Wall clock time and date at job start Tue Mar 31 2020 19:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00128 * 2 1 4 4 H 1.48497 * 109.47047 * 270.00717 * 3 2 1 5 5 H 1.48502 * 109.46865 * 30.00031 * 3 2 1 6 6 H 1.48496 * 109.47164 * 150.00430 * 3 2 1 7 7 C 1.37882 * 120.00187 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99461 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00113 * 179.97438 * 7 2 1 10 10 N 1.46499 * 109.47001 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99865 * 180.02562 * 10 9 7 12 12 O 1.21287 * 120.00145 * 359.97438 * 11 10 9 13 13 C 1.50705 * 120.00073 * 179.97438 * 11 10 9 14 14 O 1.45195 * 109.47075 * 179.97438 * 13 11 10 15 15 C 1.34858 * 116.99968 * 179.97438 * 14 13 11 16 16 O 1.21578 * 119.99898 * 0.02562 * 15 14 13 17 17 C 1.46806 * 120.00399 * 180.02562 * 15 14 13 18 18 C 1.35898 * 125.14697 * 180.29537 * 17 15 14 19 19 C 1.46220 * 106.07419 * 180.08455 * 18 17 15 20 20 C 1.39744 * 134.16596 * 179.97438 * 19 18 17 21 21 C 1.36611 * 119.73591 * 179.72426 * 20 19 18 22 22 C 1.38836 * 120.44916 * 359.95939 * 21 20 19 23 23 C 1.37890 * 120.74001 * 0.02562 * 22 21 20 24 24 Cl 1.73600 * 120.08683 * 180.02562 * 23 22 21 25 25 C 1.39139 * 119.83166 * 0.02562 * 23 22 21 26 26 O 1.34730 * 133.23432 * 180.02562 * 25 23 22 27 27 H 0.97005 * 120.00235 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47034 * 59.99793 * 9 7 2 29 29 H 1.08999 * 109.47017 * 300.00029 * 9 7 2 30 30 H 0.96997 * 120.00186 * 359.97438 * 10 9 7 31 31 H 1.09004 * 109.46476 * 59.99652 * 13 11 10 32 32 H 1.09003 * 109.46898 * 300.00135 * 13 11 10 33 33 H 1.08001 * 126.95943 * 359.73340 * 18 17 15 34 34 H 1.08001 * 120.13926 * 359.69422 * 20 19 18 35 35 H 1.07995 * 119.77781 * 179.97438 * 21 20 19 36 36 H 1.08000 * 119.63088 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 7 3.9999 -2.5753 -0.0022 11 6 5.3249 -2.8215 -0.0024 12 8 6.1131 -1.8997 -0.0021 13 6 5.8273 -4.2424 -0.0030 14 8 7.2793 -4.2423 -0.0036 15 6 7.8915 -5.4439 -0.0037 16 8 7.2294 -6.4635 -0.0036 17 6 9.3576 -5.5208 -0.0038 18 6 10.0806 -6.6714 -0.0095 19 6 11.4857 -6.2667 -0.0051 20 6 12.6988 -6.9604 -0.0070 21 6 13.8759 -6.2670 -0.0070 22 6 13.8746 -4.8787 -0.0061 23 6 12.6888 -4.1749 -0.0045 24 17 12.7071 -2.4390 -0.0040 25 6 11.4776 -4.8596 -0.0034 26 8 10.1912 -4.4593 -0.0022 27 1 -0.4851 0.8401 0.0004 28 1 3.8752 -0.6804 0.8888 29 1 3.8745 -0.6800 -0.8911 30 1 3.3696 -3.3125 -0.0021 31 1 5.4638 -4.7558 -0.8932 32 1 5.4640 -4.7565 0.8869 33 1 9.6954 -7.6804 -0.0108 34 1 12.7059 -8.0404 -0.0079 35 1 14.8138 -6.8024 -0.0081 36 1 14.8129 -4.3439 -0.0057 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000753516477.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:18 Heat of formation + Delta-G solvation = -111.075139 kcal Electronic energy + Delta-G solvation = -24641.784818 eV Core-core repulsion = 20504.120156 eV Total energy + Delta-G solvation = -4137.664662 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.060 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.80925 -41.75485 -40.46485 -39.20207 -37.84499 -37.54693 -36.24912 -34.49236 -33.97919 -31.76532 -31.31584 -30.79038 -28.93006 -26.00296 -24.14334 -24.00239 -22.96219 -22.12103 -21.79473 -19.95857 -19.31819 -18.81692 -18.38029 -18.24530 -17.71597 -17.37314 -17.27244 -16.93718 -16.24749 -16.21650 -15.87862 -15.57611 -14.97590 -14.72540 -14.56507 -14.42784 -14.29700 -14.13352 -13.97305 -13.82365 -13.24227 -13.11317 -12.73886 -12.72768 -12.43051 -12.34616 -12.08906 -12.07996 -11.95991 -11.68757 -11.26922 -11.04411 -10.94262 -10.08415 -9.93095 -9.41730 -8.41826 -6.49152 -0.86582 0.05322 0.38266 0.75806 0.97222 1.31430 1.34132 1.42081 1.44796 1.47189 1.52571 2.26191 2.35893 2.44412 2.93411 3.15421 3.38497 3.55525 3.65608 3.72389 3.97101 3.99356 4.10203 4.11582 4.22328 4.43326 4.71002 4.77743 4.86670 4.94022 4.97487 5.10441 5.21284 5.24267 5.35990 5.37778 5.71419 6.03405 6.24766 6.50416 6.67648 7.09149 7.24621 8.72544 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.018878 B = 0.002177 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.826374 B =12858.059829 C =14320.439578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.028 3.972 3 Si 0.935 3.065 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.261 1.261 7 C -0.547 4.547 8 H 0.064 0.936 9 C 0.232 3.768 10 N -0.694 5.694 11 C 0.503 3.497 12 O -0.580 6.580 13 C 0.057 3.943 14 O -0.341 6.341 15 C 0.554 3.446 16 O -0.486 6.486 17 C -0.042 4.042 18 C -0.062 4.062 19 C -0.150 4.150 20 C -0.038 4.038 21 C -0.119 4.119 22 C -0.054 4.054 23 C -0.062 4.062 24 Cl -0.069 7.069 25 C 0.054 3.946 26 O -0.192 6.192 27 H 0.273 0.727 28 H 0.016 0.984 29 H 0.015 0.985 30 H 0.415 0.585 31 H 0.135 0.865 32 H 0.135 0.865 33 H 0.209 0.791 34 H 0.178 0.822 35 H 0.187 0.813 36 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.792 -19.331 -0.032 37.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.173 4.173 3 Si 0.759 3.241 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.186 1.186 7 C -0.585 4.585 8 H 0.082 0.918 9 C 0.108 3.892 10 N -0.346 5.346 11 C 0.289 3.711 12 O -0.461 6.461 13 C -0.019 4.019 14 O -0.256 6.256 15 C 0.399 3.601 16 O -0.376 6.376 17 C -0.089 4.089 18 C -0.081 4.081 19 C -0.151 4.151 20 C -0.056 4.056 21 C -0.136 4.136 22 C -0.072 4.072 23 C -0.089 4.089 24 Cl -0.040 7.040 25 C 0.005 3.995 26 O -0.094 6.094 27 H 0.082 0.918 28 H 0.034 0.966 29 H 0.033 0.967 30 H 0.252 0.748 31 H 0.152 0.848 32 H 0.152 0.848 33 H 0.226 0.774 34 H 0.195 0.805 35 H 0.204 0.796 36 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 31.820 -18.386 -0.031 36.750 hybrid contribution -0.947 1.186 -0.010 1.518 sum 30.873 -17.200 -0.040 35.341 Atomic orbital electron populations 1.69969 1.07603 1.28648 1.50479 1.25568 0.95540 1.02578 0.93606 0.85895 0.79259 0.79513 0.79467 1.19005 1.19767 1.18563 1.21258 0.89653 0.94795 1.52812 0.91771 1.19178 0.93579 0.80317 0.96092 1.45821 1.05693 1.10412 1.72636 1.20584 0.82813 0.90995 0.76749 1.90709 1.56314 1.47659 1.51380 1.22938 0.76499 0.94293 1.08196 1.86704 1.23183 1.32258 1.83455 1.19391 0.85922 0.81607 0.73217 1.90944 1.64281 1.35586 1.46745 1.20643 0.87568 0.86600 1.14085 1.23194 0.89724 0.99100 0.96085 1.20101 0.95104 0.91043 1.08900 1.21011 0.88402 1.02488 0.93656 1.21330 1.00155 0.92303 0.99855 1.21511 0.95584 0.95423 0.94705 1.20161 0.91001 0.85207 1.12490 1.98409 1.98865 1.09627 1.97133 1.19848 0.82983 0.94187 1.02474 1.84187 1.14648 1.34324 1.76205 0.91783 0.96596 0.96707 0.74846 0.84755 0.84765 0.77401 0.80492 0.79619 0.80820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.17 13.96 21.45 0.30 -54.87 16 2 C 0.03 1.56 5.47 84.66 0.46 2.03 16 3 Si 0.93 44.17 27.47 68.60 1.88 46.05 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 5 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 6 H -0.26 -12.31 6.54 99.48 0.65 -11.66 16 7 C -0.55 -29.89 9.83 25.60 0.25 -29.64 16 8 H 0.06 3.64 7.84 -2.91 -0.02 3.62 16 9 C 0.23 11.31 4.50 85.63 0.38 11.70 16 10 N -0.69 -27.18 5.55 -466.79 -2.59 -29.77 16 11 C 0.50 19.15 7.91 87.66 0.69 19.84 16 12 O -0.58 -27.86 16.50 15.75 0.26 -27.60 16 13 C 0.06 1.57 5.96 71.24 0.42 1.99 16 14 O -0.34 -10.89 9.77 -50.54 -0.49 -11.38 16 15 C 0.55 15.00 7.94 70.06 0.56 15.56 16 16 O -0.49 -12.82 16.62 19.58 0.33 -12.50 16 17 C -0.04 -1.02 7.10 23.97 0.17 -0.85 16 18 C -0.06 -1.03 10.81 23.80 0.26 -0.78 16 19 C -0.15 -2.36 6.38 -20.24 -0.13 -2.49 16 20 C -0.04 -0.27 10.06 22.25 0.22 -0.05 16 21 C -0.12 -0.57 9.98 22.03 0.22 -0.35 16 22 C -0.05 -0.52 9.79 22.33 0.22 -0.30 16 23 C -0.06 -1.14 6.33 22.40 0.14 -1.00 16 24 Cl -0.07 -1.50 28.96 -2.72 -0.08 -1.58 16 25 C 0.05 1.21 7.20 23.09 0.17 1.37 16 26 O -0.19 -5.48 10.60 -12.57 -0.13 -5.61 16 27 H 0.27 15.13 8.31 -92.70 -0.77 14.36 16 28 H 0.02 0.83 7.20 -2.39 -0.02 0.81 16 29 H 0.02 0.76 7.57 -2.39 -0.02 0.74 16 30 H 0.41 13.59 8.32 -92.71 -0.77 12.82 16 31 H 0.13 2.91 8.14 -2.38 -0.02 2.89 16 32 H 0.13 2.91 8.14 -2.39 -0.02 2.89 16 33 H 0.21 2.06 8.06 -2.91 -0.02 2.03 16 34 H 0.18 -0.02 8.06 -2.91 -0.02 -0.05 16 35 H 0.19 -0.60 8.06 -2.91 -0.02 -0.62 16 36 H 0.17 0.73 8.06 -2.91 -0.02 0.70 16 Total: -1.00 -78.63 347.18 3.85 -74.79 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: 0.33 Total: 5.45 kcal Atomic # 6 Polarization: 12.99 SS G_CDS: 4.04 Total: 17.03 kcal Atomic # 7 Polarization: -82.36 SS G_CDS: -2.29 Total: -84.65 kcal Atomic # 8 Polarization: -57.05 SS G_CDS: -0.04 Total: -57.09 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.88 Total: 46.05 kcal Atomic # 17 Polarization: -1.50 SS G_CDS: -0.08 Total: -1.58 kcal Total: -78.63 3.85 -74.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753516477.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.289 kcal (2) G-P(sol) polarization free energy of solvation -78.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds