 1 2 3 29 29 H 1.09003 * 109.47018 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46708 * 60.00703 * 5 3 2 31 31 H 1.08996 * 109.47238 * 300.00095 * 5 3 2 32 32 H 0.97002 * 119.99804 * 184.99294 * 10 9 7 33 33 H 1.07998 * 122.22238 * 0.03869 * 18 17 15 34 34 H 1.07997 * 119.80607 * 179.97438 * 21 20 19 35 35 H 1.07996 * 119.87982 * 179.97438 * 22 21 20 36 36 H 1.08002 * 119.74509 * 180.27832 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9817 2.6798 0.0011 7 6 4.1761 3.3362 -1.1837 8 1 3.6913 4.2848 -1.3613 9 6 4.9976 2.7818 -2.1590 10 7 5.0900 3.3494 -3.3401 11 14 5.9700 1.2302 -1.7896 12 1 5.2087 0.0452 -2.2600 13 1 7.2784 1.2877 -2.4893 14 1 6.1957 1.1243 -0.3256 15 6 4.1723 3.3257 1.1684 16 8 4.0694 2.7235 2.2210 17 6 4.5040 4.7557 1.1704 18 6 4.5792 5.5183 2.2678 19 6 4.9113 6.8640 2.0482 20 6 5.1051 7.1563 0.6921 21 6 5.4419 8.4552 0.2992 22 6 5.5852 9.4502 1.2367 23 6 5.3903 9.1748 2.5838 24 6 5.0643 7.9071 2.9957 25 9 4.8829 7.6533 4.3103 26 16 4.8562 5.7006 -0.2657 27 1 -0.3634 0.5137 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.9563 0.7807 -0.8892 31 1 3.9557 0.7810 0.8908 32 1 5.6053 2.9242 -4.0435 33 1 4.3966 5.1242 3.2565 34 1 5.5912 8.6778 -0.7470 35 1 5.8460 10.4505 0.9241 36 1 5.5005 9.9635 3.3134 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737860246.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:54 Heat of formation + Delta-G solvation = -119.821398 kcal Electronic energy + Delta-G solvation = -26423.135651 eV Core-core repulsion = 22299.508218 eV Total energy + Delta-G solvation = -4123.627433 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.062 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.93552 -41.82515 -40.74188 -40.09995 -37.70381 -36.94447 -36.10087 -34.23539 -31.57239 -31.26388 -29.95407 -28.05087 -27.19382 -25.24423 -24.19598 -22.80556 -21.90805 -21.07607 -19.92479 -19.19275 -18.80506 -18.43702 -17.55859 -17.41174 -17.35684 -17.17397 -16.70505 -16.62773 -16.25829 -15.98150 -15.84116 -15.11459 -14.86818 -14.76869 -14.58986 -14.33847 -14.10033 -14.07020 -13.73621 -13.57746 -13.14541 -13.01003 -12.60285 -12.57066 -12.49573 -12.14342 -12.04133 -11.85203 -11.79092 -11.52857 -11.09096 -10.87559 -10.45117 -9.94361 -9.52998 -8.69334 -8.47004 -6.54978 -0.68844 0.17095 0.70761 0.86046 1.06763 1.13864 1.27831 1.33991 1.40793 1.49560 2.08618 2.16112 2.32719 2.61048 2.81289 3.24791 3.59860 3.81131 3.85886 3.92304 3.97346 4.05434 4.19303 4.28559 4.29136 4.35304 4.62383 4.63293 4.72995 4.84404 5.06198 5.14912 5.20612 5.25079 5.29351 5.37731 5.84316 5.90225 5.92104 6.65709 6.67486 6.99137 7.37021 8.44878 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.013695 B = 0.004391 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.034208 B = 6375.298764 C = 7501.215546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.362 6.362 3 C 0.453 3.547 4 O -0.524 6.524 5 C 0.104 3.896 6 N -0.453 5.453 7 C -0.361 4.361 8 H 0.099 0.901 9 C 0.057 3.943 10 N -0.861 5.861 11 Si 0.909 3.091 12 H -0.238 1.238 13 H -0.269 1.269 14 H -0.257 1.257 15 C 0.557 3.443 16 O -0.597 6.597 17 C -0.225 4.225 18 C -0.073 4.073 19 C -0.140 4.140 20 C -0.192 4.192 21 C -0.100 4.100 22 C -0.063 4.063 23 C -0.152 4.152 24 C 0.114 3.886 25 F -0.145 7.145 26 S 0.256 5.744 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.142 0.858 30 H 0.118 0.882 31 H 0.129 0.871 32 H 0.292 0.708 33 H 0.136 0.864 34 H 0.151 0.849 35 H 0.183 0.817 36 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.470 4.316 3.102 5.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.278 6.278 3 C 0.295 3.705 4 O -0.412 6.412 5 C -0.020 4.020 6 N -0.174 5.174 7 C -0.494 4.494 8 H 0.116 0.884 9 C -0.155 4.155 10 N -0.493 5.493 11 Si 0.731 3.269 12 H -0.162 1.162 13 H -0.195 1.195 14 H -0.181 1.181 15 C 0.348 3.652 16 O -0.483 6.483 17 C -0.344 4.344 18 C -0.107 4.107 19 C -0.149 4.149 20 C -0.308 4.308 21 C -0.122 4.122 22 C -0.084 4.084 23 C -0.173 4.173 24 C 0.093 3.907 25 F -0.124 7.124 26 S 0.532 5.468 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.160 0.840 30 H 0.135 0.865 31 H 0.147 0.853 32 H 0.102 0.898 33 H 0.154 0.846 34 H 0.168 0.832 35 H 0.200 0.800 36 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 0.356 3.948 1.882 4.388 hybrid contribution -0.252 -0.659 1.695 1.835 sum 0.104 3.289 3.577 4.861 Atomic orbital electron populations 1.23575 0.74730 1.05957 1.02246 1.86485 1.25202 1.32071 1.84005 1.24502 0.92705 0.81715 0.71597 1.90620 1.67281 1.37613 1.45720 1.21458 0.87554 0.86758 1.06211 1.43118 1.59115 1.09541 1.05612 1.18876 1.30526 1.06825 0.93219 0.88404 1.26029 0.94543 1.00400 0.94491 1.69630 1.37614 1.39203 1.02810 0.86302 0.79917 0.80320 0.80349 1.16232 1.19466 1.18110 1.17698 0.77882 0.86016 0.83558 1.90649 1.57129 1.68352 1.32133 1.23550 1.13391 0.97986 0.99506 1.20005 0.99720 0.92069 0.98927 1.18172 1.09453 0.93284 0.93950 1.25001 1.03830 1.03874 0.98049 1.20915 1.00230 0.89269 1.01767 1.21394 0.95921 1.00525 0.90604 1.21236 1.03112 0.94099 0.98863 1.17980 1.02417 0.94075 0.76253 1.91448 1.92846 1.95135 1.32953 1.86241 1.66273 0.92607 1.01661 0.92451 0.92246 0.84018 0.86471 0.85337 0.89776 0.84585 0.83166 0.80015 0.81268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 10.56 113.37 1.20 1.91 16 2 O -0.36 -12.25 10.57 -51.45 -0.54 -12.79 16 3 C 0.45 19.04 8.02 71.24 0.57 19.61 16 4 O -0.52 -25.48 16.18 21.96 0.36 -25.13 16 5 C 0.10 4.41 4.57 85.63 0.39 4.80 16 6 N -0.45 -21.95 1.48 -644.03 -0.95 -22.91 16 7 C -0.36 -18.04 7.19 84.11 0.60 -17.43 16 8 H 0.10 5.30 5.67 -15.72 -0.09 5.21 16 9 C 0.06 2.71 5.46 84.96 0.46 3.17 16 10 N -0.86 -42.34 13.95 21.68 0.30 -42.04 16 11 Si 0.91 36.28 24.82 68.60 1.70 37.98 16 12 H -0.24 -8.51 6.96 99.48 0.69 -7.82 16 13 H -0.27 -10.49 7.11 99.48 0.71 -9.79 16 14 H -0.26 -10.50 6.89 99.48 0.69 -9.81 16 15 C 0.56 27.98 7.60 86.48 0.66 28.64 16 16 O -0.60 -31.31 16.30 -4.36 -0.07 -31.38 16 17 C -0.23 -10.46 6.19 23.51 0.15 -10.31 16 18 C -0.07 -3.12 9.72 21.78 0.21 -2.91 16 19 C -0.14 -5.24 5.87 -21.46 -0.13 -5.37 16 20 C -0.19 -6.83 6.49 23.10 0.15 -6.68 16 21 C -0.10 -2.63 10.06 22.47 0.23 -2.40 16 22 C -0.06 -1.24 10.03 22.24 0.22 -1.02 16 23 C -0.15 -3.45 9.96 22.18 0.22 -3.23 16 24 C 0.11 3.58 7.37 22.90 0.17 3.75 16 25 F -0.15 -4.68 17.19 44.97 0.77 -3.91 16 26 S 0.26 10.78 18.45 -56.49 -1.04 9.74 16 27 H 0.06 1.49 8.13 -2.39 -0.02 1.47 16 28 H 0.06 1.54 8.13 -2.39 -0.02 1.52 16 29 H 0.14 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.12 4.59 4.03 -2.39 -0.01 4.58 16 31 H 0.13 5.06 7.37 -2.39 -0.02 5.04 16 32 H 0.29 13.14 8.31 -92.71 -0.77 12.37 16 33 H 0.14 5.79 7.97 -2.91 -0.02 5.77 16 34 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 35 H 0.18 1.90 8.06 -2.91 -0.02 1.88 16 36 H 0.17 2.60 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -66.05 330.90 6.67 -59.37 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: 1.05 Total: 18.52 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: 5.10 Total: 12.53 kcal Atomic # 7 Polarization: -64.29 SS G_CDS: -0.65 Total: -64.94 kcal Atomic # 8 Polarization: -69.04 SS G_CDS: -0.26 Total: -69.30 kcal Atomic # 9 Polarization: -4.68 SS G_CDS: 0.77 Total: -3.91 kcal Atomic # 14 Polarization: 36.28 SS G_CDS: 1.70 Total: 37.98 kcal Atomic # 16 Polarization: 10.78 SS G_CDS: -1.04 Total: 9.74 kcal Total: -66.05 6.67 -59.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737860246.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.447 kcal (2) G-P(sol) polarization free energy of solvation -66.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds