Wall clock time and date at job start Tue Mar 31 2020 19:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31305 * 1 3 3 Si 1.86790 * 119.99894 * 2 1 4 4 H 1.48504 * 109.47158 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47620 * 300.00006 * 3 2 1 6 6 H 1.48501 * 109.47386 * 60.00093 * 3 2 1 7 7 C 1.38983 * 119.99794 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99450 * 179.97438 * 7 2 1 9 9 N 1.37307 * 119.99853 * 0.02562 * 7 2 1 10 10 C 1.36611 * 126.07486 * 179.97438 * 9 7 2 11 11 C 1.35633 * 107.50110 * 180.02562 * 10 9 7 12 12 N 1.40576 * 126.07288 * 179.97438 * 11 10 9 13 13 S 1.65596 * 120.00387 * 134.99824 * 12 11 10 14 14 O 1.42106 * 106.39787 * 311.45933 * 13 12 11 15 15 O 1.42091 * 106.40383 * 178.53812 * 13 12 11 16 16 C 1.76198 * 107.21922 * 64.99440 * 13 12 11 17 17 C 1.38247 * 119.92916 * 270.02271 * 16 13 12 18 18 C 1.38240 * 120.14459 * 179.74977 * 17 16 13 19 19 C 1.38552 * 120.02633 * 0.42901 * 18 17 16 20 20 C 1.39265 * 119.82706 * 359.57585 * 19 18 17 21 21 C 1.38231 * 119.92687 * 90.00462 * 16 13 12 22 22 O 1.36496 * 108.64230 * 180.24572 * 20 19 18 23 23 C 1.43981 * 105.48444 * 342.72036 * 22 20 19 24 24 O 1.36505 * 131.53353 * 179.87931 * 19 18 17 25 25 C 1.40653 * 107.85475 * 0.22377 * 11 10 9 26 26 N 1.30940 * 108.39860 * 359.62058 * 25 11 10 27 27 H 0.97001 * 120.00263 * 359.97438 * 1 2 3 28 28 H 1.07999 * 126.24182 * 0.07158 * 10 9 7 29 29 H 0.97005 * 119.99609 * 314.99494 * 12 11 10 30 30 H 1.07994 * 119.93290 * 0.02562 * 17 16 13 31 31 H 1.07997 * 119.99327 * 180.33354 * 18 17 16 32 32 H 1.08003 * 119.98943 * 0.02562 * 21 16 13 33 33 H 1.09007 * 110.56955 * 268.54960 * 23 22 20 34 34 H 1.09003 * 110.57719 * 145.67764 * 23 22 20 35 35 H 1.07995 * 125.80070 * 179.77766 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 3.7070 1.3463 -0.0006 5 1 1.8883 2.3965 -1.2125 6 1 1.8883 2.3964 1.2125 7 6 2.0079 -1.2036 -0.0005 8 1 3.0879 -1.2036 -0.0010 9 7 1.3213 -2.3927 -0.0016 10 6 1.8752 -3.6415 -0.0027 11 6 0.8582 -4.5388 -0.0041 12 7 0.9893 -5.9385 -0.0061 13 16 0.0568 -6.8589 1.0066 14 8 0.1594 -6.2675 2.2947 15 8 0.3961 -8.2135 0.7440 16 6 -1.6186 -6.6583 0.4992 17 6 -2.3877 -5.6467 1.0435 18 6 -3.7011 -5.4820 0.6449 19 6 -4.2526 -6.3370 -0.2957 20 6 -3.4777 -7.3561 -0.8440 21 6 -2.1609 -7.5125 -0.4426 22 8 -4.2393 -8.0493 -1.7399 23 6 -5.6030 -7.7027 -1.4346 24 8 -5.4997 -6.3918 -0.8480 25 6 -0.3509 -3.8203 -0.0090 26 7 -0.0715 -2.5411 -0.0024 27 1 -0.4850 0.8400 0.0004 28 1 2.9304 -3.8719 -0.0018 29 1 1.6260 -6.3651 -0.6007 30 1 -1.9604 -4.9809 1.7786 31 1 -4.2981 -4.6876 1.0677 32 1 -1.5578 -8.3020 -0.8662 33 1 -6.0271 -8.4093 -0.7210 34 1 -6.2026 -7.6690 -2.3442 35 1 -1.3414 -4.2505 -0.0146 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777931520.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:04 Heat of formation + Delta-G solvation = -10.697920 kcal Electronic energy + Delta-G solvation = -26578.465526 eV Core-core repulsion = 22479.490004 eV Total energy + Delta-G solvation = -4098.975522 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.061 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.40577 -39.65017 -38.06797 -36.94266 -36.53495 -35.56772 -34.59322 -33.07995 -30.96642 -30.60906 -30.11854 -27.47514 -26.18169 -24.88619 -23.47371 -23.22112 -20.87114 -20.11209 -19.52235 -18.47084 -18.15628 -17.66266 -17.53742 -16.93166 -16.88292 -15.78204 -15.58165 -15.38737 -14.82587 -14.68364 -14.17856 -14.07558 -13.88702 -13.51750 -13.45968 -13.26408 -13.18074 -12.86468 -12.17039 -11.94841 -11.80920 -11.76872 -11.63882 -11.56138 -11.34058 -11.27085 -10.96339 -10.81498 -10.55394 -10.18701 -9.42322 -9.17524 -8.92805 -8.40456 -8.24571 -7.07801 -6.64997 -4.35813 0.45239 0.78711 1.03547 2.45671 2.90150 3.01951 3.07906 3.10056 3.17254 3.36597 3.49783 3.78400 3.92486 4.09769 4.21689 4.36888 4.55326 4.61129 4.63801 4.93780 4.94828 5.01902 5.04591 5.34704 5.60261 5.79109 5.90673 5.92138 5.98228 6.18387 6.25338 6.30747 6.71670 6.86438 7.04917 7.19460 7.49590 7.75064 8.06366 8.56399 9.24265 9.47240 10.31116 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.014677 B = 0.003691 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.311089 B = 7585.178001 C = 8962.598818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.047 3.953 3 Si 0.936 3.064 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.321 4.321 8 H 0.120 0.880 9 N -0.140 5.140 10 C -0.056 4.056 11 C -0.051 4.051 12 N -1.016 6.016 13 S 2.705 3.295 14 O -0.944 6.944 15 O -0.970 6.970 16 C -0.667 4.667 17 C 0.004 3.996 18 C -0.121 4.121 19 C 0.088 3.912 20 C 0.003 3.997 21 C 0.002 3.998 22 O -0.306 6.306 23 C 0.211 3.789 24 O -0.305 6.305 25 C -0.072 4.072 26 N -0.245 5.245 27 H 0.275 0.725 28 H 0.151 0.849 29 H 0.412 0.588 30 H 0.164 0.836 31 H 0.148 0.852 32 H 0.152 0.848 33 H 0.086 0.914 34 H 0.133 0.867 35 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.919 -11.330 -1.586 13.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.170 4.170 3 Si 0.760 3.240 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.198 1.198 7 C -0.454 4.454 8 H 0.137 0.863 9 N 0.093 4.907 10 C -0.208 4.208 11 C -0.159 4.159 12 N -0.771 5.771 13 S 2.793 3.207 14 O -0.934 6.934 15 O -0.960 6.960 16 C -0.752 4.752 17 C -0.015 4.015 18 C -0.141 4.141 19 C 0.042 3.958 20 C -0.042 4.042 21 C -0.018 4.018 22 O -0.222 6.222 23 C 0.099 3.901 24 O -0.220 6.220 25 C -0.249 4.249 26 N -0.075 5.075 27 H 0.086 0.914 28 H 0.168 0.832 29 H 0.247 0.753 30 H 0.181 0.819 31 H 0.166 0.834 32 H 0.169 0.831 33 H 0.104 0.896 34 H 0.151 0.849 35 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -7.597 -10.437 -0.974 12.946 hybrid contribution 0.043 -0.132 -0.987 0.996 sum -7.554 -10.569 -1.960 13.138 Atomic orbital electron populations 1.70200 1.06155 1.28073 1.35276 1.25646 0.95738 1.00356 0.95281 0.85737 0.79717 0.80072 0.78499 1.18602 1.19924 1.19838 1.19995 0.91845 0.80382 1.53178 0.86256 1.44605 1.03770 1.03649 1.38724 1.21650 0.97631 0.85001 1.16489 1.16684 0.93532 0.80683 1.24983 1.52104 1.53932 1.13373 1.57678 1.01683 0.73097 0.72258 0.73686 1.93598 1.85303 1.77794 1.36723 1.93556 1.83095 1.33564 1.85781 1.30981 1.26557 1.06287 1.11393 1.20915 0.91664 0.93295 0.95609 1.20257 0.95928 1.00755 0.97120 1.20096 0.84535 0.96282 0.94867 1.19716 0.94819 0.95261 0.94411 1.19647 0.91443 0.97513 0.93215 1.87380 1.17043 1.66090 1.51686 1.25697 0.84047 0.81144 0.99167 1.87406 1.30448 1.34645 1.69513 1.23920 0.96834 0.92642 1.11498 1.78211 0.90701 1.13978 1.24657 0.91411 0.83155 0.75283 0.81862 0.83395 0.83083 0.89625 0.84912 0.82604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -20.39 11.81 55.49 0.66 -19.74 16 2 C 0.05 1.16 5.50 -17.50 -0.10 1.06 16 3 Si 0.94 18.21 29.55 -169.99 -5.02 13.18 16 4 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 5 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 6 H -0.27 -5.30 7.11 56.52 0.40 -4.89 16 7 C -0.32 -8.12 10.25 -14.82 -0.15 -8.27 16 8 H 0.12 2.70 7.83 -52.49 -0.41 2.29 16 9 N -0.14 -3.63 3.74 -11.40 -0.04 -3.67 16 10 C -0.06 -1.26 11.50 -16.35 -0.19 -1.44 16 11 C -0.05 -1.08 6.41 -83.86 -0.54 -1.62 16 12 N -1.02 -17.04 5.93 32.32 0.19 -16.85 16 13 S 2.71 44.41 5.61 -107.50 -0.60 43.81 16 14 O -0.94 -18.42 17.00 -57.17 -0.97 -19.39 16 15 O -0.97 -16.32 17.27 -57.17 -0.99 -17.30 16 16 C -0.67 -10.15 5.23 -39.58 -0.21 -10.36 16 17 C 0.00 0.06 6.33 -39.58 -0.25 -0.19 16 18 C -0.12 -1.67 10.06 -39.46 -0.40 -2.06 16 19 C 0.09 1.22 7.15 -39.08 -0.28 0.94 16 20 C 0.00 0.04 7.15 -39.08 -0.28 -0.24 16 21 C 0.00 0.02 9.53 -39.47 -0.38 -0.35 16 22 O -0.31 -3.83 11.40 -45.68 -0.52 -4.35 16 23 C 0.21 1.91 8.89 101.05 0.90 2.81 16 24 O -0.30 -3.79 11.40 -45.70 -0.52 -4.31 16 25 C -0.07 -1.66 10.70 -17.02 -0.18 -1.84 16 26 N -0.24 -6.52 10.40 30.81 0.32 -6.20 16 27 H 0.28 6.65 8.31 -40.82 -0.34 6.31 16 28 H 0.15 2.88 8.06 -52.49 -0.42 2.46 16 29 H 0.41 5.65 8.96 -34.47 -0.31 5.34 16 30 H 0.16 2.49 7.16 -52.49 -0.38 2.11 16 31 H 0.15 1.71 8.06 -52.49 -0.42 1.29 16 32 H 0.15 1.87 7.61 -52.48 -0.40 1.47 16 33 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.13 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.16 3.12 4.21 -52.49 -0.22 2.90 16 LS Contribution 320.62 15.07 4.83 4.83 Total: -1.00 -33.88 320.62 -7.26 -41.14 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -2.54 Total: 10.41 kcal Atomic # 6 Polarization: -19.51 SS G_CDS: -2.05 Total: -21.56 kcal Atomic # 7 Polarization: -47.58 SS G_CDS: 1.13 Total: -46.46 kcal Atomic # 8 Polarization: -42.36 SS G_CDS: -3.00 Total: -45.36 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -5.02 Total: 13.18 kcal Atomic # 16 Polarization: 44.41 SS G_CDS: -0.60 Total: 43.81 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.88 -7.26 -41.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777931520.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.439 kcal (2) G-P(sol) polarization free energy of solvation -33.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds