Wall clock time and date at job start Tue Mar 31 2020 20:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 N 1.39937 * 125.74970 * 2 1 4 4 C 1.30442 * 108.89295 * 179.77228 * 3 2 1 5 5 C 1.41291 * 108.02776 * 0.38423 * 4 3 2 6 6 C 1.47425 * 126.41772 * 179.87824 * 5 4 3 7 7 O 1.21603 * 120.00000 * 179.68747 * 6 5 4 8 8 N 1.34777 * 119.99743 * 359.68438 * 6 5 4 9 9 S 1.65602 * 119.99511 * 179.72170 * 8 6 5 10 10 O 1.42109 * 104.27511 * 181.34842 * 9 8 6 11 11 O 1.42098 * 104.28120 * 309.20840 * 9 8 6 12 12 C 1.81394 * 104.44973 * 65.28308 * 9 8 6 13 13 C 1.53003 * 109.47387 * 179.97438 * 12 9 8 14 14 C 1.50707 * 109.47138 * 179.97438 * 13 12 9 15 15 H 1.08001 * 119.99608 * 359.97438 * 14 13 12 16 16 C 1.37871 * 119.99869 * 179.97438 * 14 13 12 17 17 N 1.31520 * 119.99869 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00166 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47285 * 89.99841 * 18 16 14 20 20 H 1.48504 * 109.47506 * 210.00094 * 18 16 14 21 21 H 1.48502 * 109.47051 * 330.00121 * 18 16 14 22 22 C 1.34251 * 125.75827 * 180.02562 * 2 1 3 23 23 C 1.50707 * 126.28959 * 359.95310 * 22 2 1 24 24 F 1.39896 * 109.46684 * 120.02849 * 23 22 2 25 25 F 1.39893 * 109.47185 * 240.02569 * 23 22 2 26 26 H 1.09006 * 109.46811 * 269.97265 * 1 2 3 27 27 H 1.08993 * 109.47247 * 29.97886 * 1 2 3 28 28 H 1.09002 * 109.46953 * 149.98071 * 1 2 3 29 29 H 1.08008 * 125.98532 * 180.25904 * 4 3 2 30 30 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 31 31 H 1.09009 * 109.47044 * 299.99503 * 12 9 8 32 32 H 1.09001 * 109.47747 * 59.99183 * 12 9 8 33 33 H 1.09000 * 109.46375 * 299.99213 * 13 12 9 34 34 H 1.08993 * 109.47045 * 59.99537 * 13 12 9 35 35 H 0.97007 * 119.99442 * 180.02562 * 17 16 14 36 36 H 1.08995 * 109.46787 * 0.03017 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2826 1.1357 0.0000 4 6 3.5310 0.7574 0.0049 5 6 3.5599 -0.6552 -0.0007 6 6 4.7639 -1.5059 -0.0005 7 8 4.6527 -2.7169 0.0000 8 7 5.9878 -0.9415 -0.0009 9 16 7.3402 -1.8972 0.0063 10 8 8.4209 -0.9749 0.0363 11 8 7.1221 -2.8052 1.0773 12 6 7.2890 -2.7660 -1.5852 13 6 8.5020 -3.6915 -1.7004 14 6 8.4590 -4.4137 -3.0225 15 1 7.6475 -4.2312 -3.7113 16 6 9.4557 -5.3074 -3.3524 17 7 10.4441 -5.5292 -2.5136 18 14 9.4029 -6.2021 -4.9913 19 1 10.1230 -5.4029 -6.0150 20 1 10.0538 -7.5296 -4.8518 21 1 7.9900 -6.3851 -5.4101 22 6 2.2496 -1.0894 -0.0005 23 6 1.7851 -2.5231 -0.0001 24 9 2.2685 -3.1701 -1.1424 25 9 2.2690 -3.1698 1.1421 26 1 -0.3633 -0.0005 1.0277 27 1 -0.3633 0.8901 -0.5135 28 1 -0.3633 -0.8898 -0.5141 29 1 4.3918 1.4098 0.0101 30 1 6.0765 0.0244 -0.0010 31 1 6.3744 -3.3557 -1.6480 32 1 7.3088 -2.0389 -2.3970 33 1 9.4163 -3.1014 -1.6379 34 1 8.4825 -4.4186 -0.8887 35 1 11.1455 -6.1577 -2.7460 36 1 0.6955 -2.5520 0.0000 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776119484.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:42 Heat of formation + Delta-G solvation = -127.758881 kcal Electronic energy + Delta-G solvation = -27456.361784 eV Core-core repulsion = 22933.913683 eV Total energy + Delta-G solvation = -4522.448101 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.074 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.20674 -47.21458 -42.05001 -39.57442 -36.63987 -35.55579 -34.68585 -33.95327 -33.82214 -31.82030 -31.12173 -28.00921 -26.81174 -25.56920 -23.62251 -21.90565 -21.50375 -20.62167 -19.28161 -18.77504 -17.82583 -17.58806 -17.45687 -17.05495 -16.46481 -16.17024 -15.64956 -15.52562 -15.01202 -14.84683 -14.72032 -14.49831 -14.38095 -14.00533 -13.51691 -13.45960 -13.39657 -13.27766 -13.08363 -12.50350 -12.34782 -11.78802 -11.74591 -11.66099 -11.56118 -11.52122 -11.03703 -10.94395 -10.79527 -10.40241 -10.32340 -10.28321 -10.23404 -9.65742 -9.35425 -9.12295 -8.44841 -6.07205 -4.12176 0.53766 0.63886 1.53466 1.56805 2.72402 2.91398 3.02345 3.30739 3.36731 3.40566 3.52164 3.69808 4.03647 4.12383 4.31033 4.41525 4.42183 4.47489 4.58651 4.62843 4.73631 4.77711 4.91495 5.15077 5.28202 5.66102 5.72652 5.80601 5.95621 6.53104 6.66718 6.83538 7.34443 7.41375 7.53634 7.86317 8.22475 8.90817 9.52048 11.03973 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.015593 B = 0.003425 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.266666 B = 8174.171027 C = 9046.041595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.339 5.339 3 N -0.271 5.271 4 C 0.087 3.913 5 C -0.247 4.247 6 C 0.607 3.393 7 O -0.478 6.478 8 N -1.053 6.053 9 S 2.567 3.433 10 O -0.954 6.954 11 O -0.935 6.935 12 C -0.575 4.575 13 C 0.030 3.970 14 C -0.517 4.517 15 H 0.062 0.938 16 C 0.058 3.942 17 N -0.891 5.891 18 Si 0.901 3.099 19 H -0.279 1.279 20 H -0.284 1.284 21 H -0.272 1.272 22 C 0.067 3.933 23 C 0.347 3.653 24 F -0.171 7.171 25 F -0.171 7.171 26 H 0.089 0.911 27 H 0.104 0.896 28 H 0.094 0.906 29 H 0.203 0.797 30 H 0.425 0.575 31 H 0.133 0.867 32 H 0.121 0.879 33 H 0.034 0.966 34 H 0.036 0.964 35 H 0.265 0.735 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.216 14.286 4.903 27.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.119 5.119 3 N -0.091 5.091 4 C -0.100 4.100 5 C -0.264 4.264 6 C 0.393 3.607 7 O -0.349 6.349 8 N -0.813 5.813 9 S 2.668 3.332 10 O -0.945 6.945 11 O -0.925 6.925 12 C -0.710 4.710 13 C -0.010 4.010 14 C -0.557 4.557 15 H 0.081 0.919 16 C -0.145 4.145 17 N -0.529 5.529 18 Si 0.728 3.272 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.197 1.197 22 C -0.067 4.067 23 C 0.291 3.709 24 F -0.152 7.152 25 F -0.152 7.152 26 H 0.108 0.892 27 H 0.123 0.877 28 H 0.112 0.888 29 H 0.219 0.781 30 H 0.260 0.740 31 H 0.151 0.849 32 H 0.140 0.860 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.074 0.926 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -23.502 14.255 5.695 28.071 hybrid contribution 0.386 -0.601 -1.413 1.583 sum -23.115 13.654 4.282 27.186 Atomic orbital electron populations 1.22216 0.72694 1.05779 1.04772 1.48352 1.07418 1.02648 1.53466 1.77297 1.01877 1.06376 1.23508 1.24195 0.95715 0.93300 0.96751 1.20076 0.92305 0.94055 1.19999 1.17010 0.82207 0.87203 0.74253 1.91053 1.86044 1.12745 1.45033 1.55244 1.22054 1.22833 1.81214 1.06692 0.72209 0.74795 0.79551 1.93590 1.50117 1.62555 1.88202 1.93604 1.83327 1.64087 1.51482 1.30338 1.11693 1.12442 1.16487 1.18994 0.88559 0.93343 1.00077 1.20989 1.09064 1.24127 1.01515 0.91942 1.25060 0.95277 0.96664 0.97491 1.69963 1.11756 1.35439 1.35758 0.86450 0.78311 0.79036 0.83380 1.20511 1.21017 1.19708 1.22020 0.91685 0.91245 1.01739 1.19451 0.96481 0.81351 0.73613 1.93136 1.90461 1.81804 1.49798 1.93135 1.90432 1.81797 1.49805 0.89206 0.87727 0.88754 0.78055 0.73986 0.84881 0.86026 0.94772 0.94529 0.92559 0.86259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.23 11.11 59.85 0.66 0.89 16 2 N -0.34 -2.66 3.98 -63.33 -0.25 -2.92 16 3 N -0.27 -2.50 12.50 30.86 0.39 -2.12 16 4 C 0.09 0.77 11.50 -16.98 -0.20 0.58 16 5 C -0.25 -2.89 6.13 -105.07 -0.64 -3.54 16 6 C 0.61 9.05 7.55 -12.52 -0.09 8.95 16 7 O -0.48 -8.90 12.11 -11.94 -0.14 -9.05 16 8 N -1.05 -14.26 5.60 30.43 0.17 -14.09 16 9 S 2.57 48.13 5.11 -107.50 -0.55 47.58 16 10 O -0.95 -19.12 18.08 -57.54 -1.04 -20.16 16 11 O -0.93 -21.07 17.03 -64.81 -1.10 -22.18 16 12 C -0.57 -11.77 5.83 37.16 0.22 -11.55 16 13 C 0.03 0.78 4.98 -27.88 -0.14 0.64 16 14 C -0.52 -14.71 9.11 -34.44 -0.31 -15.02 16 15 H 0.06 1.69 7.74 -52.49 -0.41 1.28 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -26.93 13.29 55.43 0.74 -26.20 16 18 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 22 C 0.07 0.69 6.44 -81.60 -0.53 0.16 16 23 C 0.35 3.38 4.95 36.01 0.18 3.56 16 24 F -0.17 -2.21 16.23 2.25 0.04 -2.18 16 25 F -0.17 -2.23 16.23 2.25 0.04 -2.19 16 26 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 27 H 0.10 0.18 8.14 -51.93 -0.42 -0.24 16 28 H 0.09 0.03 7.02 -51.93 -0.36 -0.34 16 29 H 0.20 0.99 7.50 -52.48 -0.39 0.60 16 30 H 0.43 3.80 7.74 -34.47 -0.27 3.53 16 31 H 0.13 2.71 7.20 -51.92 -0.37 2.34 16 32 H 0.12 2.14 8.14 -51.92 -0.42 1.72 16 33 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 36 H 0.12 0.48 6.72 -51.93 -0.35 0.13 16 LS Contribution 337.01 15.07 5.08 5.08 Total: -1.00 -41.09 337.01 -6.02 -47.11 By element: Atomic # 1 Polarization: 1.82 SS G_CDS: -3.40 Total: -1.58 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: -0.95 Total: -13.77 kcal Atomic # 7 Polarization: -46.36 SS G_CDS: 1.04 Total: -45.32 kcal Atomic # 8 Polarization: -49.09 SS G_CDS: -2.29 Total: -51.38 kcal Atomic # 9 Polarization: -4.44 SS G_CDS: 0.07 Total: -4.37 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: 48.13 SS G_CDS: -0.55 Total: 47.58 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -41.09 -6.02 -47.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776119484.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.652 kcal (2) G-P(sol) polarization free energy of solvation -41.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds