Wall clock time and date at job start Tue Mar 31 2020 20:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50703 * 120.00012 * 2 1 4 4 N 1.46499 * 109.46969 * 124.99833 * 3 2 1 5 5 C 1.34775 * 119.99925 * 179.97438 * 4 3 2 6 6 S 1.71196 * 120.00137 * 359.97438 * 5 4 3 7 7 N 1.34776 * 119.99889 * 180.02562 * 5 4 3 8 8 N 1.40096 * 120.00265 * 359.97438 * 7 5 4 9 9 C 1.34779 * 120.00359 * 180.28019 * 8 7 5 10 10 O 1.21612 * 119.99810 * 359.71967 * 9 8 7 11 11 C 1.47431 * 120.00262 * 179.72179 * 9 8 7 12 12 C 1.39672 * 120.21229 * 0.02562 * 11 9 8 13 13 C 1.37811 * 119.93703 * 179.97438 * 12 11 9 14 14 C 1.38655 * 120.37922 * 0.02562 * 13 12 11 15 15 C 1.37905 * 120.44127 * 359.97438 * 14 13 12 16 16 C 1.39118 * 120.04784 * 359.75261 * 15 14 13 17 17 S 1.76199 * 120.18848 * 180.27031 * 16 15 14 18 18 C 1.76197 * 100.00135 * 6.84044 * 17 16 15 19 19 H 1.08001 * 120.00043 * 5.65912 * 18 17 16 20 20 C 1.38805 * 120.00366 * 185.65121 * 18 17 16 21 21 N 1.31555 * 119.99552 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00517 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46603 * 60.00411 * 22 20 18 24 24 H 1.48500 * 109.47029 * 180.02562 * 22 20 18 25 25 H 1.48493 * 109.47047 * 300.00452 * 22 20 18 26 26 H 1.08001 * 119.99998 * 179.97438 * 1 2 3 27 27 H 1.08004 * 119.99880 * 359.97438 * 1 2 3 28 28 H 1.07998 * 119.99671 * 179.97438 * 2 1 3 29 29 H 1.08996 * 109.46825 * 5.00072 * 3 2 1 30 30 H 1.08998 * 109.46750 * 244.99992 * 3 2 1 31 31 H 0.96998 * 120.00063 * 0.02562 * 4 3 2 32 32 H 0.97005 * 119.99969 * 180.02562 * 7 5 4 33 33 H 0.97006 * 119.99883 * 359.97438 * 8 7 5 34 34 H 1.08003 * 120.03366 * 359.94792 * 12 11 9 35 35 H 1.07998 * 119.81030 * 179.97438 * 13 12 11 36 36 H 1.08004 * 119.78074 * 179.97438 * 14 13 12 37 37 H 1.08001 * 119.97609 * 180.02562 * 15 14 13 38 38 H 0.96998 * 120.00021 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 3.7790 2.4086 1.3329 6 16 3.6899 3.7447 0.2663 7 7 4.6352 2.4330 2.3735 8 7 4.7085 1.3394 3.2461 9 6 5.5606 1.3662 4.2900 10 8 6.2695 2.3375 4.4715 11 6 5.6334 0.2179 5.2118 12 6 4.8217 -0.9002 5.0072 13 6 4.8947 -1.9706 5.8721 14 6 5.7702 -1.9452 6.9470 15 6 6.5787 -0.8493 7.1638 16 6 6.5239 0.2389 6.2987 17 16 7.5604 1.6381 6.5681 18 6 8.5553 1.0319 7.8900 19 1 8.4576 0.0059 8.2128 20 6 9.4647 1.8729 8.5163 21 7 9.5835 3.1227 8.1233 22 14 10.5200 1.2301 9.9173 23 1 11.3520 0.0999 9.4319 24 1 11.4017 2.3177 10.4122 25 1 9.6447 0.7619 11.0217 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5400 0.9354 0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3586 2.1316 0.0896 30 1 2.6213 1.4026 -0.9314 31 1 3.0451 0.5744 1.7352 32 1 5.2001 3.2081 2.5187 33 1 4.1428 0.5648 3.1016 34 1 4.1371 -0.9257 4.1723 35 1 4.2658 -2.8340 5.7122 36 1 5.8192 -2.7892 7.6191 37 1 7.2582 -0.8376 8.0032 38 1 10.2187 3.7106 8.5612 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000768265628.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:24 Heat of formation + Delta-G solvation = 75.464871 kcal Electronic energy + Delta-G solvation = -23041.951384 eV Core-core repulsion = 19525.298127 eV Total energy + Delta-G solvation = -3516.653257 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 337.066 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.53341 -38.95933 -37.73718 -36.25447 -33.81458 -32.93704 -32.24507 -30.55616 -30.24579 -26.71114 -26.01704 -24.49201 -22.89858 -22.19595 -21.46751 -20.73334 -19.36597 -18.56055 -17.95483 -17.13024 -16.34392 -16.13051 -15.85586 -15.58162 -15.31087 -15.06395 -14.83894 -14.29274 -14.25507 -14.05961 -13.64289 -13.29562 -13.11797 -12.90091 -12.24842 -11.81842 -11.70367 -11.48353 -11.39589 -11.30248 -11.12596 -10.90280 -10.50825 -10.27578 -10.09810 -9.97142 -9.70312 -8.95698 -8.94688 -8.63820 -8.39355 -7.85228 -7.75788 -6.78164 -6.63476 -4.36552 1.04311 1.19895 1.28608 1.49462 1.76339 2.08373 2.65251 2.95357 3.03487 3.07024 3.09191 3.21890 3.89086 4.13777 4.17711 4.23394 4.56922 4.73568 4.78755 4.89089 5.05774 5.08635 5.26829 5.32349 5.37274 5.57600 5.72868 5.83864 5.99759 6.02779 6.10054 6.11229 6.29384 6.44707 6.57679 6.77460 6.89477 7.03149 7.18158 7.24932 7.36505 7.98038 8.21494 8.82525 10.39713 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.017037 B = 0.002772 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.045065 B =10099.115462 C =11684.938331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.188 4.188 3 C 0.153 3.847 4 N -0.686 5.686 5 C 0.563 3.437 6 S -0.618 6.618 7 N -0.458 5.458 8 N -0.558 5.558 9 C 0.559 3.441 10 O -0.492 6.492 11 C -0.178 4.178 12 C -0.060 4.060 13 C -0.183 4.183 14 C -0.071 4.071 15 C -0.148 4.148 16 C -0.056 4.056 17 S 0.201 5.799 18 C -0.599 4.599 19 H 0.093 0.907 20 C 0.085 3.915 21 N -0.853 5.853 22 Si 0.922 3.078 23 H -0.268 1.268 24 H -0.279 1.279 25 H -0.269 1.269 26 H 0.106 0.894 27 H 0.104 0.896 28 H 0.117 0.883 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.393 0.607 32 H 0.460 0.540 33 H 0.414 0.586 34 H 0.105 0.895 35 H 0.115 0.885 36 H 0.116 0.884 37 H 0.142 0.858 38 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.917 -11.136 -9.748 21.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.206 4.206 3 C 0.031 3.969 4 N -0.319 5.319 5 C 0.201 3.799 6 S -0.494 6.494 7 N -0.185 5.185 8 N -0.311 5.311 9 C 0.349 3.651 10 O -0.365 6.365 11 C -0.196 4.196 12 C -0.080 4.080 13 C -0.208 4.208 14 C -0.093 4.093 15 C -0.172 4.172 16 C -0.177 4.177 17 S 0.468 5.532 18 C -0.746 4.746 19 H 0.111 0.889 20 C -0.127 4.127 21 N -0.485 5.485 22 Si 0.747 3.253 23 H -0.193 1.193 24 H -0.204 1.204 25 H -0.193 1.193 26 H 0.124 0.876 27 H 0.122 0.878 28 H 0.135 0.865 29 H 0.111 0.889 30 H 0.115 0.885 31 H 0.230 0.770 32 H 0.311 0.689 33 H 0.256 0.744 34 H 0.123 0.877 35 H 0.133 0.867 36 H 0.134 0.866 37 H 0.160 0.840 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.043 -8.105 -10.643 19.395 hybrid contribution 0.527 -2.902 2.295 3.737 sum -13.516 -11.006 -8.348 19.327 Atomic orbital electron populations 1.24057 0.95680 1.02777 0.96650 1.23014 0.96388 0.97907 1.03308 1.20813 0.91314 0.96330 0.88471 1.44926 1.39226 1.16597 1.31133 1.22372 0.81159 0.90874 0.85503 1.93666 1.83798 1.26902 1.45063 1.44743 1.39109 1.14350 1.20329 1.45561 1.45950 1.13402 1.26226 1.18614 0.78993 0.88466 0.79030 1.90863 1.40667 1.33706 1.71310 1.18578 1.06358 0.95256 0.99393 1.20790 0.96523 0.92975 0.97738 1.20630 1.03134 0.99038 0.97973 1.21139 0.94555 0.97229 0.96426 1.21470 1.01591 0.93310 1.00872 1.23056 0.97985 1.01987 0.94648 1.84711 1.26238 1.08707 1.33541 1.24016 1.25911 1.01420 1.23226 0.88902 1.25139 0.96169 0.94270 0.97156 1.69947 1.33797 1.04994 1.39753 0.86147 0.79590 0.78923 0.80664 1.19328 1.20393 1.19348 0.87611 0.87794 0.86540 0.88912 0.88482 0.77001 0.68903 0.74381 0.87664 0.86724 0.86637 0.84026 0.91133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 14.32 29.01 0.42 -0.25 16 2 C -0.19 -0.92 9.63 -36.03 -0.35 -1.27 16 3 C 0.15 1.10 5.57 -5.19 -0.03 1.07 16 4 N -0.69 -5.60 5.51 -63.22 -0.35 -5.95 16 5 C 0.56 6.72 7.97 -86.92 -0.69 6.03 16 6 S -0.62 -9.69 29.32 -107.50 -3.15 -12.84 16 7 N -0.46 -5.81 6.26 29.96 0.19 -5.62 16 8 N -0.56 -6.74 6.21 30.44 0.19 -6.55 16 9 C 0.56 9.37 7.87 -12.52 -0.10 9.28 16 10 O -0.49 -10.24 13.61 5.27 0.07 -10.17 16 11 C -0.18 -3.03 5.89 -104.76 -0.62 -3.65 16 12 C -0.06 -0.77 9.53 -39.20 -0.37 -1.15 16 13 C -0.18 -2.34 10.02 -39.58 -0.40 -2.73 16 14 C -0.07 -1.04 10.02 -39.55 -0.40 -1.43 16 15 C -0.15 -2.74 9.22 -39.38 -0.36 -3.10 16 16 C -0.06 -1.14 6.14 -38.39 -0.24 -1.38 16 17 S 0.20 4.99 18.56 -107.50 -2.00 3.00 16 18 C -0.60 -15.48 9.00 30.94 0.28 -15.20 16 19 H 0.09 2.24 4.98 -52.49 -0.26 1.98 16 20 C 0.08 2.20 5.49 -17.46 -0.10 2.11 16 21 N -0.85 -23.51 13.22 55.49 0.73 -22.78 16 22 Si 0.92 19.63 29.55 -169.99 -5.02 14.61 16 23 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 24 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 25 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 26 H 0.11 0.33 8.06 -52.49 -0.42 -0.09 16 27 H 0.10 0.44 7.84 -52.48 -0.41 0.03 16 28 H 0.12 0.45 8.06 -52.49 -0.42 0.03 16 29 H 0.09 0.74 7.64 -51.93 -0.40 0.34 16 30 H 0.10 0.78 7.99 -51.93 -0.41 0.36 16 31 H 0.39 2.31 6.38 -40.82 -0.26 2.05 16 32 H 0.46 6.57 7.98 -182.60 -1.46 5.12 16 33 H 0.41 3.49 4.73 -182.60 -0.86 2.62 16 34 H 0.11 0.88 6.40 -52.48 -0.34 0.54 16 35 H 0.11 1.10 8.06 -52.49 -0.42 0.68 16 36 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 37 H 0.14 2.76 5.03 -52.49 -0.26 2.50 16 38 H 0.28 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 353.78 15.07 5.33 5.33 Total: -1.00 -32.12 353.78 -12.45 -44.57 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -5.49 Total: 8.08 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: -2.95 Total: -11.68 kcal Atomic # 7 Polarization: -41.66 SS G_CDS: 0.76 Total: -40.90 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.07 Total: -10.17 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.61 kcal Atomic # 16 Polarization: -4.69 SS G_CDS: -5.15 Total: -9.84 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.12 -12.45 -44.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768265628.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.038 kcal (2) G-P(sol) polarization free energy of solvation -32.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds