Wall clock time and date at job start Tue Mar 31 2020 20:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 N 1.39937 * 125.74970 * 2 1 4 4 C 1.30442 * 108.89295 * 179.77228 * 3 2 1 5 5 C 1.41291 * 108.02776 * 0.38423 * 4 3 2 6 6 C 1.47425 * 126.41772 * 179.87824 * 5 4 3 7 7 O 1.21603 * 120.00000 * 179.68747 * 6 5 4 8 8 N 1.34777 * 119.99743 * 359.68438 * 6 5 4 9 9 S 1.65602 * 119.99511 * 179.72170 * 8 6 5 10 10 O 1.42109 * 104.27511 * 181.34842 * 9 8 6 11 11 O 1.42098 * 104.28120 * 309.20840 * 9 8 6 12 12 C 1.81394 * 104.44973 * 65.28308 * 9 8 6 13 13 C 1.53003 * 109.47387 * 179.97438 * 12 9 8 14 14 C 1.50707 * 109.47138 * 179.97438 * 13 12 9 15 15 H 1.08001 * 119.99608 * 359.97438 * 14 13 12 16 16 C 1.37871 * 119.99869 * 179.97438 * 14 13 12 17 17 N 1.31520 * 119.99869 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 120.00166 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47285 * 89.99841 * 18 16 14 20 20 H 1.48504 * 109.47506 * 210.00094 * 18 16 14 21 21 H 1.48502 * 109.47051 * 330.00121 * 18 16 14 22 22 C 1.34251 * 125.75827 * 180.02562 * 2 1 3 23 23 C 1.50707 * 126.28959 * 359.95310 * 22 2 1 24 24 F 1.39896 * 109.46684 * 120.02849 * 23 22 2 25 25 F 1.39893 * 109.47185 * 240.02569 * 23 22 2 26 26 H 1.09006 * 109.46811 * 269.97265 * 1 2 3 27 27 H 1.08993 * 109.47247 * 29.97886 * 1 2 3 28 28 H 1.09002 * 109.46953 * 149.98071 * 1 2 3 29 29 H 1.08008 * 125.98532 * 180.25904 * 4 3 2 30 30 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 31 31 H 1.09009 * 109.47044 * 299.99503 * 12 9 8 32 32 H 1.09001 * 109.47747 * 59.99183 * 12 9 8 33 33 H 1.09000 * 109.46375 * 299.99213 * 13 12 9 34 34 H 1.08993 * 109.47045 * 59.99537 * 13 12 9 35 35 H 0.97007 * 119.99442 * 180.02562 * 17 16 14 36 36 H 1.08995 * 109.46787 * 0.03017 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2826 1.1357 0.0000 4 6 3.5310 0.7574 0.0049 5 6 3.5599 -0.6552 -0.0007 6 6 4.7639 -1.5059 -0.0005 7 8 4.6527 -2.7169 0.0000 8 7 5.9878 -0.9415 -0.0009 9 16 7.3402 -1.8972 0.0063 10 8 8.4209 -0.9749 0.0363 11 8 7.1221 -2.8052 1.0773 12 6 7.2890 -2.7660 -1.5852 13 6 8.5020 -3.6915 -1.7004 14 6 8.4590 -4.4137 -3.0225 15 1 7.6475 -4.2312 -3.7113 16 6 9.4557 -5.3074 -3.3524 17 7 10.4441 -5.5292 -2.5136 18 14 9.4029 -6.2021 -4.9913 19 1 10.1230 -5.4029 -6.0150 20 1 10.0538 -7.5296 -4.8518 21 1 7.9900 -6.3851 -5.4101 22 6 2.2496 -1.0894 -0.0005 23 6 1.7851 -2.5231 -0.0001 24 9 2.2685 -3.1701 -1.1424 25 9 2.2690 -3.1698 1.1421 26 1 -0.3633 -0.0005 1.0277 27 1 -0.3633 0.8901 -0.5135 28 1 -0.3633 -0.8898 -0.5141 29 1 4.3918 1.4098 0.0101 30 1 6.0765 0.0244 -0.0010 31 1 6.3744 -3.3557 -1.6480 32 1 7.3088 -2.0389 -2.3970 33 1 9.4163 -3.1014 -1.6379 34 1 8.4825 -4.4186 -0.8887 35 1 11.1455 -6.1577 -2.7460 36 1 0.6955 -2.5520 0.0000 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776119484.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:41 Heat of formation + Delta-G solvation = -161.159706 kcal Electronic energy + Delta-G solvation = -27457.810152 eV Core-core repulsion = 22933.913683 eV Total energy + Delta-G solvation = -4523.896470 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.074 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.04589 -48.08705 -42.76303 -40.74349 -38.28077 -37.22490 -35.96421 -35.73880 -34.63722 -33.16939 -32.53848 -28.61217 -27.62844 -27.43079 -24.60548 -23.61369 -22.51758 -21.49837 -20.62526 -19.74140 -19.16771 -18.57973 -18.40743 -18.27960 -17.90149 -17.35217 -16.76969 -16.72190 -16.54123 -16.20616 -15.92792 -15.72251 -15.19045 -15.07626 -14.90286 -14.48367 -14.40924 -14.01192 -13.85274 -13.75724 -13.67846 -13.61191 -13.36430 -13.25092 -12.93824 -12.83839 -12.55772 -12.31197 -12.26108 -12.22596 -12.01566 -11.73920 -11.45555 -11.06826 -10.90195 -10.64192 -10.08266 -8.26151 -6.40065 -1.00845 -0.18439 0.78647 0.97342 1.40571 1.40652 1.43306 1.54631 1.87994 2.37936 2.40076 2.57489 2.91488 3.01354 3.07168 3.19630 3.34987 3.50289 3.78716 3.79128 4.01472 4.02956 4.06256 4.21818 4.35885 4.46094 4.65625 4.70669 5.07888 5.23770 5.25209 5.41398 5.65844 5.68046 6.05214 6.16009 6.43407 6.72188 7.29600 8.86360 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.015593 B = 0.003425 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.266666 B = 8174.171027 C = 9046.041595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.324 5.324 3 N -0.285 5.285 4 C 0.096 3.904 5 C -0.281 4.281 6 C 0.606 3.394 7 O -0.521 6.521 8 N -1.032 6.032 9 S 2.604 3.396 10 O -0.966 6.966 11 O -0.975 6.975 12 C -0.578 4.578 13 C 0.023 3.977 14 C -0.541 4.541 15 H 0.073 0.927 16 C -0.003 4.003 17 N -0.933 5.933 18 Si 0.976 3.024 19 H -0.266 1.266 20 H -0.281 1.281 21 H -0.261 1.261 22 C 0.067 3.933 23 C 0.334 3.666 24 F -0.194 7.194 25 F -0.195 7.195 26 H 0.109 0.891 27 H 0.116 0.884 28 H 0.123 0.877 29 H 0.235 0.765 30 H 0.448 0.552 31 H 0.133 0.867 32 H 0.152 0.848 33 H 0.017 0.983 34 H 0.005 0.995 35 H 0.268 0.732 36 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.844 15.927 3.734 30.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.102 5.102 3 N -0.105 5.105 4 C -0.090 4.090 5 C -0.299 4.299 6 C 0.395 3.605 7 O -0.395 6.395 8 N -0.798 5.798 9 S 2.702 3.298 10 O -0.957 6.957 11 O -0.965 6.965 12 C -0.711 4.711 13 C -0.016 4.016 14 C -0.580 4.580 15 H 0.091 0.909 16 C -0.201 4.201 17 N -0.572 5.572 18 Si 0.799 3.201 19 H -0.191 1.191 20 H -0.207 1.207 21 H -0.185 1.185 22 C -0.070 4.070 23 C 0.279 3.721 24 F -0.175 7.175 25 F -0.176 7.176 26 H 0.127 0.873 27 H 0.135 0.865 28 H 0.141 0.859 29 H 0.251 0.749 30 H 0.288 0.712 31 H 0.151 0.849 32 H 0.170 0.830 33 H 0.035 0.965 34 H 0.023 0.977 35 H 0.077 0.923 36 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -26.150 15.956 4.514 30.964 hybrid contribution 1.047 -1.000 -0.988 1.753 sum -25.103 14.956 3.526 29.432 Atomic orbital electron populations 1.22787 0.69638 1.07891 1.06721 1.48786 1.08958 1.01474 1.50980 1.77297 1.02112 1.07031 1.24021 1.24686 0.96726 0.92321 0.95299 1.19933 0.91508 0.94997 1.23420 1.17516 0.82983 0.87067 0.72980 1.91034 1.86438 1.14790 1.47287 1.54617 1.20494 1.23788 1.80864 1.05298 0.72448 0.74155 0.77866 1.93566 1.51584 1.62542 1.87970 1.93553 1.84340 1.65936 1.52721 1.30235 1.08809 1.12516 1.19530 1.18833 0.90521 0.93615 0.98618 1.21471 1.09460 1.24566 1.02458 0.90910 1.26112 0.94733 0.97555 1.01716 1.70102 1.12664 1.36330 1.38098 0.85287 0.78898 0.77595 0.78321 1.19147 1.20665 1.18547 1.22132 0.91752 0.92061 1.01047 1.20272 0.99425 0.80521 0.71896 1.93081 1.91080 1.82293 1.51026 1.93078 1.91064 1.82314 1.51131 0.87260 0.86515 0.85895 0.74886 0.71222 0.84910 0.83027 0.96465 0.97660 0.92286 0.79966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.09 11.11 127.77 1.42 1.51 16 2 N -0.32 -4.08 3.98 -354.29 -1.41 -5.49 16 3 N -0.28 -4.45 12.50 -56.27 -0.70 -5.16 16 4 C 0.10 1.46 11.50 85.65 0.99 2.44 16 5 C -0.28 -6.18 6.13 -20.15 -0.12 -6.30 16 6 C 0.61 17.86 7.55 86.66 0.65 18.51 16 7 O -0.52 -19.88 12.11 12.42 0.15 -19.73 16 8 N -1.03 -27.18 5.60 -175.89 -0.98 -28.17 16 9 S 2.60 99.00 5.11 -56.49 -0.29 98.71 16 10 O -0.97 -38.67 18.08 -127.65 -2.31 -40.97 16 11 O -0.98 -45.52 17.03 -120.69 -2.06 -47.58 16 12 C -0.58 -24.10 5.83 71.98 0.42 -23.68 16 13 C 0.02 1.27 4.98 29.85 0.15 1.42 16 14 C -0.54 -31.29 9.11 25.60 0.23 -31.06 16 15 H 0.07 3.94 7.74 -2.91 -0.02 3.92 16 16 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 17 N -0.93 -57.91 13.29 21.45 0.28 -57.62 16 18 Si 0.98 44.59 29.54 68.60 2.03 46.62 16 19 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 20 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 21 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 22 C 0.07 1.23 6.44 42.14 0.27 1.50 16 23 C 0.33 5.94 4.95 71.24 0.35 6.29 16 24 F -0.19 -4.91 16.23 44.97 0.73 -4.18 16 25 F -0.19 -5.04 16.23 44.97 0.73 -4.31 16 26 H 0.11 -0.19 8.14 -2.38 -0.02 -0.21 16 27 H 0.12 -0.05 8.14 -2.39 -0.02 -0.07 16 28 H 0.12 -0.52 7.02 -2.39 -0.02 -0.54 16 29 H 0.24 1.55 7.50 -2.91 -0.02 1.52 16 30 H 0.45 7.19 7.74 -96.74 -0.75 6.44 16 31 H 0.13 5.56 7.20 -2.39 -0.02 5.54 16 32 H 0.15 5.26 8.14 -2.39 -0.02 5.24 16 33 H 0.02 0.97 8.14 -2.39 -0.02 0.96 16 34 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 35 H 0.27 15.51 8.31 -92.70 -0.77 14.74 16 36 H 0.18 0.77 6.72 -2.39 -0.02 0.76 16 Total: -1.00 -93.18 337.01 1.41 -91.77 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: 0.41 Total: 5.16 kcal Atomic # 6 Polarization: -33.87 SS G_CDS: 4.82 Total: -29.05 kcal Atomic # 7 Polarization: -93.63 SS G_CDS: -2.81 Total: -96.44 kcal Atomic # 8 Polarization: -104.07 SS G_CDS: -4.21 Total: -108.28 kcal Atomic # 9 Polarization: -9.94 SS G_CDS: 1.46 Total: -8.48 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Atomic # 16 Polarization: 99.00 SS G_CDS: -0.29 Total: 98.71 kcal Total: -93.18 1.41 -91.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776119484.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.386 kcal (2) G-P(sol) polarization free energy of solvation -93.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds