Wall clock time and date at job start Tue Mar 31 2020 19:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00128 * 2 1 4 4 H 1.48497 * 109.47047 * 270.00717 * 3 2 1 5 5 H 1.48502 * 109.46865 * 30.00031 * 3 2 1 6 6 H 1.48496 * 109.47164 * 150.00430 * 3 2 1 7 7 C 1.37882 * 120.00187 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99461 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00113 * 179.97438 * 7 2 1 10 10 N 1.46499 * 109.47001 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99865 * 180.02562 * 10 9 7 12 12 O 1.21287 * 120.00145 * 359.97438 * 11 10 9 13 13 C 1.50705 * 120.00073 * 179.97438 * 11 10 9 14 14 O 1.45195 * 109.47075 * 179.97438 * 13 11 10 15 15 C 1.34858 * 116.99968 * 179.97438 * 14 13 11 16 16 O 1.21578 * 119.99898 * 0.02562 * 15 14 13 17 17 C 1.46806 * 120.00399 * 180.02562 * 15 14 13 18 18 C 1.35898 * 125.14697 * 180.29537 * 17 15 14 19 19 C 1.46220 * 106.07419 * 180.08455 * 18 17 15 20 20 C 1.39744 * 134.16596 * 179.97438 * 19 18 17 21 21 C 1.36611 * 119.73591 * 179.72426 * 20 19 18 22 22 C 1.38836 * 120.44916 * 359.95939 * 21 20 19 23 23 C 1.37890 * 120.74001 * 0.02562 * 22 21 20 24 24 Cl 1.73600 * 120.08683 * 180.02562 * 23 22 21 25 25 C 1.39139 * 119.83166 * 0.02562 * 23 22 21 26 26 O 1.34730 * 133.23432 * 180.02562 * 25 23 22 27 27 H 0.97005 * 120.00235 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47034 * 59.99793 * 9 7 2 29 29 H 1.08999 * 109.47017 * 300.00029 * 9 7 2 30 30 H 0.96997 * 120.00186 * 359.97438 * 10 9 7 31 31 H 1.09004 * 109.46476 * 59.99652 * 13 11 10 32 32 H 1.09003 * 109.46898 * 300.00135 * 13 11 10 33 33 H 1.08001 * 126.95943 * 359.73340 * 18 17 15 34 34 H 1.08001 * 120.13926 * 359.69422 * 20 19 18 35 35 H 1.07995 * 119.77781 * 179.97438 * 21 20 19 36 36 H 1.08000 * 119.63088 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 7 3.9999 -2.5753 -0.0022 11 6 5.3249 -2.8215 -0.0024 12 8 6.1131 -1.8997 -0.0021 13 6 5.8273 -4.2424 -0.0030 14 8 7.2793 -4.2423 -0.0036 15 6 7.8915 -5.4439 -0.0037 16 8 7.2294 -6.4635 -0.0036 17 6 9.3576 -5.5208 -0.0038 18 6 10.0806 -6.6714 -0.0095 19 6 11.4857 -6.2667 -0.0051 20 6 12.6988 -6.9604 -0.0070 21 6 13.8759 -6.2670 -0.0070 22 6 13.8746 -4.8787 -0.0061 23 6 12.6888 -4.1749 -0.0045 24 17 12.7071 -2.4390 -0.0040 25 6 11.4776 -4.8596 -0.0034 26 8 10.1912 -4.4593 -0.0022 27 1 -0.4851 0.8401 0.0004 28 1 3.8752 -0.6804 0.8888 29 1 3.8745 -0.6800 -0.8911 30 1 3.3696 -3.3125 -0.0021 31 1 5.4638 -4.7558 -0.8932 32 1 5.4640 -4.7565 0.8869 33 1 9.6954 -7.6804 -0.0108 34 1 12.7059 -8.0404 -0.0079 35 1 14.8138 -6.8024 -0.0081 36 1 14.8129 -4.3439 -0.0057 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753516477.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:19 Heat of formation + Delta-G solvation = -88.453282 kcal Electronic energy + Delta-G solvation = -24640.803861 eV Core-core repulsion = 20504.120156 eV Total energy + Delta-G solvation = -4136.683705 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.060 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.08634 -40.66700 -38.94726 -38.59578 -36.88790 -36.70831 -34.40943 -33.28225 -32.45567 -31.03818 -30.53397 -29.47265 -27.33620 -25.12191 -23.42667 -22.46259 -22.05501 -21.23976 -20.17991 -19.00335 -18.17437 -17.67849 -17.27513 -17.05132 -16.78681 -16.40686 -16.00484 -15.46364 -15.14792 -15.02472 -14.80151 -14.24941 -13.96035 -13.65171 -13.54697 -13.27709 -13.21289 -12.78651 -12.71431 -12.39696 -12.14133 -12.11029 -11.92726 -11.39637 -11.30683 -11.07607 -10.98387 -10.79202 -10.57372 -10.01102 -9.56146 -9.39804 -9.31264 -8.83234 -8.79780 -8.29928 -6.25385 -4.28592 -0.17521 0.63504 1.07571 1.57897 1.68372 2.28259 2.40549 2.95820 2.98137 3.25002 3.31815 3.40073 3.61689 3.97657 4.05172 4.21631 4.30179 4.44427 4.53957 4.67817 4.71404 4.93232 4.97898 5.05141 5.10402 5.15335 5.34211 5.43627 5.57138 5.71108 5.87382 5.88272 6.33951 6.71170 6.99278 7.05316 7.24150 7.29962 8.01869 8.38615 8.65106 8.77247 9.33603 10.86265 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.018878 B = 0.002177 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.826374 B =12858.059829 C =14320.439578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.079 3.921 3 Si 0.876 3.124 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.546 4.546 8 H 0.081 0.919 9 C 0.222 3.778 10 N -0.698 5.698 11 C 0.501 3.499 12 O -0.532 6.532 13 C 0.048 3.952 14 O -0.313 6.313 15 C 0.549 3.451 16 O -0.478 6.478 17 C 0.004 3.996 18 C -0.097 4.097 19 C -0.136 4.136 20 C -0.051 4.051 21 C -0.128 4.128 22 C -0.070 4.070 23 C -0.031 4.031 24 Cl -0.045 7.045 25 C 0.082 3.918 26 O -0.155 6.155 27 H 0.268 0.732 28 H 0.028 0.972 29 H 0.024 0.976 30 H 0.399 0.601 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.181 0.819 34 H 0.140 0.860 35 H 0.144 0.856 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.860 -16.775 0.007 33.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.584 4.584 8 H 0.099 0.901 9 C 0.101 3.899 10 N -0.349 5.349 11 C 0.284 3.716 12 O -0.409 6.409 13 C -0.029 4.029 14 O -0.227 6.227 15 C 0.392 3.608 16 O -0.367 6.367 17 C -0.045 4.045 18 C -0.117 4.117 19 C -0.137 4.137 20 C -0.069 4.069 21 C -0.146 4.146 22 C -0.089 4.089 23 C -0.058 4.058 24 Cl -0.016 7.016 25 C 0.032 3.968 26 O -0.056 6.056 27 H 0.078 0.922 28 H 0.046 0.954 29 H 0.042 0.958 30 H 0.233 0.767 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.198 0.802 34 H 0.158 0.842 35 H 0.161 0.839 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 28.895 -15.779 0.010 32.923 hybrid contribution -0.212 0.551 -0.023 0.591 sum 28.683 -15.228 -0.012 32.475 Atomic orbital electron populations 1.69873 1.06205 1.27527 1.49109 1.24788 0.94809 0.99194 0.93774 0.86821 0.80592 0.83192 0.79133 1.19773 1.20822 1.18448 1.21057 0.88294 0.95349 1.53724 0.90091 1.19567 0.95381 0.77863 0.97139 1.46051 1.04712 1.11607 1.72514 1.19852 0.83809 0.89253 0.78686 1.90733 1.55265 1.45534 1.49412 1.22990 0.76546 0.97977 1.05375 1.86726 1.22669 1.30507 1.82802 1.19262 0.85322 0.82458 0.73752 1.90971 1.63917 1.35914 1.45937 1.20650 0.88159 0.85708 1.09956 1.22772 0.89775 0.98971 1.00166 1.19809 0.94159 0.91919 1.07801 1.20489 0.89620 1.00636 0.96135 1.20794 0.98702 0.93102 1.02047 1.21027 0.95919 0.94383 0.97544 1.19812 0.90210 0.86102 1.09660 1.98427 1.98820 1.07543 1.96832 1.19348 0.83445 0.92550 1.01443 1.84266 1.13353 1.33090 1.74843 0.92169 0.95366 0.95831 0.76658 0.87702 0.87694 0.80190 0.84173 0.83859 0.83295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.17 13.96 55.43 0.77 -25.40 16 2 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 3 Si 0.88 21.28 27.47 -169.99 -4.67 16.61 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 7 C -0.55 -14.74 9.83 -34.44 -0.34 -15.08 16 8 H 0.08 2.26 7.84 -52.49 -0.41 1.84 16 9 C 0.22 5.37 4.50 -5.20 -0.02 5.35 16 10 N -0.70 -13.69 5.55 -61.47 -0.34 -14.03 16 11 C 0.50 9.51 7.91 -10.98 -0.09 9.42 16 12 O -0.53 -12.46 16.50 -14.11 -0.23 -12.69 16 13 C 0.05 0.69 5.96 36.01 0.21 0.90 16 14 O -0.31 -4.92 9.77 -48.43 -0.47 -5.40 16 15 C 0.55 7.42 7.94 34.19 0.27 7.70 16 16 O -0.48 -6.57 16.62 -19.32 -0.32 -6.89 16 17 C 0.00 0.05 7.10 -36.96 -0.26 -0.22 16 18 C -0.10 -0.89 10.81 -37.22 -0.40 -1.29 16 19 C -0.14 -1.20 6.38 -105.20 -0.67 -1.87 16 20 C -0.05 -0.29 10.06 -39.61 -0.40 -0.69 16 21 C -0.13 -0.61 9.98 -39.95 -0.40 -1.01 16 22 C -0.07 -0.43 9.79 -39.49 -0.39 -0.82 16 23 C -0.03 -0.29 6.33 -39.37 -0.25 -0.54 16 24 Cl -0.05 -0.47 28.96 -51.86 -1.50 -1.98 16 25 C 0.08 0.91 7.20 -38.32 -0.28 0.64 16 26 O -0.16 -2.10 10.60 1.89 0.02 -2.08 16 27 H 0.27 7.38 8.31 -40.82 -0.34 7.05 16 28 H 0.03 0.72 7.20 -51.93 -0.37 0.35 16 29 H 0.02 0.60 7.57 -51.93 -0.39 0.20 16 30 H 0.40 6.65 8.32 -40.82 -0.34 6.31 16 31 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.18 1.17 8.06 -52.49 -0.42 0.75 16 34 H 0.14 0.42 8.06 -52.49 -0.42 -0.01 16 35 H 0.14 0.24 8.06 -52.49 -0.42 -0.18 16 36 H 0.15 0.56 8.06 -52.49 -0.42 0.14 16 LS Contribution 347.18 15.07 5.23 5.23 Total: -1.00 -34.50 347.18 -7.84 -42.34 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: -3.22 Total: -0.30 kcal Atomic # 6 Polarization: 7.69 SS G_CDS: -3.11 Total: 4.58 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: 0.43 Total: -39.43 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -1.01 Total: -27.06 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.67 Total: 16.61 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -1.50 Total: -1.98 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.50 -7.84 -42.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753516477.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.113 kcal (2) G-P(sol) polarization free energy of solvation -34.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds