Wall clock time and date at job start Tue Mar 31 2020 19:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31305 * 1 3 3 Si 1.86790 * 119.99894 * 2 1 4 4 H 1.48504 * 109.47158 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47620 * 300.00006 * 3 2 1 6 6 H 1.48501 * 109.47386 * 60.00093 * 3 2 1 7 7 C 1.38983 * 119.99794 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99450 * 179.97438 * 7 2 1 9 9 N 1.37307 * 119.99853 * 0.02562 * 7 2 1 10 10 C 1.36611 * 126.07486 * 179.97438 * 9 7 2 11 11 C 1.35633 * 107.50110 * 180.02562 * 10 9 7 12 12 N 1.40576 * 126.07288 * 179.97438 * 11 10 9 13 13 S 1.65596 * 120.00387 * 134.99824 * 12 11 10 14 14 O 1.42106 * 106.39787 * 311.45933 * 13 12 11 15 15 O 1.42091 * 106.40383 * 178.53812 * 13 12 11 16 16 C 1.76198 * 107.21922 * 64.99440 * 13 12 11 17 17 C 1.38247 * 119.92916 * 270.02271 * 16 13 12 18 18 C 1.38240 * 120.14459 * 179.74977 * 17 16 13 19 19 C 1.38552 * 120.02633 * 0.42901 * 18 17 16 20 20 C 1.39265 * 119.82706 * 359.57585 * 19 18 17 21 21 C 1.38231 * 119.92687 * 90.00462 * 16 13 12 22 22 O 1.36496 * 108.64230 * 180.24572 * 20 19 18 23 23 C 1.43981 * 105.48444 * 342.72036 * 22 20 19 24 24 O 1.36505 * 131.53353 * 179.87931 * 19 18 17 25 25 C 1.40653 * 107.85475 * 0.22377 * 11 10 9 26 26 N 1.30940 * 108.39860 * 359.62058 * 25 11 10 27 27 H 0.97001 * 120.00263 * 359.97438 * 1 2 3 28 28 H 1.07999 * 126.24182 * 0.07158 * 10 9 7 29 29 H 0.97005 * 119.99609 * 314.99494 * 12 11 10 30 30 H 1.07994 * 119.93290 * 0.02562 * 17 16 13 31 31 H 1.07997 * 119.99327 * 180.33354 * 18 17 16 32 32 H 1.08003 * 119.98943 * 0.02562 * 21 16 13 33 33 H 1.09007 * 110.56955 * 268.54960 * 23 22 20 34 34 H 1.09003 * 110.57719 * 145.67764 * 23 22 20 35 35 H 1.07995 * 125.80070 * 179.77766 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 3.7070 1.3463 -0.0006 5 1 1.8883 2.3965 -1.2125 6 1 1.8883 2.3964 1.2125 7 6 2.0079 -1.2036 -0.0005 8 1 3.0879 -1.2036 -0.0010 9 7 1.3213 -2.3927 -0.0016 10 6 1.8752 -3.6415 -0.0027 11 6 0.8582 -4.5388 -0.0041 12 7 0.9893 -5.9385 -0.0061 13 16 0.0568 -6.8589 1.0066 14 8 0.1594 -6.2675 2.2947 15 8 0.3961 -8.2135 0.7440 16 6 -1.6186 -6.6583 0.4992 17 6 -2.3877 -5.6467 1.0435 18 6 -3.7011 -5.4820 0.6449 19 6 -4.2526 -6.3370 -0.2957 20 6 -3.4777 -7.3561 -0.8440 21 6 -2.1609 -7.5125 -0.4426 22 8 -4.2393 -8.0493 -1.7399 23 6 -5.6030 -7.7027 -1.4346 24 8 -5.4997 -6.3918 -0.8480 25 6 -0.3509 -3.8203 -0.0090 26 7 -0.0715 -2.5411 -0.0024 27 1 -0.4850 0.8400 0.0004 28 1 2.9304 -3.8719 -0.0018 29 1 1.6260 -6.3651 -0.6007 30 1 -1.9604 -4.9809 1.7786 31 1 -4.2981 -4.6876 1.0677 32 1 -1.5578 -8.3020 -0.8662 33 1 -6.0271 -8.4093 -0.7210 34 1 -6.2026 -7.6690 -2.3442 35 1 -1.3414 -4.2505 -0.0146 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777931520.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:03 Heat of formation + Delta-G solvation = -36.479126 kcal Electronic energy + Delta-G solvation = -26579.583483 eV Core-core repulsion = 22479.490004 eV Total energy + Delta-G solvation = -4100.093479 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.061 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.36462 -41.44032 -39.15303 -38.34475 -37.48968 -36.99391 -36.22251 -34.80135 -32.27409 -32.04820 -31.36241 -29.22872 -27.02114 -26.65616 -24.57174 -24.31411 -22.64005 -21.75880 -20.86124 -19.88116 -19.19968 -19.09410 -18.55281 -18.34238 -17.97827 -17.40227 -17.09147 -16.60267 -16.18325 -15.73871 -15.59944 -15.26929 -15.12411 -15.08529 -15.03648 -14.42606 -14.16496 -14.13216 -13.68015 -13.47907 -13.34738 -13.23705 -13.14129 -12.88284 -12.75454 -12.71068 -12.34584 -12.03685 -12.01882 -11.72401 -11.18481 -10.71187 -10.26596 -10.12165 -9.44196 -8.82378 -8.45363 -6.24657 -0.77652 -0.45950 -0.06061 1.30261 1.43506 1.49563 1.61315 1.76071 1.88940 2.09170 2.16391 2.27368 2.32223 2.72660 2.86338 3.11089 3.16951 3.31995 3.68968 3.82561 3.89425 4.01123 4.13030 4.27329 4.32453 4.56908 4.57953 4.68447 4.71371 4.80583 4.87817 4.96142 5.10340 5.26339 5.45540 5.86482 5.93462 6.11206 6.35762 6.77122 7.44293 7.63770 8.53812 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.014677 B = 0.003691 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.311089 B = 7585.178001 C = 8962.598818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C -0.001 4.001 3 Si 1.014 2.986 4 H -0.245 1.245 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.354 4.354 8 H 0.138 0.862 9 N -0.168 5.168 10 C -0.062 4.062 11 C -0.038 4.038 12 N -1.010 6.010 13 S 2.725 3.275 14 O -0.977 6.977 15 O -0.971 6.971 16 C -0.672 4.672 17 C -0.010 4.010 18 C -0.124 4.124 19 C 0.086 3.914 20 C 0.000 4.000 21 C -0.004 4.004 22 O -0.315 6.315 23 C 0.201 3.799 24 O -0.314 6.314 25 C -0.078 4.078 26 N -0.292 5.292 27 H 0.277 0.723 28 H 0.181 0.819 29 H 0.427 0.573 30 H 0.155 0.845 31 H 0.165 0.835 32 H 0.168 0.832 33 H 0.114 0.886 34 H 0.169 0.831 35 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.004 -12.244 -2.344 14.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.213 4.213 3 Si 0.834 3.166 4 H -0.168 1.168 5 H -0.198 1.198 6 H -0.198 1.198 7 C -0.485 4.485 8 H 0.155 0.845 9 N 0.064 4.936 10 C -0.214 4.214 11 C -0.146 4.146 12 N -0.765 5.765 13 S 2.815 3.185 14 O -0.967 6.967 15 O -0.961 6.961 16 C -0.760 4.760 17 C -0.030 4.030 18 C -0.143 4.143 19 C 0.040 3.960 20 C -0.045 4.045 21 C -0.023 4.023 22 O -0.231 6.231 23 C 0.090 3.910 24 O -0.229 6.229 25 C -0.255 4.255 26 N -0.123 5.123 27 H 0.087 0.913 28 H 0.198 0.802 29 H 0.266 0.734 30 H 0.173 0.827 31 H 0.183 0.817 32 H 0.185 0.815 33 H 0.132 0.868 34 H 0.186 0.814 35 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -7.640 -11.387 -1.740 13.822 hybrid contribution -0.088 -0.093 -0.802 0.812 sum -7.728 -11.480 -2.542 14.071 Atomic orbital electron populations 1.70346 1.08099 1.29065 1.37254 1.26738 0.96491 1.03921 0.94142 0.84590 0.79012 0.74813 0.78176 1.16792 1.19771 1.19832 1.20618 0.92944 0.80913 1.54030 0.84473 1.44853 1.03689 1.04748 1.40331 1.22335 0.99444 0.84438 1.15198 1.16696 0.92580 0.82298 1.23056 1.52003 1.54770 1.11546 1.58183 1.00893 0.73150 0.71693 0.72790 1.93561 1.86056 1.78392 1.38714 1.93550 1.83500 1.33350 1.85698 1.30660 1.25557 1.07213 1.12525 1.20913 0.92479 0.93562 0.96004 1.20414 0.95591 1.01191 0.97123 1.20221 0.85243 0.95958 0.94533 1.19818 0.94891 0.95369 0.94428 1.19808 0.91969 0.97625 0.92935 1.87367 1.18434 1.65991 1.51352 1.26341 0.82812 0.80221 1.01577 1.87396 1.29597 1.36548 1.69367 1.24357 0.98467 0.92087 1.10542 1.78112 0.91952 1.16001 1.26260 0.91308 0.80157 0.73434 0.82725 0.81716 0.81477 0.86823 0.81416 0.80597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.71 11.81 21.66 0.26 -44.45 16 2 C 0.00 -0.04 5.50 84.95 0.47 0.43 16 3 Si 1.01 37.38 29.55 68.60 2.03 39.41 16 4 H -0.25 -8.22 7.11 99.48 0.71 -7.51 16 5 H -0.27 -9.86 7.11 99.48 0.71 -9.16 16 6 H -0.27 -9.94 7.11 99.48 0.71 -9.24 16 7 C -0.35 -18.06 10.25 84.01 0.86 -17.20 16 8 H 0.14 6.17 7.83 -2.91 -0.02 6.15 16 9 N -0.17 -8.82 3.74 -189.98 -0.71 -9.54 16 10 C -0.06 -2.79 11.50 83.35 0.96 -1.83 16 11 C -0.04 -1.60 6.41 37.72 0.24 -1.36 16 12 N -1.01 -32.70 5.93 -51.65 -0.31 -33.00 16 13 S 2.72 87.32 5.61 -56.49 -0.32 87.01 16 14 O -0.98 -38.12 17.00 -128.00 -2.18 -40.29 16 15 O -0.97 -31.22 17.27 -128.00 -2.21 -33.44 16 16 C -0.67 -19.97 5.23 22.27 0.12 -19.85 16 17 C -0.01 -0.31 6.33 22.27 0.14 -0.17 16 18 C -0.12 -3.32 10.06 22.35 0.22 -3.09 16 19 C 0.09 2.28 7.15 22.59 0.16 2.44 16 20 C 0.00 0.00 7.15 22.59 0.16 0.17 16 21 C 0.00 -0.10 9.53 22.34 0.21 0.12 16 22 O -0.31 -7.14 11.40 -76.01 -0.87 -8.00 16 23 C 0.20 3.02 8.89 113.37 1.01 4.03 16 24 O -0.31 -7.12 11.40 -76.10 -0.87 -7.99 16 25 C -0.08 -3.59 10.70 85.42 0.91 -2.67 16 26 N -0.29 -15.98 10.40 -56.45 -0.59 -16.57 16 27 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 28 H 0.18 6.66 8.06 -2.91 -0.02 6.63 16 29 H 0.43 10.98 8.96 -96.74 -0.87 10.11 16 30 H 0.16 4.85 7.16 -2.91 -0.02 4.83 16 31 H 0.17 3.71 8.06 -2.91 -0.02 3.69 16 32 H 0.17 3.82 7.61 -2.91 -0.02 3.80 16 33 H 0.11 1.10 8.14 -2.38 -0.02 1.08 16 34 H 0.17 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.18 7.13 4.21 -2.91 -0.01 7.12 16 Total: -1.00 -74.01 320.62 0.03 -73.98 By element: Atomic # 1 Polarization: 31.56 SS G_CDS: 0.32 Total: 31.88 kcal Atomic # 6 Polarization: -44.46 SS G_CDS: 5.47 Total: -38.99 kcal Atomic # 7 Polarization: -102.22 SS G_CDS: -1.35 Total: -103.56 kcal Atomic # 8 Polarization: -83.60 SS G_CDS: -6.12 Total: -89.72 kcal Atomic # 14 Polarization: 37.38 SS G_CDS: 2.03 Total: 39.41 kcal Atomic # 16 Polarization: 87.32 SS G_CDS: -0.32 Total: 87.01 kcal Total: -74.01 0.03 -73.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777931520.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.500 kcal (2) G-P(sol) polarization free energy of solvation -74.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds