Wall clock time and date at job start Tue Mar 31 2020 20:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38997 * 119.38552 * 2 1 4 4 C 1.38464 * 118.66958 * 179.73986 * 3 2 1 5 5 C 1.41162 * 118.56581 * 0.49871 * 4 3 2 6 6 C 1.38733 * 118.99371 * 359.47599 * 5 4 3 7 7 Cl 1.73595 * 119.89438 * 180.29477 * 6 5 4 8 8 N 1.31726 * 119.38503 * 179.97438 * 2 1 3 9 9 C 1.47500 * 105.83097 * 179.69349 * 5 4 3 10 10 O 1.21459 * 125.65391 * 179.78450 * 9 5 4 11 11 N 1.34582 * 108.68704 * 359.74997 * 9 5 4 12 12 C 1.46501 * 124.45067 * 179.97438 * 11 9 5 13 13 C 1.50701 * 109.46972 * 269.99807 * 12 11 9 14 14 O 1.21287 * 120.00189 * 0.02562 * 13 12 11 15 15 N 1.34781 * 120.00236 * 180.02562 * 13 12 11 16 16 C 1.46495 * 120.00263 * 179.97438 * 15 13 12 17 17 C 1.50701 * 109.47232 * 179.97438 * 16 15 13 18 18 H 1.08000 * 119.99964 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00156 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99882 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99894 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47329 * 59.99765 * 21 19 17 23 23 H 1.48504 * 109.47038 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46921 * 299.99447 * 21 19 17 25 25 C 1.34625 * 111.08791 * 359.97438 * 11 9 5 26 26 O 1.21413 * 125.76754 * 179.97438 * 25 11 9 27 27 H 1.08995 * 109.47108 * 270.02766 * 1 2 3 28 28 H 1.09009 * 109.47108 * 30.02336 * 1 2 3 29 29 H 1.09000 * 109.46933 * 150.02251 * 1 2 3 30 30 H 1.08000 * 120.66490 * 0.02562 * 3 2 1 31 31 H 1.08993 * 109.47770 * 29.99907 * 12 11 9 32 32 H 1.09001 * 109.46662 * 150.00411 * 12 11 9 33 33 H 0.97001 * 119.99292 * 0.02562 * 15 13 12 34 34 H 1.08997 * 109.47596 * 300.00626 * 16 15 13 35 35 H 1.09001 * 109.46706 * 60.00626 * 16 15 13 36 36 H 0.96997 * 119.99382 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1890 1.2111 0.0000 4 6 3.5735 1.1938 0.0055 5 6 4.2330 -0.0543 0.0001 6 6 3.4743 -1.2157 0.0006 7 17 4.2611 -2.7631 0.0018 8 7 2.1533 -1.1478 0.0005 9 6 5.6757 0.2529 0.0004 10 8 6.5736 -0.5649 0.0002 11 7 5.8319 1.5897 0.0000 12 6 7.1280 2.2726 0.0007 13 6 7.5714 2.5072 1.4217 14 8 6.8737 2.1398 2.3433 15 7 8.7433 3.1255 1.6687 16 6 9.1741 3.3541 3.0501 17 6 10.5074 4.0565 3.0508 18 1 10.9859 4.3078 2.1158 19 6 11.1165 4.3782 4.2452 20 7 10.5336 4.0726 5.3839 21 14 12.7689 5.2495 4.2460 22 1 12.6417 6.5527 3.5457 23 1 13.2056 5.4811 5.6464 24 1 13.7727 4.4076 3.5468 25 6 4.6405 2.2166 -0.0010 26 8 4.4713 3.4189 -0.0011 27 1 -0.3633 0.0005 1.0276 28 1 -0.3634 0.8898 -0.5142 29 1 -0.3633 -0.8902 -0.5135 30 1 1.6498 2.1469 0.0004 31 1 7.8647 1.6545 -0.5124 32 1 7.0349 3.2291 -0.5135 33 1 9.3011 3.4197 0.9317 34 1 8.4371 3.9721 3.5630 35 1 9.2675 2.3977 3.5645 36 1 10.9620 4.2993 6.2241 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794535565.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:35 Heat of formation + Delta-G solvation = -72.122640 kcal Electronic energy + Delta-G solvation = -25680.466271 eV Core-core repulsion = 21576.783467 eV Total energy + Delta-G solvation = -4103.682804 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.066 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.83624 -41.22875 -40.31479 -40.02360 -38.02505 -37.27947 -36.26328 -34.86088 -34.41258 -33.63514 -31.00858 -29.36383 -28.57671 -26.23764 -25.56447 -24.44838 -23.42383 -22.02120 -21.19167 -19.50063 -19.26763 -18.86811 -18.17659 -18.01095 -17.35299 -17.20601 -16.88572 -16.60459 -16.41974 -16.12757 -16.00028 -15.66439 -15.37375 -15.18632 -14.70181 -14.34792 -14.05790 -13.92953 -13.82098 -13.30971 -13.17362 -12.99178 -12.71638 -12.69156 -12.53873 -12.27975 -12.25258 -12.02634 -11.81438 -11.55351 -11.49685 -11.11419 -10.82948 -10.74413 -10.30854 -9.97456 -8.31643 -6.48828 -1.47429 -0.73026 0.37019 0.63429 0.78578 1.42443 1.46432 1.49950 1.52872 1.55122 2.06936 2.16125 2.27486 2.47545 2.70467 2.99461 3.03532 3.29724 3.42888 3.66634 3.73635 3.86737 3.96831 4.04466 4.09211 4.39044 4.78628 4.80874 4.85282 5.03748 5.16796 5.22519 5.32736 5.38685 5.59283 5.78473 5.79240 6.17809 6.22860 6.60083 6.71602 7.17500 7.32300 8.80472 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.020339 B = 0.002562 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.303206 B =10928.393009 C =11546.918942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.195 3.805 3 C -0.078 4.078 4 C -0.079 4.079 5 C -0.210 4.210 6 C 0.242 3.758 7 Cl -0.001 7.001 8 N -0.474 5.474 9 C 0.583 3.417 10 O -0.466 6.466 11 N -0.561 5.561 12 C 0.100 3.900 13 C 0.480 3.520 14 O -0.597 6.597 15 N -0.696 5.696 16 C 0.268 3.732 17 C -0.557 4.557 18 H 0.088 0.912 19 C 0.003 3.997 20 N -0.932 5.932 21 Si 0.987 3.013 22 H -0.260 1.260 23 H -0.287 1.287 24 H -0.261 1.261 25 C 0.583 3.417 26 O -0.465 6.465 27 H 0.108 0.892 28 H 0.120 0.880 29 H 0.093 0.907 30 H 0.203 0.797 31 H 0.158 0.842 32 H 0.162 0.838 33 H 0.414 0.586 34 H -0.011 1.011 35 H -0.014 1.014 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.492 -6.967 -18.211 28.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.054 3.946 3 C -0.098 4.098 4 C -0.089 4.089 5 C -0.217 4.217 6 C 0.081 3.919 7 Cl 0.028 6.972 8 N -0.187 5.187 9 C 0.371 3.629 10 O -0.337 6.337 11 N -0.302 5.302 12 C -0.024 4.024 13 C 0.265 3.735 14 O -0.479 6.479 15 N -0.346 5.346 16 C 0.145 3.855 17 C -0.595 4.595 18 H 0.106 0.894 19 C -0.197 4.197 20 N -0.571 5.571 21 Si 0.809 3.191 22 H -0.185 1.185 23 H -0.212 1.212 24 H -0.186 1.186 25 C 0.372 3.628 26 O -0.335 6.335 27 H 0.127 0.873 28 H 0.139 0.861 29 H 0.112 0.888 30 H 0.220 0.780 31 H 0.176 0.824 32 H 0.180 0.820 33 H 0.251 0.749 34 H 0.006 0.994 35 H 0.004 0.996 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -20.826 -7.885 -17.374 28.245 hybrid contribution 1.989 0.835 0.571 2.231 sum -18.838 -7.050 -16.803 26.209 Atomic orbital electron populations 1.21146 0.82779 1.06657 1.05861 1.22549 0.99676 0.85148 0.87242 1.22271 0.90083 1.02547 0.94898 1.20811 0.95857 0.92012 1.00262 1.20847 0.94727 0.95006 1.11168 1.21088 0.89322 0.86887 0.94631 1.98465 1.77339 1.25794 1.95616 1.67223 1.06188 1.31278 1.13977 1.18111 0.88778 0.81639 0.74328 1.90823 1.47968 1.51063 1.43849 1.46107 1.08599 1.08318 1.67176 1.21821 0.83715 1.02990 0.93830 1.21521 0.81735 0.77867 0.92361 1.90674 1.55722 1.53380 1.48083 1.46069 1.20377 1.57550 1.10622 1.18572 0.94401 0.94162 0.78375 1.21588 1.04097 1.39483 0.94284 0.89367 1.26099 1.02719 0.96266 0.94603 1.70138 1.41031 1.47404 0.98484 0.85180 0.77557 0.79043 0.77284 1.18461 1.21228 1.18595 1.18269 0.82945 0.87443 0.74176 1.90820 1.84723 1.14122 1.43842 0.87341 0.86125 0.88809 0.78042 0.82445 0.82030 0.74882 0.99351 0.99558 0.92227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.32 10.16 71.23 0.72 0.40 16 2 C 0.20 2.41 6.80 42.76 0.29 2.70 16 3 C -0.08 -1.03 9.79 22.51 0.22 -0.81 16 4 C -0.08 -1.74 6.48 -19.98 -0.13 -1.86 16 5 C -0.21 -5.42 6.26 -20.00 -0.13 -5.54 16 6 C 0.24 5.72 7.31 84.75 0.62 6.34 16 7 Cl 0.00 -0.03 28.73 -2.72 -0.08 -0.11 16 8 N -0.47 -9.03 10.22 -173.88 -1.78 -10.80 16 9 C 0.58 17.80 7.98 86.72 0.69 18.49 16 10 O -0.47 -16.16 17.30 -3.59 -0.06 -16.22 16 11 N -0.56 -16.35 2.12 -767.22 -1.62 -17.98 16 12 C 0.10 2.67 6.23 85.63 0.53 3.20 16 13 C 0.48 19.31 7.90 87.66 0.69 20.00 16 14 O -0.60 -30.33 16.43 -3.05 -0.05 -30.38 16 15 N -0.70 -28.95 5.55 -466.79 -2.59 -31.54 16 16 C 0.27 14.75 5.43 85.63 0.46 15.21 16 17 C -0.56 -30.11 9.28 25.60 0.24 -29.87 16 18 H 0.09 4.23 7.60 -2.91 -0.02 4.21 16 19 C 0.00 0.15 5.46 84.65 0.46 0.62 16 20 N -0.93 -56.63 13.29 21.45 0.28 -56.35 16 21 Si 0.99 42.23 29.54 68.60 2.03 44.25 16 22 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 23 H -0.29 -12.25 7.11 99.48 0.71 -11.55 16 24 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 25 C 0.58 16.05 8.03 86.80 0.70 16.75 16 26 O -0.46 -14.18 17.68 -3.44 -0.06 -14.24 16 27 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 28 H 0.12 -0.31 8.08 -2.38 -0.02 -0.33 16 29 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.20 1.13 8.06 -2.91 -0.02 1.11 16 31 H 0.16 3.27 7.96 -2.39 -0.02 3.25 16 32 H 0.16 3.18 7.97 -2.39 -0.02 3.17 16 33 H 0.41 13.52 8.32 -92.71 -0.77 12.75 16 34 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 35 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 36 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -83.29 348.13 1.85 -81.44 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: 0.40 Total: 6.29 kcal Atomic # 6 Polarization: 40.25 SS G_CDS: 5.38 Total: 45.63 kcal Atomic # 7 Polarization: -110.96 SS G_CDS: -5.70 Total: -116.67 kcal Atomic # 8 Polarization: -60.68 SS G_CDS: -0.17 Total: -60.85 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.25 kcal Atomic # 17 Polarization: -0.03 SS G_CDS: -0.08 Total: -0.11 kcal Total: -83.29 1.85 -81.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794535565.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.322 kcal (2) G-P(sol) polarization free energy of solvation -83.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds