Wall clock time and date at job start Tue Mar 31 2020 20:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99420 * 2 1 4 4 H 1.48499 * 109.47546 * 269.99932 * 3 2 1 5 5 H 1.48507 * 109.47281 * 30.00283 * 3 2 1 6 6 H 1.48503 * 109.47090 * 149.99945 * 3 2 1 7 7 C 1.37868 * 120.00628 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99677 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00605 * 180.02562 * 7 2 1 10 10 C 1.52988 * 109.47437 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47253 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99785 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00498 * 179.97438 * 11 10 9 14 14 S 1.65594 * 120.00236 * 180.02562 * 13 11 10 15 15 O 1.42097 * 106.40123 * 311.45954 * 14 13 11 16 16 O 1.42100 * 106.40210 * 178.54374 * 14 13 11 17 17 C 1.76196 * 107.22012 * 65.00062 * 14 13 11 18 18 C 1.39870 * 126.04152 * 269.97764 * 17 14 13 19 19 N 1.30839 * 108.19862 * 180.02562 * 18 17 14 20 20 N 1.40079 * 108.20849 * 359.97438 * 19 18 17 21 21 C 1.46502 * 126.03442 * 179.97438 * 20 19 18 22 22 C 1.53003 * 109.47267 * 304.99629 * 21 20 19 23 23 F 1.39903 * 109.46751 * 65.00379 * 22 21 20 24 24 F 1.39899 * 109.47245 * 184.99769 * 22 21 20 25 25 C 1.34948 * 107.92564 * 0.02562 * 20 19 18 26 26 H 0.96996 * 120.00359 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.46667 * 59.99036 * 9 7 2 28 28 H 1.09004 * 109.46524 * 299.99881 * 9 7 2 29 29 H 1.08997 * 109.47526 * 60.00092 * 10 9 7 30 30 H 1.09004 * 109.47368 * 299.99611 * 10 9 7 31 31 H 0.97004 * 119.99636 * 0.02562 * 13 11 10 32 32 H 1.07997 * 125.89658 * 359.97438 * 18 17 14 33 33 H 1.08994 * 109.47186 * 64.99894 * 21 20 19 34 34 H 1.09001 * 109.46653 * 185.00231 * 21 20 19 35 35 H 1.08997 * 109.47255 * 305.00429 * 22 21 20 36 36 H 1.08007 * 126.12251 * 180.26869 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4463 2.6528 0.7001 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1939 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0217 -2.6362 -0.0001 11 6 5.5287 -2.6362 -0.0001 12 8 6.1350 -1.5858 0.0004 13 7 6.2027 -3.8033 0.0003 14 16 7.8587 -3.8032 0.0009 15 8 8.2602 -2.9008 -1.0207 16 8 8.2600 -5.1659 0.0359 17 6 8.3797 -3.0917 1.5263 18 6 8.6235 -1.7345 1.7605 19 7 8.9922 -1.5949 3.0081 20 7 8.9940 -2.8606 3.6082 21 6 9.3465 -3.1542 4.9995 22 6 10.7412 -2.6015 5.2999 23 9 10.7187 -1.2055 5.2105 24 9 11.1248 -2.9800 6.5909 25 6 8.6148 -3.7618 2.6781 26 1 -0.4850 0.8400 0.0004 27 1 3.8746 -0.6805 0.8905 28 1 3.8752 -0.6794 -0.8895 29 1 3.6588 -3.1499 -0.8903 30 1 3.6581 -3.1503 0.8897 31 1 5.7178 -4.6434 0.0002 32 1 8.5254 -0.9393 1.0363 33 1 8.6198 -2.6878 5.6646 34 1 9.3419 -4.2330 5.1555 35 1 11.4534 -3.0004 4.5776 36 1 8.5124 -4.8266 2.8276 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813088185.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:25 Heat of formation + Delta-G solvation = -136.986203 kcal Electronic energy + Delta-G solvation = -26701.139171 eV Core-core repulsion = 22178.290943 eV Total energy + Delta-G solvation = -4522.848228 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.074 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.53490 -47.51698 -41.73083 -39.81607 -37.30319 -36.00112 -34.67406 -34.34168 -33.64650 -31.37845 -30.98960 -29.37950 -26.49305 -24.44400 -22.49063 -22.36476 -21.59662 -20.27586 -19.67202 -18.86008 -18.13164 -17.91122 -17.76520 -17.39619 -16.86085 -16.35146 -16.08161 -15.50134 -15.36043 -15.06940 -14.60693 -14.40215 -14.20350 -14.02072 -13.85981 -13.69768 -13.39015 -13.10096 -12.96624 -12.78550 -12.59970 -12.32990 -12.13001 -11.98267 -11.79476 -11.54352 -11.08753 -11.02946 -10.69590 -10.39978 -10.18980 -10.04761 -9.94317 -9.77429 -9.56200 -9.28106 -8.57332 -6.09400 -4.09426 0.13665 1.01925 1.65767 2.01134 2.37697 2.84413 2.94931 3.34387 3.41584 3.49078 3.50272 3.54375 3.61440 3.88605 4.07362 4.18371 4.45083 4.48807 4.56228 4.64654 4.79821 5.00629 5.10841 5.22275 5.25966 5.84038 5.88934 6.07091 6.16349 6.43255 6.75587 7.02227 7.22644 7.29464 7.65099 7.81112 8.43364 8.92422 9.52934 11.03145 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.012196 B = 0.003218 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.282864 B = 8699.016685 C =10159.830432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.070 3.930 3 Si 0.876 3.124 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.528 4.528 8 H 0.074 0.926 9 C -0.003 4.003 10 C -0.123 4.123 11 C 0.530 3.470 12 O -0.488 6.488 13 N -1.058 6.058 14 S 2.711 3.289 15 O -0.930 6.930 16 O -0.959 6.959 17 C -0.805 4.805 18 C 0.160 3.840 19 N -0.281 5.281 20 N -0.371 5.371 21 C 0.078 3.922 22 C 0.259 3.741 23 F -0.184 7.184 24 F -0.195 7.195 25 C 0.181 3.819 26 H 0.264 0.736 27 H 0.026 0.974 28 H 0.024 0.976 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.433 0.567 32 H 0.207 0.793 33 H 0.118 0.882 34 H 0.134 0.866 35 H 0.115 0.885 36 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.664 -13.170 9.476 26.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.131 4.131 3 Si 0.703 3.297 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.185 1.185 7 C -0.566 4.566 8 H 0.092 0.908 9 C -0.041 4.041 10 C -0.164 4.164 11 C 0.319 3.681 12 O -0.359 6.359 13 N -0.825 5.825 14 S 2.801 3.199 15 O -0.920 6.920 16 O -0.949 6.949 17 C -0.904 4.904 18 C -0.031 4.031 19 N -0.098 5.098 20 N -0.148 5.148 21 C -0.045 4.045 22 C 0.204 3.796 23 F -0.165 7.165 24 F -0.177 7.177 25 C 0.029 3.971 26 H 0.074 0.926 27 H 0.044 0.956 28 H 0.042 0.958 29 H 0.116 0.884 30 H 0.114 0.886 31 H 0.269 0.731 32 H 0.223 0.777 33 H 0.136 0.864 34 H 0.152 0.848 35 H 0.132 0.868 36 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 21.906 -11.689 9.971 26.756 hybrid contribution -0.327 0.147 0.237 0.430 sum 21.578 -11.542 10.208 26.515 Atomic orbital electron populations 1.69900 1.06321 1.27106 1.50660 1.24964 0.94712 0.99263 0.94200 0.86817 0.80575 0.83385 0.78896 1.20067 1.21428 1.18518 1.21046 0.89019 0.94658 1.51859 0.90799 1.19457 0.96847 0.89773 0.98059 1.21844 0.86164 1.04084 1.04356 1.21646 0.93225 0.81332 0.71896 1.90804 1.70404 1.30089 1.44576 1.55181 1.28793 1.16619 1.81894 1.01496 0.72111 0.73031 0.73308 1.93631 1.79837 1.65492 1.53052 1.93598 1.80352 1.33576 1.87412 1.31465 1.32532 1.04948 1.21479 1.23823 0.91165 0.94718 0.93365 1.77735 1.24464 0.98646 1.08958 1.48924 1.50856 1.05944 1.09115 1.22865 0.97038 1.04498 0.80065 1.21926 0.97056 0.78132 0.82496 1.93104 1.97407 1.29878 1.96104 1.93035 1.92175 1.91060 1.41413 1.22552 0.91071 0.96829 0.86696 0.92610 0.95611 0.95776 0.88379 0.88552 0.73103 0.77668 0.86429 0.84845 0.86753 0.78604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.17 13.96 55.43 0.77 -26.40 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 3 Si 0.88 21.86 27.47 -169.99 -4.67 17.19 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.26 -6.41 6.54 56.52 0.37 -6.04 16 7 C -0.53 -14.32 9.66 -34.44 -0.33 -14.65 16 8 H 0.07 2.09 7.99 -52.49 -0.42 1.67 16 9 C 0.00 -0.07 3.33 -27.89 -0.09 -0.17 16 10 C -0.12 -2.06 5.64 -27.89 -0.16 -2.21 16 11 C 0.53 8.20 7.66 -10.98 -0.08 8.12 16 12 O -0.49 -9.16 14.03 -11.50 -0.16 -9.32 16 13 N -1.06 -11.70 5.70 31.22 0.18 -11.53 16 14 S 2.71 32.77 5.53 -107.50 -0.59 32.18 16 15 O -0.93 -15.01 16.82 -64.60 -1.09 -16.09 16 16 O -0.96 -11.60 17.85 -57.17 -1.02 -12.62 16 17 C -0.80 -9.19 5.84 -40.01 -0.23 -9.43 16 18 C 0.16 2.13 11.04 -17.36 -0.19 1.94 16 19 N -0.28 -3.66 11.73 30.62 0.36 -3.30 16 20 N -0.37 -3.38 3.68 -61.36 -0.23 -3.61 16 21 C 0.08 0.41 6.73 -4.04 -0.03 0.38 16 22 C 0.26 1.64 5.51 37.16 0.20 1.85 16 23 F -0.18 -1.93 16.57 2.25 0.04 -1.89 16 24 F -0.20 -1.35 17.34 2.25 0.04 -1.31 16 25 C 0.18 1.50 11.19 -17.22 -0.19 1.30 16 26 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 27 H 0.03 0.61 7.16 -51.93 -0.37 0.24 16 28 H 0.02 0.57 7.53 -51.93 -0.39 0.18 16 29 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 30 H 0.10 1.42 8.14 -51.93 -0.42 0.99 16 31 H 0.43 3.02 8.83 -34.47 -0.30 2.71 16 32 H 0.21 2.77 7.95 -52.49 -0.42 2.35 16 33 H 0.12 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.13 0.12 8.07 -51.93 -0.42 -0.30 16 35 H 0.12 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.20 0.72 8.06 -52.48 -0.42 0.29 16 LS Contribution 339.96 15.07 5.12 5.12 Total: -1.00 -39.00 339.96 -6.06 -45.05 By element: Atomic # 1 Polarization: 1.09 SS G_CDS: -3.60 Total: -2.52 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: -1.21 Total: -10.96 kcal Atomic # 7 Polarization: -45.92 SS G_CDS: 1.09 Total: -44.83 kcal Atomic # 8 Polarization: -35.77 SS G_CDS: -2.27 Total: -38.03 kcal Atomic # 9 Polarization: -3.28 SS G_CDS: 0.08 Total: -3.20 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.67 Total: 17.19 kcal Atomic # 16 Polarization: 32.77 SS G_CDS: -0.59 Total: 32.18 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -39.00 -6.06 -45.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813088185.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.933 kcal (2) G-P(sol) polarization free energy of solvation -38.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds