Wall clock time and date at job start Tue Mar 31 2020 19:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31299 * 1 3 3 Si 1.86794 * 120.00086 * 2 1 4 4 H 1.48498 * 109.47590 * 274.97730 * 3 2 1 5 5 H 1.48505 * 109.47184 * 34.97884 * 3 2 1 6 6 H 1.48510 * 109.47173 * 154.97675 * 3 2 1 7 7 C 1.38979 * 119.99707 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99629 * 185.94298 * 7 2 1 9 9 N 1.37312 * 120.00270 * 5.93993 * 7 2 1 10 10 C 1.36602 * 126.07596 * 174.14208 * 9 7 2 11 11 C 1.35632 * 107.50120 * 180.02562 * 10 9 7 12 12 N 1.40572 * 126.07935 * 179.97438 * 11 10 9 13 13 S 1.65595 * 120.00340 * 134.99870 * 12 11 10 14 14 O 1.42096 * 106.40511 * 311.46516 * 13 12 11 15 15 O 1.42094 * 106.40601 * 178.54397 * 13 12 11 16 16 C 1.76205 * 107.21814 * 65.00519 * 13 12 11 17 17 C 1.38386 * 119.92204 * 269.72474 * 16 13 12 18 18 C 1.38350 * 120.30161 * 179.76046 * 17 16 13 19 19 C 1.37966 * 120.14633 * 0.51807 * 18 17 16 20 20 C 1.39604 * 119.84817 * 359.74074 * 19 18 17 21 21 C 1.47727 * 120.14632 * 180.02562 * 20 19 18 22 22 O 1.21471 * 119.99854 * 179.97438 * 21 20 19 23 23 O 1.34715 * 120.00314 * 359.97438 * 21 20 19 24 24 C 1.37915 * 119.92456 * 89.99951 * 16 13 12 25 25 C 1.40661 * 107.85301 * 0.22831 * 11 10 9 26 26 N 1.30939 * 108.39829 * 359.60873 * 25 11 10 27 27 H 0.97002 * 120.00250 * 0.02562 * 1 2 3 28 28 H 1.07999 * 126.25026 * 0.06550 * 10 9 7 29 29 H 0.97000 * 119.99628 * 315.00678 * 12 11 10 30 30 H 1.08006 * 119.85245 * 0.02562 * 17 16 13 31 31 H 1.07997 * 119.92850 * 180.25397 * 18 17 16 32 32 H 1.08005 * 120.07300 * 179.76710 * 19 18 17 33 33 H 0.96700 * 116.99845 * 180.02562 * 23 21 20 34 34 H 1.08000 * 120.08201 * 359.95549 * 24 16 13 35 35 H 1.07992 * 125.80331 * 179.77500 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 2.3894 2.1072 -1.3947 5 1 1.5010 2.6200 0.8026 6 1 3.5933 1.4120 0.5922 7 6 2.0078 -1.2036 -0.0005 8 1 3.0835 -1.2062 0.0963 9 7 1.3268 -2.3895 -0.1241 10 6 1.8865 -3.6290 -0.2520 11 6 0.8737 -4.5262 -0.3466 12 7 1.0112 -5.9176 -0.4914 13 16 0.0819 -6.9409 0.4205 14 8 0.1803 -6.4838 1.7624 15 8 0.4277 -8.2601 0.0216 16 6 -1.5939 -6.6971 -0.0665 17 6 -2.3708 -5.7531 0.5820 18 6 -3.6860 -5.5518 0.2027 19 6 -4.2349 -6.2994 -0.8187 20 6 -3.4583 -7.2571 -1.4735 21 6 -4.0391 -8.0609 -2.5684 22 8 -3.3608 -8.8931 -3.1366 23 8 -5.3209 -7.8711 -2.9367 24 6 -2.1298 -7.4513 -1.0891 25 6 -0.3388 -3.8163 -0.2800 26 7 -0.0653 -2.5432 -0.1420 27 1 -0.4850 0.8400 -0.0004 28 1 2.9427 -3.8537 -0.2732 29 1 1.6505 -6.2784 -1.1254 30 1 -1.9474 -5.1680 1.3849 31 1 -4.2857 -4.8107 0.7102 32 1 -5.2628 -6.1439 -1.1113 33 1 -5.6565 -8.4210 -3.6579 34 1 -1.5236 -8.1903 -1.5919 35 1 -1.3273 -4.2481 -0.3310 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000747407806.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:37 Heat of formation + Delta-G solvation = -73.689361 kcal Electronic energy + Delta-G solvation = -26271.644137 eV Core-core repulsion = 22169.937102 eV Total energy + Delta-G solvation = -4101.707036 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.061 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.59159 -41.43086 -39.84452 -38.39574 -37.17178 -37.04622 -36.25657 -34.82573 -32.98467 -32.43396 -32.13032 -29.25558 -26.77631 -25.99813 -24.51495 -22.72992 -22.48875 -21.78607 -20.72648 -19.83662 -19.20916 -18.90327 -18.42428 -17.58363 -17.28229 -17.16967 -17.09219 -16.76109 -16.45799 -15.87689 -15.57064 -15.28212 -15.12546 -15.04195 -14.50490 -14.16552 -13.76626 -13.53021 -13.47894 -13.37789 -13.27237 -13.19443 -12.86135 -12.82960 -12.72423 -12.65163 -12.19418 -12.05348 -11.87374 -11.65328 -11.22337 -10.76493 -10.61096 -10.29626 -10.12916 -8.84767 -8.47501 -6.26337 -0.78812 -0.59474 -0.23245 1.26933 1.29930 1.43477 1.59710 1.73586 1.84364 1.92026 2.14434 2.19434 2.39640 2.69105 2.83806 3.08534 3.26089 3.62774 3.73481 3.84819 3.98620 4.18616 4.25360 4.47733 4.54948 4.64149 4.65430 4.83160 4.92733 4.95335 5.07411 5.24576 5.42874 5.47212 5.53020 5.91102 6.07248 6.32715 6.74955 6.87696 7.41854 7.61171 8.51997 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.015367 B = 0.003458 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.594544 B = 8094.257776 C = 9130.524532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.002 3.998 3 Si 1.014 2.986 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.249 1.249 7 C -0.356 4.356 8 H 0.136 0.864 9 N -0.166 5.166 10 C -0.064 4.064 11 C -0.040 4.040 12 N -1.011 6.011 13 S 2.715 3.285 14 O -0.978 6.978 15 O -0.976 6.976 16 C -0.689 4.689 17 C 0.003 3.997 18 C -0.144 4.144 19 C 0.008 3.992 20 C -0.164 4.164 21 C 0.539 3.461 22 O -0.544 6.544 23 O -0.497 6.497 24 C 0.035 3.965 25 C -0.076 4.076 26 N -0.291 5.291 27 H 0.278 0.722 28 H 0.179 0.821 29 H 0.426 0.574 30 H 0.145 0.855 31 H 0.175 0.825 32 H 0.182 0.818 33 H 0.437 0.563 34 H 0.151 0.849 35 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.699 -9.201 -3.429 13.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.211 4.211 3 Si 0.834 3.166 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.172 1.172 7 C -0.487 4.487 8 H 0.153 0.847 9 N 0.065 4.935 10 C -0.215 4.215 11 C -0.149 4.149 12 N -0.766 5.766 13 S 2.806 3.194 14 O -0.968 6.968 15 O -0.966 6.966 16 C -0.778 4.778 17 C -0.016 4.016 18 C -0.163 4.163 19 C -0.010 4.010 20 C -0.166 4.166 21 C 0.384 3.616 22 O -0.436 6.436 23 O -0.311 6.311 24 C 0.015 3.985 25 C -0.253 4.253 26 N -0.121 5.121 27 H 0.088 0.912 28 H 0.197 0.803 29 H 0.264 0.736 30 H 0.162 0.838 31 H 0.192 0.808 32 H 0.199 0.801 33 H 0.300 0.700 34 H 0.168 0.832 35 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -8.873 -8.412 -2.381 12.457 hybrid contribution 0.283 -0.501 -1.229 1.357 sum -8.590 -8.913 -3.610 12.894 Atomic orbital electron populations 1.70327 1.08045 1.29216 1.36862 1.26718 0.96497 1.03826 0.94062 0.84638 0.78505 0.74616 0.78883 1.19225 1.19963 1.17194 1.20577 0.93397 0.81089 1.53635 0.84651 1.44839 1.03694 1.05113 1.39853 1.22319 0.99387 0.85084 1.14747 1.16730 0.92792 0.82685 1.22645 1.52011 1.54728 1.12230 1.57668 1.01109 0.73681 0.71632 0.72979 1.93554 1.86239 1.81865 1.35159 1.93556 1.83565 1.35894 1.83627 1.30700 1.25567 1.10496 1.11003 1.21502 0.94696 0.90478 0.94910 1.21731 0.94723 1.01313 0.98497 1.22147 1.00870 0.88182 0.89804 1.19237 0.95090 1.02356 0.99899 1.20596 0.80190 0.79642 0.81129 1.90910 1.62391 1.35326 1.54995 1.84479 1.26404 1.64236 1.55957 1.21005 0.94264 0.93075 0.90145 1.24326 0.98324 0.92073 1.10542 1.78095 0.92038 1.15869 1.26133 0.91184 0.80347 0.73582 0.83773 0.80777 0.80115 0.70005 0.83171 0.80392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.64 11.84 21.66 0.26 -43.38 16 2 C 0.00 0.08 5.50 84.95 0.47 0.55 16 3 Si 1.01 36.84 29.56 68.60 2.03 38.87 16 4 H -0.27 -9.46 7.11 99.48 0.71 -8.75 16 5 H -0.27 -9.81 7.11 99.48 0.71 -9.11 16 6 H -0.25 -8.35 7.11 99.48 0.71 -7.65 16 7 C -0.36 -18.05 10.24 84.01 0.86 -17.19 16 8 H 0.14 6.09 7.84 -2.91 -0.02 6.06 16 9 N -0.17 -8.70 3.74 -189.98 -0.71 -9.41 16 10 C -0.06 -2.86 11.50 83.35 0.96 -1.90 16 11 C -0.04 -1.70 6.41 37.73 0.24 -1.46 16 12 N -1.01 -33.80 5.93 -51.65 -0.31 -34.11 16 13 S 2.71 90.25 5.61 -56.49 -0.32 89.93 16 14 O -0.98 -38.87 16.99 -128.00 -2.17 -41.04 16 15 O -0.98 -33.74 17.27 -128.00 -2.21 -35.95 16 16 C -0.69 -20.27 5.21 22.23 0.12 -20.15 16 17 C 0.00 0.09 6.35 22.33 0.14 0.24 16 18 C -0.14 -2.96 10.03 22.23 0.22 -2.73 16 19 C 0.01 0.14 9.62 22.54 0.22 0.36 16 20 C -0.16 -3.78 5.87 -20.10 -0.12 -3.90 16 21 C 0.54 11.63 8.27 70.33 0.58 12.21 16 22 O -0.54 -15.30 17.13 19.93 0.34 -14.96 16 23 O -0.50 -6.39 12.68 -56.24 -0.71 -7.10 16 24 C 0.03 0.95 9.07 22.53 0.20 1.15 16 25 C -0.08 -3.43 10.72 85.42 0.92 -2.52 16 26 N -0.29 -15.59 10.42 -56.45 -0.59 -16.17 16 27 H 0.28 13.60 8.31 -92.71 -0.77 12.83 16 28 H 0.18 6.69 8.06 -2.91 -0.02 6.66 16 29 H 0.43 11.62 8.96 -96.75 -0.87 10.75 16 30 H 0.14 4.28 7.18 -2.91 -0.02 4.26 16 31 H 0.17 2.53 8.06 -2.91 -0.02 2.51 16 32 H 0.18 2.01 7.61 -2.91 -0.02 1.99 16 33 H 0.44 1.64 9.11 -74.06 -0.67 0.96 16 34 H 0.15 4.11 7.20 -2.91 -0.02 4.09 16 35 H 0.18 6.89 4.22 -2.91 -0.01 6.88 16 Total: -1.00 -77.24 327.83 0.08 -77.17 By element: Atomic # 1 Polarization: 31.84 SS G_CDS: -0.34 Total: 31.50 kcal Atomic # 6 Polarization: -40.14 SS G_CDS: 4.81 Total: -35.33 kcal Atomic # 7 Polarization: -101.73 SS G_CDS: -1.35 Total: -103.08 kcal Atomic # 8 Polarization: -94.30 SS G_CDS: -4.76 Total: -99.06 kcal Atomic # 14 Polarization: 36.84 SS G_CDS: 2.03 Total: 38.87 kcal Atomic # 16 Polarization: 90.25 SS G_CDS: -0.32 Total: 89.93 kcal Total: -77.24 0.08 -77.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747407806.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.477 kcal (2) G-P(sol) polarization free energy of solvation -77.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds