Wall clock time and date at job start Tue Mar 31 2020 20:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00405 * 2 1 4 4 H 1.48502 * 109.47219 * 269.99881 * 3 2 1 5 5 H 1.48507 * 109.46891 * 29.99447 * 3 2 1 6 6 H 1.48491 * 109.47285 * 149.99499 * 3 2 1 7 7 C 1.37873 * 119.99672 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00113 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00289 * 180.02562 * 7 2 1 10 10 S 1.81398 * 109.47345 * 180.02562 * 9 7 2 11 11 O 1.42095 * 110.54020 * 68.38101 * 10 9 7 12 12 O 1.42098 * 110.54577 * 291.62685 * 10 9 7 13 13 N 1.65606 * 104.44752 * 179.97438 * 10 9 7 14 14 C 1.34776 * 119.99548 * 65.00262 * 13 10 9 15 15 O 1.21550 * 120.00567 * 0.02562 * 14 13 10 16 16 C 1.47857 * 119.99755 * 179.97438 * 14 13 10 17 17 C 1.39619 * 120.11452 * 359.97438 * 16 14 13 18 18 C 1.37978 * 119.98604 * 180.02562 * 17 16 14 19 19 C 1.38262 * 120.21570 * 359.97438 * 18 17 16 20 20 C 1.38906 * 120.22757 * 359.76221 * 19 18 17 21 21 N 1.40286 * 119.99740 * 180.28212 * 20 19 18 22 22 C 1.35069 * 127.38648 * 0.23126 * 21 20 19 23 23 N 1.30739 * 107.27666 * 179.97438 * 22 21 20 24 24 N 1.28421 * 110.64449 * 359.97438 * 23 22 21 25 25 N 1.28951 * 110.20214 * 359.73181 * 24 23 22 26 26 C 1.38577 * 120.01313 * 0.51391 * 20 19 18 27 27 H 0.97000 * 119.99619 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47096 * 60.00360 * 9 7 2 29 29 H 1.09001 * 109.47160 * 300.00692 * 9 7 2 30 30 H 0.96996 * 120.00257 * 244.99951 * 13 10 9 31 31 H 1.07997 * 120.00760 * 0.04257 * 17 16 14 32 32 H 1.07999 * 119.89255 * 179.97438 * 18 17 16 33 33 H 1.07997 * 119.89067 * 180.02562 * 19 18 17 34 34 H 1.07999 * 126.36302 * 359.94692 * 22 21 20 35 35 H 1.08002 * 120.11160 * 179.74780 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 16 4.1160 -2.9045 0.0010 11 8 3.8204 -3.5377 -1.2363 12 8 3.8194 -3.5384 1.2376 13 7 5.7657 -2.7596 0.0009 14 6 6.3938 -2.2094 1.0589 15 8 5.7495 -1.8199 2.0132 16 6 7.8667 -2.0805 1.0591 17 6 8.6093 -2.5285 -0.0351 18 6 9.9837 -2.4074 -0.0318 19 6 10.6299 -1.8427 1.0523 20 6 9.8995 -1.3891 2.1432 21 7 10.5597 -0.8115 3.2381 22 6 11.8884 -0.6197 3.3865 23 7 12.0712 -0.0527 4.5503 24 7 10.9486 0.1274 5.1475 25 7 9.9796 -0.3019 4.4130 26 6 8.5192 -1.5112 2.1524 27 1 -0.4849 0.8401 -0.0004 28 1 3.8745 -0.6803 0.8912 29 1 3.8752 -0.6805 -0.8888 30 1 6.2799 -3.0707 -0.7604 31 1 8.1080 -2.9694 -0.8839 32 1 10.5567 -2.7548 -0.8788 33 1 11.7059 -1.7501 1.0491 34 1 12.6571 -0.8856 2.6761 35 1 7.9501 -1.1627 3.0016 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821584037.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:27 Heat of formation + Delta-G solvation = 52.044226 kcal Electronic energy + Delta-G solvation = -25707.614493 eV Core-core repulsion = 21643.652426 eV Total energy + Delta-G solvation = -4063.962067 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.068 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.66627 -40.87215 -39.21011 -36.50403 -35.70880 -35.41327 -34.48903 -33.31228 -32.86324 -31.86056 -30.72432 -29.88490 -25.70415 -25.40718 -23.50688 -23.13638 -22.47837 -21.48161 -19.77154 -19.33827 -17.82083 -17.42593 -17.11853 -17.08646 -16.72421 -16.35147 -16.05317 -15.64568 -15.08334 -15.01734 -14.76982 -14.51409 -14.22727 -13.87235 -13.76086 -13.08814 -12.77377 -12.65142 -12.59208 -12.22502 -12.13328 -12.08212 -11.73415 -11.52091 -11.48514 -11.42573 -10.97821 -10.93466 -10.86131 -10.53218 -10.30892 -9.94738 -9.83183 -9.51107 -9.37611 -8.87647 -6.36262 -4.46339 -0.31868 0.17915 0.70823 0.98794 1.21078 1.79851 2.16066 2.81579 3.09653 3.11715 3.21833 3.22560 3.45737 3.62348 3.84111 4.14938 4.17662 4.18773 4.25335 4.32248 4.34307 4.62542 4.71428 4.78901 4.87126 4.91149 5.04329 5.15630 5.41823 5.46299 5.52881 5.63244 6.06298 6.08734 6.21861 6.63010 7.09981 7.35056 7.92343 7.94575 8.53530 9.18098 10.74561 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.014651 B = 0.003162 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.695525 B = 8853.257052 C = 9947.404999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.092 3.908 3 Si 0.880 3.120 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.261 1.261 7 C -0.535 4.535 8 H 0.088 0.912 9 C -0.457 4.457 10 S 2.577 3.423 11 O -0.956 6.956 12 O -0.939 6.939 13 N -1.057 6.057 14 C 0.577 3.423 15 O -0.472 6.472 16 C -0.111 4.111 17 C -0.072 4.072 18 C -0.099 4.099 19 C -0.094 4.094 20 C 0.121 3.879 21 N -0.328 5.328 22 C 0.226 3.774 23 N -0.329 5.329 24 N -0.033 5.033 25 N -0.066 5.066 26 C -0.040 4.040 27 H 0.273 0.727 28 H 0.098 0.902 29 H 0.082 0.918 30 H 0.425 0.575 31 H 0.144 0.856 32 H 0.150 0.850 33 H 0.142 0.858 34 H 0.241 0.759 35 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.478 -3.318 -3.327 27.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.115 4.115 3 Si 0.706 3.294 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.574 4.574 8 H 0.106 0.894 9 C -0.593 4.593 10 S 2.677 3.323 11 O -0.946 6.946 12 O -0.929 6.929 13 N -0.817 5.817 14 C 0.363 3.637 15 O -0.343 6.343 16 C -0.117 4.117 17 C -0.091 4.091 18 C -0.117 4.117 19 C -0.115 4.115 20 C 0.029 3.971 21 N -0.119 5.119 22 C -0.071 4.071 23 N -0.178 5.178 24 N -0.028 5.028 25 N -0.051 5.051 26 C -0.061 4.061 27 H 0.083 0.917 28 H 0.116 0.884 29 H 0.100 0.900 30 H 0.260 0.740 31 H 0.162 0.838 32 H 0.168 0.832 33 H 0.160 0.840 34 H 0.256 0.744 35 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 26.001 -3.196 -1.276 26.228 hybrid contribution 0.937 0.900 -1.415 1.921 sum 26.939 -2.296 -2.691 27.170 Atomic orbital electron populations 1.69855 1.06269 1.27943 1.47188 1.24843 0.94741 0.99132 0.92829 0.86750 0.80708 0.82979 0.78956 1.19565 1.20390 1.18576 1.20005 0.84604 0.96446 1.56313 0.89427 1.28098 1.08737 1.15975 1.06468 1.06448 0.71293 0.80246 0.74312 1.93552 1.80867 1.74987 1.45222 1.93566 1.80553 1.74099 1.44694 1.55553 1.31596 1.68355 1.26184 1.17951 0.87868 0.76200 0.81706 1.91035 1.66844 1.44226 1.32178 1.19821 0.93306 1.02884 0.95666 1.21620 0.94455 0.95834 0.97186 1.20998 0.94051 0.98619 0.98061 1.21096 1.00558 0.98052 0.91826 1.17392 0.91996 1.01619 0.86135 1.49105 1.06427 1.41477 1.14858 1.27452 0.86115 0.96122 0.97450 1.74509 1.19315 1.18776 1.05173 1.78145 0.92879 1.11594 1.20137 1.82830 1.18482 1.13871 0.89893 1.21131 0.91575 0.94529 0.98896 0.91713 0.88418 0.90035 0.73978 0.83821 0.83216 0.84015 0.74355 0.82196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.96 13.96 55.43 0.77 -25.18 16 2 C 0.09 2.58 5.47 -17.82 -0.10 2.48 16 3 Si 0.88 20.52 27.47 -169.99 -4.67 15.85 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.26 -5.83 6.54 56.52 0.37 -5.46 16 7 C -0.53 -14.84 9.68 -34.44 -0.33 -15.17 16 8 H 0.09 2.60 7.96 -52.49 -0.42 2.18 16 9 C -0.46 -10.20 4.71 36.01 0.17 -10.03 16 10 S 2.58 50.77 5.03 -107.50 -0.54 50.23 16 11 O -0.96 -19.95 18.08 -57.54 -1.04 -20.99 16 12 O -0.94 -21.96 17.04 -64.78 -1.10 -23.06 16 13 N -1.06 -14.12 5.55 30.53 0.17 -13.95 16 14 C 0.58 8.17 7.51 -12.32 -0.09 8.08 16 15 O -0.47 -8.78 14.45 -11.79 -0.17 -8.95 16 16 C -0.11 -1.09 5.87 -104.99 -0.62 -1.71 16 17 C -0.07 -0.41 9.54 -39.16 -0.37 -0.78 16 18 C -0.10 -0.32 10.02 -39.67 -0.40 -0.72 16 19 C -0.09 -0.35 9.48 -39.33 -0.37 -0.72 16 20 C 0.12 0.92 6.70 -83.61 -0.56 0.36 16 21 N -0.33 -2.90 3.85 -11.77 -0.05 -2.95 16 22 C 0.23 1.44 12.15 -90.15 -1.10 0.34 16 23 N -0.33 -3.42 12.15 29.64 0.36 -3.06 16 24 N -0.03 -0.42 13.39 60.35 0.81 0.39 16 25 N -0.07 -0.82 13.33 60.35 0.80 -0.02 16 26 C -0.04 -0.41 9.24 -39.00 -0.36 -0.77 16 27 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.10 2.18 6.25 -51.92 -0.32 1.85 16 29 H 0.08 1.59 7.57 -51.92 -0.39 1.19 16 30 H 0.42 3.56 6.82 -34.48 -0.24 3.32 16 31 H 0.14 0.44 6.40 -52.49 -0.34 0.10 16 32 H 0.15 0.01 8.06 -52.49 -0.42 -0.41 16 33 H 0.14 -0.01 6.87 -52.49 -0.36 -0.38 16 34 H 0.24 0.02 7.18 -52.49 -0.38 -0.36 16 35 H 0.16 1.94 7.36 -52.49 -0.39 1.56 16 LS Contribution 328.20 15.07 4.95 4.95 Total: -1.00 -40.06 328.20 -6.26 -46.31 By element: Atomic # 1 Polarization: 1.49 SS G_CDS: -2.42 Total: -0.93 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: -4.13 Total: -18.64 kcal Atomic # 7 Polarization: -47.65 SS G_CDS: 2.87 Total: -44.77 kcal Atomic # 8 Polarization: -50.69 SS G_CDS: -2.31 Total: -53.00 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.67 Total: 15.85 kcal Atomic # 16 Polarization: 50.77 SS G_CDS: -0.54 Total: 50.23 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -40.06 -6.26 -46.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821584037.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.359 kcal (2) G-P(sol) polarization free energy of solvation -40.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds