Wall clock time and date at job start Tue Mar 31 2020 20:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38997 * 119.38552 * 2 1 4 4 C 1.38464 * 118.66958 * 179.73986 * 3 2 1 5 5 C 1.41162 * 118.56581 * 0.49871 * 4 3 2 6 6 C 1.38733 * 118.99371 * 359.47599 * 5 4 3 7 7 Cl 1.73595 * 119.89438 * 180.29477 * 6 5 4 8 8 N 1.31726 * 119.38503 * 179.97438 * 2 1 3 9 9 C 1.47500 * 105.83097 * 179.69349 * 5 4 3 10 10 O 1.21459 * 125.65391 * 179.78450 * 9 5 4 11 11 N 1.34582 * 108.68704 * 359.74997 * 9 5 4 12 12 C 1.46501 * 124.45067 * 179.97438 * 11 9 5 13 13 C 1.50701 * 109.46972 * 269.99807 * 12 11 9 14 14 O 1.21287 * 120.00189 * 0.02562 * 13 12 11 15 15 N 1.34781 * 120.00236 * 180.02562 * 13 12 11 16 16 C 1.46495 * 120.00263 * 179.97438 * 15 13 12 17 17 C 1.50701 * 109.47232 * 179.97438 * 16 15 13 18 18 H 1.08000 * 119.99964 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00156 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99882 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99894 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47329 * 59.99765 * 21 19 17 23 23 H 1.48504 * 109.47038 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46921 * 299.99447 * 21 19 17 25 25 C 1.34625 * 111.08791 * 359.97438 * 11 9 5 26 26 O 1.21413 * 125.76754 * 179.97438 * 25 11 9 27 27 H 1.08995 * 109.47108 * 270.02766 * 1 2 3 28 28 H 1.09009 * 109.47108 * 30.02336 * 1 2 3 29 29 H 1.09000 * 109.46933 * 150.02251 * 1 2 3 30 30 H 1.08000 * 120.66490 * 0.02562 * 3 2 1 31 31 H 1.08993 * 109.47770 * 29.99907 * 12 11 9 32 32 H 1.09001 * 109.46662 * 150.00411 * 12 11 9 33 33 H 0.97001 * 119.99292 * 0.02562 * 15 13 12 34 34 H 1.08997 * 109.47596 * 300.00626 * 16 15 13 35 35 H 1.09001 * 109.46706 * 60.00626 * 16 15 13 36 36 H 0.96997 * 119.99382 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1890 1.2111 0.0000 4 6 3.5735 1.1938 0.0055 5 6 4.2330 -0.0543 0.0001 6 6 3.4743 -1.2157 0.0006 7 17 4.2611 -2.7631 0.0018 8 7 2.1533 -1.1478 0.0005 9 6 5.6757 0.2529 0.0004 10 8 6.5736 -0.5649 0.0002 11 7 5.8319 1.5897 0.0000 12 6 7.1280 2.2726 0.0007 13 6 7.5714 2.5072 1.4217 14 8 6.8737 2.1398 2.3433 15 7 8.7433 3.1255 1.6687 16 6 9.1741 3.3541 3.0501 17 6 10.5074 4.0565 3.0508 18 1 10.9859 4.3078 2.1158 19 6 11.1165 4.3782 4.2452 20 7 10.5336 4.0726 5.3839 21 14 12.7689 5.2495 4.2460 22 1 12.6417 6.5527 3.5457 23 1 13.2056 5.4811 5.6464 24 1 13.7727 4.4076 3.5468 25 6 4.6405 2.2166 -0.0010 26 8 4.4713 3.4189 -0.0011 27 1 -0.3633 0.0005 1.0276 28 1 -0.3634 0.8898 -0.5142 29 1 -0.3633 -0.8902 -0.5135 30 1 1.6498 2.1469 0.0004 31 1 7.8647 1.6545 -0.5124 32 1 7.0349 3.2291 -0.5135 33 1 9.3011 3.4197 0.9317 34 1 8.4371 3.9721 3.5630 35 1 9.2675 2.3977 3.5645 36 1 10.9620 4.2993 6.2241 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794535565.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:36 Heat of formation + Delta-G solvation = -45.003219 kcal Electronic energy + Delta-G solvation = -25679.290285 eV Core-core repulsion = 21576.783467 eV Total energy + Delta-G solvation = -4102.506818 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.066 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.81627 -40.27433 -38.88064 -38.72290 -37.13759 -36.13616 -34.36617 -33.85609 -32.93352 -32.42414 -29.80896 -28.35132 -26.99134 -25.23190 -24.45918 -22.65917 -22.52355 -20.64014 -19.82627 -18.39986 -17.98782 -17.72441 -17.08947 -16.60688 -16.02782 -15.93200 -15.65016 -15.14695 -15.08910 -14.90261 -14.79599 -14.43557 -14.22523 -14.05361 -13.42778 -13.15710 -12.96535 -12.87307 -12.65195 -12.02799 -11.95395 -11.67928 -11.64456 -11.20935 -11.05241 -10.96854 -10.89966 -10.65254 -10.50543 -10.33430 -10.22663 -9.55064 -9.47242 -9.14493 -8.79618 -8.02539 -6.20184 -4.27918 -0.55862 0.06978 1.23054 1.59026 1.86375 2.63874 2.91383 2.99966 3.11789 3.23657 3.28421 3.29859 3.53339 3.82294 3.93053 4.07147 4.24184 4.32284 4.39422 4.68815 4.92053 4.98772 5.01511 5.06118 5.10992 5.16083 5.17491 5.30878 5.36950 5.66600 6.31825 6.87604 6.92172 7.19374 7.25515 7.35515 7.44233 7.58412 7.90841 8.45045 8.66983 8.91424 9.38355 10.89971 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.020339 B = 0.002562 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.303206 B =10928.393009 C =11546.918942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.182 3.818 3 C -0.100 4.100 4 C -0.066 4.066 5 C -0.188 4.188 6 C 0.248 3.752 7 Cl 0.008 6.992 8 N -0.464 5.464 9 C 0.586 3.414 10 O -0.436 6.436 11 N -0.553 5.553 12 C 0.090 3.910 13 C 0.485 3.515 14 O -0.546 6.546 15 N -0.703 5.703 16 C 0.251 3.749 17 C -0.546 4.546 18 H 0.064 0.936 19 C 0.064 3.936 20 N -0.885 5.885 21 Si 0.906 3.094 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.275 1.275 25 C 0.583 3.417 26 O -0.443 6.443 27 H 0.093 0.907 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.165 0.835 31 H 0.127 0.873 32 H 0.126 0.874 33 H 0.393 0.607 34 H 0.029 0.971 35 H 0.029 0.971 36 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.365 -8.068 -16.154 26.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.041 3.959 3 C -0.120 4.120 4 C -0.077 4.077 5 C -0.195 4.195 6 C 0.086 3.914 7 Cl 0.037 6.963 8 N -0.176 5.176 9 C 0.373 3.627 10 O -0.305 6.305 11 N -0.295 5.295 12 C -0.034 4.034 13 C 0.267 3.733 14 O -0.424 6.424 15 N -0.351 5.351 16 C 0.130 3.870 17 C -0.584 4.584 18 H 0.082 0.918 19 C -0.140 4.140 20 N -0.522 5.522 21 Si 0.733 3.267 22 H -0.200 1.200 23 H -0.210 1.210 24 H -0.200 1.200 25 C 0.370 3.630 26 O -0.312 6.312 27 H 0.112 0.888 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.183 0.817 31 H 0.145 0.855 32 H 0.144 0.856 33 H 0.226 0.774 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -19.696 -8.980 -15.248 26.478 hybrid contribution 1.850 1.205 -0.079 2.209 sum -17.846 -7.775 -15.328 24.776 Atomic orbital electron populations 1.20906 0.86325 1.04828 1.04525 1.21721 0.97783 0.86199 0.90203 1.21750 0.91552 1.00763 0.97954 1.20859 0.94874 0.93739 0.98240 1.21027 0.95930 0.93967 1.08540 1.21058 0.88662 0.87433 0.94283 1.98475 1.76914 1.25324 1.95558 1.67098 1.07167 1.29928 1.13431 1.17733 0.87902 0.81773 0.75320 1.90853 1.46930 1.50480 1.42209 1.45960 1.08125 1.08153 1.67263 1.21731 0.82956 1.00429 0.98249 1.20474 0.82946 0.79746 0.90142 1.90702 1.54409 1.51694 1.45636 1.46390 1.19406 1.57087 1.12249 1.19165 0.94877 0.97092 0.75838 1.21160 1.04170 1.39936 0.93129 0.91792 1.24958 0.98252 0.95605 0.95175 1.69965 1.38816 1.45861 0.97567 0.86444 0.83102 0.79931 0.77254 1.20016 1.21046 1.20003 1.17951 0.82555 0.87354 0.75190 1.90839 1.84401 1.13316 1.42674 0.88827 0.89285 0.89264 0.81738 0.85535 0.85615 0.77355 0.95347 0.95326 0.92310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.40 10.16 36.00 0.37 -0.03 16 2 C 0.18 1.40 6.80 -82.36 -0.56 0.84 16 3 C -0.10 -0.81 9.79 -39.22 -0.38 -1.19 16 4 C -0.07 -0.77 6.48 -104.79 -0.68 -1.44 16 5 C -0.19 -2.42 6.26 -104.83 -0.66 -3.07 16 6 C 0.25 2.97 7.31 -17.18 -0.13 2.84 16 7 Cl 0.01 0.10 28.73 -51.86 -1.49 -1.39 16 8 N -0.46 -4.79 10.22 -6.31 -0.06 -4.85 16 9 C 0.59 8.78 7.98 -12.57 -0.10 8.68 16 10 O -0.44 -7.32 17.30 5.40 0.09 -7.23 16 11 N -0.55 -8.11 2.12 -118.99 -0.25 -8.37 16 12 C 0.09 1.25 6.23 -5.19 -0.03 1.22 16 13 C 0.48 9.57 7.90 -10.98 -0.09 9.48 16 14 O -0.55 -13.25 16.43 5.55 0.09 -13.15 16 15 N -0.70 -14.40 5.55 -61.47 -0.34 -14.74 16 16 C 0.25 6.60 5.43 -5.20 -0.03 6.57 16 17 C -0.55 -14.65 9.28 -34.44 -0.32 -14.97 16 18 H 0.06 1.58 7.60 -52.49 -0.40 1.19 16 19 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 20 N -0.89 -26.07 13.29 55.43 0.74 -25.33 16 21 Si 0.91 20.74 29.54 -169.99 -5.02 15.72 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 25 C 0.58 8.19 8.03 -12.42 -0.10 8.10 16 26 O -0.44 -6.97 17.68 5.44 0.10 -6.87 16 27 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.09 0.13 8.08 -51.92 -0.42 -0.29 16 29 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.17 0.85 8.06 -52.49 -0.42 0.42 16 31 H 0.13 1.42 7.96 -51.93 -0.41 1.01 16 32 H 0.13 1.38 7.97 -51.93 -0.41 0.97 16 33 H 0.39 6.62 8.32 -40.82 -0.34 6.28 16 34 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 348.13 15.07 5.25 5.25 Total: -1.00 -35.75 348.13 -6.94 -42.69 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: -3.23 Total: -0.41 kcal Atomic # 6 Polarization: 21.49 SS G_CDS: -2.80 Total: 18.69 kcal Atomic # 7 Polarization: -53.38 SS G_CDS: 0.08 Total: -53.30 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: 0.28 Total: -27.25 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 17 Polarization: 0.10 SS G_CDS: -1.49 Total: -1.39 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -35.75 -6.94 -42.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794535565.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.312 kcal (2) G-P(sol) polarization free energy of solvation -35.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds