Wall clock time and date at job start Tue Mar 31 2020 20:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99420 * 2 1 4 4 H 1.48499 * 109.47546 * 269.99932 * 3 2 1 5 5 H 1.48507 * 109.47281 * 30.00283 * 3 2 1 6 6 H 1.48503 * 109.47090 * 149.99945 * 3 2 1 7 7 C 1.37868 * 120.00628 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99677 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00605 * 180.02562 * 7 2 1 10 10 C 1.52988 * 109.47437 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47253 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99785 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00498 * 179.97438 * 11 10 9 14 14 S 1.65594 * 120.00236 * 180.02562 * 13 11 10 15 15 O 1.42097 * 106.40123 * 311.45954 * 14 13 11 16 16 O 1.42100 * 106.40210 * 178.54374 * 14 13 11 17 17 C 1.76196 * 107.22012 * 65.00062 * 14 13 11 18 18 C 1.39870 * 126.04152 * 269.97764 * 17 14 13 19 19 N 1.30839 * 108.19862 * 180.02562 * 18 17 14 20 20 N 1.40079 * 108.20849 * 359.97438 * 19 18 17 21 21 C 1.46502 * 126.03442 * 179.97438 * 20 19 18 22 22 C 1.53003 * 109.47267 * 304.99629 * 21 20 19 23 23 F 1.39903 * 109.46751 * 65.00379 * 22 21 20 24 24 F 1.39899 * 109.47245 * 184.99769 * 22 21 20 25 25 C 1.34948 * 107.92564 * 0.02562 * 20 19 18 26 26 H 0.96996 * 120.00359 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.46667 * 59.99036 * 9 7 2 28 28 H 1.09004 * 109.46524 * 299.99881 * 9 7 2 29 29 H 1.08997 * 109.47526 * 60.00092 * 10 9 7 30 30 H 1.09004 * 109.47368 * 299.99611 * 10 9 7 31 31 H 0.97004 * 119.99636 * 0.02562 * 13 11 10 32 32 H 1.07997 * 125.89658 * 359.97438 * 18 17 14 33 33 H 1.08994 * 109.47186 * 64.99894 * 21 20 19 34 34 H 1.09001 * 109.46653 * 185.00231 * 21 20 19 35 35 H 1.08997 * 109.47255 * 305.00429 * 22 21 20 36 36 H 1.08007 * 126.12251 * 180.26869 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4463 2.6528 0.7001 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1939 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0217 -2.6362 -0.0001 11 6 5.5287 -2.6362 -0.0001 12 8 6.1350 -1.5858 0.0004 13 7 6.2027 -3.8033 0.0003 14 16 7.8587 -3.8032 0.0009 15 8 8.2602 -2.9008 -1.0207 16 8 8.2600 -5.1659 0.0359 17 6 8.3797 -3.0917 1.5263 18 6 8.6235 -1.7345 1.7605 19 7 8.9922 -1.5949 3.0081 20 7 8.9940 -2.8606 3.6082 21 6 9.3465 -3.1542 4.9995 22 6 10.7412 -2.6015 5.2999 23 9 10.7187 -1.2055 5.2105 24 9 11.1248 -2.9800 6.5909 25 6 8.6148 -3.7618 2.6781 26 1 -0.4850 0.8400 0.0004 27 1 3.8746 -0.6805 0.8905 28 1 3.8752 -0.6794 -0.8895 29 1 3.6588 -3.1499 -0.8903 30 1 3.6581 -3.1503 0.8897 31 1 5.7178 -4.6434 0.0002 32 1 8.5254 -0.9393 1.0363 33 1 8.6198 -2.6878 5.6646 34 1 9.3419 -4.2330 5.1555 35 1 11.4534 -3.0004 4.5776 36 1 8.5124 -4.8266 2.8276 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813088185.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:24 Heat of formation + Delta-G solvation = -168.275877 kcal Electronic energy + Delta-G solvation = -26702.495993 eV Core-core repulsion = 22178.290943 eV Total energy + Delta-G solvation = -4524.205050 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.074 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.08807 -48.10708 -42.49221 -41.06181 -38.32699 -37.05172 -35.57192 -35.47236 -35.27319 -33.26153 -31.76999 -30.01106 -28.26756 -25.00063 -24.00928 -23.23853 -22.30897 -21.74066 -20.65010 -19.60453 -19.35762 -18.68228 -18.67561 -18.33270 -17.94675 -17.47922 -16.92997 -16.48019 -16.29803 -16.16485 -16.08891 -15.45954 -15.33031 -14.98701 -14.67447 -14.50500 -14.44872 -14.30506 -14.11575 -13.82341 -13.63905 -13.41265 -13.34052 -13.18672 -12.92177 -12.80700 -12.37916 -12.14810 -12.02044 -11.95506 -11.75423 -11.66937 -11.38288 -11.11631 -10.82620 -10.75136 -10.47627 -8.28973 -6.31165 -0.81289 0.34947 1.02728 1.10699 1.19015 1.35344 1.38478 1.51018 1.86229 2.36519 2.47695 2.65397 3.04797 3.07806 3.12550 3.26187 3.45599 3.59345 3.69318 3.86742 4.00149 4.10286 4.24473 4.34423 4.37217 4.40415 4.52565 5.01279 5.15390 5.39501 5.47773 5.58034 5.63290 5.79980 6.20242 6.25941 6.58969 6.78547 7.34341 8.86458 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.012196 B = 0.003218 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.282864 B = 8699.016685 C =10159.830432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.014 3.986 3 Si 0.932 3.068 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.258 1.258 7 C -0.524 4.524 8 H 0.056 0.944 9 C -0.005 4.005 10 C -0.119 4.119 11 C 0.541 3.459 12 O -0.525 6.525 13 N -1.038 6.038 14 S 2.733 3.267 15 O -0.975 6.975 16 O -0.954 6.954 17 C -0.826 4.826 18 C 0.140 3.860 19 N -0.315 5.315 20 N -0.366 5.366 21 C 0.074 3.926 22 C 0.252 3.748 23 F -0.213 7.213 24 F -0.198 7.198 25 C 0.206 3.794 26 H 0.266 0.734 27 H 0.016 0.984 28 H 0.013 0.987 29 H 0.118 0.882 30 H 0.122 0.878 31 H 0.452 0.548 32 H 0.188 0.812 33 H 0.118 0.882 34 H 0.188 0.812 35 H 0.136 0.864 36 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.912 -15.644 10.641 28.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.184 4.184 3 Si 0.757 3.243 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.182 1.182 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.043 4.043 10 C -0.161 4.161 11 C 0.329 3.671 12 O -0.398 6.398 13 N -0.806 5.806 14 S 2.825 3.175 15 O -0.965 6.965 16 O -0.944 6.944 17 C -0.927 4.927 18 C -0.050 4.050 19 N -0.133 5.133 20 N -0.144 5.144 21 C -0.047 4.047 22 C 0.198 3.802 23 F -0.195 7.195 24 F -0.180 7.180 25 C 0.052 3.948 26 H 0.075 0.925 27 H 0.034 0.966 28 H 0.031 0.969 29 H 0.136 0.864 30 H 0.140 0.860 31 H 0.293 0.707 32 H 0.205 0.795 33 H 0.136 0.864 34 H 0.205 0.795 35 H 0.153 0.847 36 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 23.153 -14.214 11.131 29.360 hybrid contribution -0.686 0.789 -0.030 1.046 sum 22.467 -13.426 11.100 28.429 Atomic orbital electron populations 1.70013 1.07780 1.27963 1.52767 1.25755 0.95390 1.02674 0.94533 0.85930 0.79430 0.79893 0.79076 1.19576 1.20911 1.18176 1.21429 0.91245 0.93730 1.49841 0.92627 1.19344 0.94101 0.93869 0.96965 1.21696 0.87281 1.00390 1.06700 1.21251 0.92632 0.81810 0.71385 1.90815 1.70910 1.31776 1.46298 1.54777 1.28676 1.16320 1.80847 1.00624 0.71660 0.72342 0.72921 1.93582 1.80565 1.66776 1.55554 1.93598 1.80146 1.33140 1.87537 1.31265 1.34742 1.04399 1.22318 1.23701 0.92213 0.95542 0.93582 1.77651 1.25234 1.01479 1.08986 1.49118 1.49985 1.04817 1.10457 1.23286 0.95947 1.07652 0.77810 1.22279 0.98635 0.76583 0.82702 1.93047 1.97611 1.32568 1.96247 1.93026 1.92294 1.90892 1.41766 1.23330 0.87907 0.98602 0.84920 0.92514 0.96596 0.96853 0.86400 0.86003 0.70685 0.79466 0.86429 0.79482 0.84659 0.73293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.69 13.96 21.44 0.30 -57.39 16 2 C 0.01 0.81 5.47 84.65 0.46 1.27 16 3 Si 0.93 45.42 27.47 68.60 1.88 47.31 16 4 H -0.27 -12.88 7.11 99.48 0.71 -12.18 16 5 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 6 H -0.26 -12.31 6.54 99.48 0.65 -11.66 16 7 C -0.52 -28.44 9.66 25.60 0.25 -28.19 16 8 H 0.06 3.15 7.99 -2.91 -0.02 3.13 16 9 C 0.00 -0.21 3.33 29.84 0.10 -0.11 16 10 C -0.12 -3.76 5.64 29.84 0.17 -3.60 16 11 C 0.54 15.85 7.66 87.66 0.67 16.52 16 12 O -0.52 -19.59 14.03 13.27 0.19 -19.40 16 13 N -1.04 -20.38 5.70 -173.53 -0.99 -21.37 16 14 S 2.73 60.97 5.53 -56.49 -0.31 60.66 16 15 O -0.97 -31.30 16.82 -120.89 -2.03 -33.33 16 16 O -0.95 -19.96 17.85 -128.00 -2.28 -22.24 16 17 C -0.83 -17.33 5.84 21.99 0.13 -17.20 16 18 C 0.14 3.76 11.04 85.24 0.94 4.70 16 19 N -0.32 -8.07 11.73 -57.02 -0.67 -8.74 16 20 N -0.37 -5.63 3.68 -348.05 -1.28 -6.91 16 21 C 0.07 0.50 6.73 86.38 0.58 1.08 16 22 C 0.25 2.65 5.51 71.98 0.40 3.05 16 23 F -0.21 -4.39 16.57 44.97 0.75 -3.65 16 24 F -0.20 -2.31 17.34 44.97 0.78 -1.54 16 25 C 0.21 2.58 11.19 83.54 0.93 3.52 16 26 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 27 H 0.02 0.74 7.16 -2.38 -0.02 0.73 16 28 H 0.01 0.62 7.53 -2.39 -0.02 0.60 16 29 H 0.12 3.26 8.14 -2.39 -0.02 3.25 16 30 H 0.12 3.22 8.14 -2.39 -0.02 3.20 16 31 H 0.45 4.71 8.83 -96.74 -0.85 3.85 16 32 H 0.19 5.47 7.95 -2.91 -0.02 5.44 16 33 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.19 -0.77 8.07 -2.39 -0.02 -0.79 16 35 H 0.14 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.25 0.17 8.06 -2.91 -0.02 0.15 16 Total: -1.00 -87.60 339.96 1.20 -86.41 By element: Atomic # 1 Polarization: -1.08 SS G_CDS: 0.24 Total: -0.85 kcal Atomic # 6 Polarization: -23.59 SS G_CDS: 4.63 Total: -18.96 kcal Atomic # 7 Polarization: -91.77 SS G_CDS: -2.64 Total: -94.41 kcal Atomic # 8 Polarization: -70.85 SS G_CDS: -4.13 Total: -74.98 kcal Atomic # 9 Polarization: -6.71 SS G_CDS: 1.52 Total: -5.18 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.88 Total: 47.31 kcal Atomic # 16 Polarization: 60.97 SS G_CDS: -0.31 Total: 60.66 kcal Total: -87.60 1.20 -86.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813088185.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.868 kcal (2) G-P(sol) polarization free energy of solvation -87.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds