Wall clock time and date at job start Tue Mar 31 2020 19:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86790 * 120.00291 * 2 1 4 4 H 1.48503 * 109.47266 * 269.99854 * 3 2 1 5 5 H 1.48500 * 109.47253 * 29.99721 * 3 2 1 6 6 H 1.48494 * 109.47535 * 149.99915 * 3 2 1 7 7 C 1.37884 * 119.99565 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99832 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00204 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46857 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46965 * 179.97438 * 10 9 7 12 12 O 1.45206 * 109.47129 * 180.02562 * 11 10 9 13 13 C 1.34742 * 116.99990 * 180.02562 * 12 11 10 14 14 O 1.21499 * 119.99907 * 359.97438 * 13 12 11 15 15 C 1.47533 * 120.00328 * 180.02562 * 13 12 11 16 16 C 1.38060 * 119.46441 * 359.97438 * 15 13 12 17 17 C 1.41398 * 119.68796 * 179.97438 * 16 15 13 18 18 N 1.32480 * 130.83546 * 179.97438 * 17 16 15 19 19 S 1.55524 * 109.37885 * 180.02562 * 18 17 16 20 20 N 1.55509 * 100.22200 * 359.97438 * 19 18 17 21 21 C 1.32250 * 109.49275 * 0.02562 * 20 19 18 22 22 C 1.41967 * 130.71485 * 179.97438 * 21 20 19 23 23 N 1.48026 * 119.86210 * 0.02562 * 22 21 20 24 24 O 1.21802 * 119.99983 * 180.02562 * 23 22 21 25 25 O 1.21798 * 120.00638 * 359.97438 * 23 22 21 26 26 C 1.35076 * 120.26607 * 179.77765 * 22 21 20 27 27 H 0.97002 * 119.99803 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47103 * 59.99691 * 9 7 2 29 29 H 1.08992 * 109.47396 * 299.99843 * 9 7 2 30 30 H 1.09004 * 109.46976 * 60.00275 * 10 9 7 31 31 H 1.09004 * 109.47878 * 300.00144 * 10 9 7 32 32 H 1.09004 * 109.46930 * 60.00393 * 11 10 9 33 33 H 1.09000 * 109.47312 * 300.00337 * 11 10 9 34 34 H 1.07997 * 120.15089 * 359.96770 * 16 15 13 35 35 H 1.08001 * 119.28078 * 180.22849 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 8 2.4237 -6.0908 0.0018 13 6 1.9086 -7.3359 0.0019 14 8 0.7041 -7.4951 0.0019 15 6 2.8073 -8.5060 0.0031 16 6 4.1742 -8.3125 0.0035 17 6 5.0398 -9.4305 0.0052 18 7 6.3627 -9.5019 0.0055 19 16 6.7990 -10.9947 0.0070 20 7 5.4074 -11.6889 0.0081 21 6 4.4560 -10.7703 0.0068 22 6 3.0424 -10.9012 0.0066 23 7 2.4269 -12.2474 0.0085 24 8 1.2143 -12.3626 0.0079 25 8 3.1328 -13.2399 0.0098 26 6 2.2569 -9.8023 0.0096 27 1 -0.4850 0.8401 -0.0004 28 1 0.6246 -2.5571 -0.8897 29 1 0.6240 -2.5568 0.8902 30 1 2.8718 -3.6044 0.8906 31 1 2.8719 -3.6045 -0.8894 32 1 0.8532 -5.0451 -0.8887 33 1 0.8537 -5.0446 0.8914 34 1 4.5804 -7.3118 0.0025 35 1 1.1834 -9.9204 0.0132 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762975844.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:23 Heat of formation + Delta-G solvation = -13.023463 kcal Electronic energy + Delta-G solvation = -24860.388956 eV Core-core repulsion = 20761.312591 eV Total energy + Delta-G solvation = -4099.076365 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.061 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.65612 -41.59999 -40.49939 -37.57690 -36.74206 -36.47002 -34.90943 -34.12015 -32.20136 -31.63533 -29.09659 -27.45770 -26.59608 -24.77107 -23.23350 -22.67950 -21.66924 -20.59693 -20.30615 -19.24895 -19.01622 -18.06534 -17.88519 -17.65364 -17.03092 -16.74007 -16.49253 -16.48040 -15.99138 -14.70262 -14.53508 -14.34758 -13.78467 -13.27402 -12.97862 -12.72435 -12.57447 -12.29360 -12.24584 -12.10632 -12.01654 -11.82768 -11.66958 -11.36578 -11.33245 -11.05767 -10.95512 -10.78215 -10.62951 -10.58846 -9.87169 -9.77390 -9.68714 -9.62624 -9.25237 -8.45720 -6.10480 -4.13954 -1.43217 -0.07247 0.10479 0.48136 0.75481 0.96501 0.97400 1.85876 2.33552 2.70918 3.06767 3.26069 3.32811 3.35530 3.68819 3.74047 3.91952 3.98903 4.37225 4.47088 4.69969 4.83280 5.08830 5.12653 5.25695 5.40982 5.41088 5.59930 5.84043 6.03415 6.17133 6.39613 6.61910 6.84740 7.37185 7.47773 7.51500 7.61144 7.87098 8.27224 8.92160 9.50821 11.00865 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.019015 B = 0.002120 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.184116 B =13207.331328 C =14653.765173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.523 4.523 8 H 0.058 0.942 9 C 0.024 3.976 10 C -0.110 4.110 11 C 0.069 3.931 12 O -0.350 6.350 13 C 0.509 3.491 14 O -0.489 6.489 15 C -0.115 4.115 16 C 0.077 3.923 17 C 0.059 3.941 18 N -0.567 5.567 19 S 0.880 5.120 20 N -0.575 5.575 21 C 0.117 3.883 22 C -0.012 4.012 23 N 0.031 4.969 24 O -0.163 6.163 25 O -0.125 6.125 26 C 0.049 3.951 27 H 0.262 0.738 28 H 0.020 0.980 29 H 0.020 0.980 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.181 0.819 35 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.729 -23.972 0.021 27.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.562 4.562 8 H 0.076 0.924 9 C -0.013 4.013 10 C -0.147 4.147 11 C -0.003 4.003 12 O -0.266 6.266 13 C 0.352 3.648 14 O -0.378 6.378 15 C -0.123 4.123 16 C 0.051 3.949 17 C -0.099 4.099 18 N -0.420 5.420 19 S 0.925 5.075 20 N -0.425 5.425 21 C -0.042 4.042 22 C -0.102 4.102 23 N 0.552 4.448 24 O -0.374 6.374 25 O -0.347 6.347 26 C 0.024 3.976 27 H 0.072 0.928 28 H 0.038 0.962 29 H 0.039 0.961 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.198 0.802 35 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 15.542 -24.112 0.028 28.687 hybrid contribution -1.520 1.336 -0.011 2.024 sum 14.022 -22.775 0.017 26.746 Atomic orbital electron populations 1.69959 1.06091 1.26871 1.50310 1.25030 0.94887 0.99405 0.95121 0.86542 0.79789 0.83200 0.78164 1.20593 1.21161 1.19824 1.21145 0.93098 0.90620 1.51294 0.92423 1.19054 0.93807 0.90641 0.97806 1.21807 1.00062 0.90716 1.02146 1.23695 0.91052 0.82778 1.02793 1.86519 1.42750 1.14377 1.82979 1.20357 0.86617 0.83726 0.74131 1.90915 1.15376 1.86777 1.44694 1.18730 0.92376 0.91395 1.09790 1.21528 0.90134 0.98539 0.84705 1.20835 0.87729 0.94100 1.07210 1.72230 1.16178 1.29782 1.23825 1.78843 1.09966 0.82534 1.36157 1.72282 1.07255 1.37201 1.25751 1.20512 0.92724 0.88682 1.02310 1.19634 0.88160 0.84217 1.18216 1.43231 1.00965 1.02282 0.98277 1.94589 0.95893 1.92736 1.54179 1.94611 1.61544 1.26889 1.51675 1.20712 1.03331 0.88467 0.85093 0.92813 0.96150 0.96128 0.91970 0.91965 0.90895 0.90900 0.80153 0.79913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.03 13.29 55.43 0.74 -25.30 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.52 -14.11 9.11 -34.44 -0.31 -14.42 16 8 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 9 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 10 C -0.11 -2.04 5.53 -26.73 -0.15 -2.19 16 11 C 0.07 1.10 5.48 37.16 0.20 1.30 16 12 O -0.35 -4.68 9.38 -40.61 -0.38 -5.07 16 13 C 0.51 6.28 7.88 34.52 0.27 6.55 16 14 O -0.49 -7.32 16.06 -19.26 -0.31 -7.63 16 15 C -0.11 -1.07 5.85 -105.19 -0.62 -1.69 16 16 C 0.08 0.62 9.68 -38.45 -0.37 0.24 16 17 C 0.06 0.50 7.15 -83.21 -0.59 -0.09 16 18 N -0.57 -4.33 11.45 25.64 0.29 -4.03 16 19 S 0.88 4.52 23.60 -107.50 -2.54 1.98 16 20 N -0.57 -5.23 10.42 25.69 0.27 -4.96 16 21 C 0.12 1.15 6.85 -83.09 -0.57 0.59 16 22 C -0.01 -0.13 6.87 -79.64 -0.55 -0.68 16 23 N 0.03 0.39 4.45 34.11 0.15 0.54 16 24 O -0.16 -2.11 18.36 -29.46 -0.54 -2.66 16 25 O -0.12 -1.68 17.98 -29.46 -0.53 -2.21 16 26 C 0.05 0.46 8.97 -39.73 -0.36 0.11 16 27 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.18 1.21 7.52 -52.49 -0.39 0.82 16 35 H 0.18 1.66 7.00 -52.49 -0.37 1.29 16 LS Contribution 339.05 15.07 5.11 5.11 Total: -1.00 -32.77 339.05 -8.88 -41.65 By element: Atomic # 1 Polarization: -2.15 SS G_CDS: -2.84 Total: -4.99 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: -3.28 Total: -8.35 kcal Atomic # 7 Polarization: -35.20 SS G_CDS: 1.45 Total: -33.75 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: -1.76 Total: -17.56 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 4.52 SS G_CDS: -2.54 Total: 1.98 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.77 -8.88 -41.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762975844.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.623 kcal (2) G-P(sol) polarization free energy of solvation -32.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds