Wall clock time and date at job start Tue Mar 31 2020 20:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00405 * 2 1 4 4 H 1.48502 * 109.47219 * 269.99881 * 3 2 1 5 5 H 1.48507 * 109.46891 * 29.99447 * 3 2 1 6 6 H 1.48491 * 109.47285 * 149.99499 * 3 2 1 7 7 C 1.37873 * 119.99672 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00113 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00289 * 180.02562 * 7 2 1 10 10 S 1.81398 * 109.47345 * 180.02562 * 9 7 2 11 11 O 1.42095 * 110.54020 * 68.38101 * 10 9 7 12 12 O 1.42098 * 110.54577 * 291.62685 * 10 9 7 13 13 N 1.65606 * 104.44752 * 179.97438 * 10 9 7 14 14 C 1.34776 * 119.99548 * 65.00262 * 13 10 9 15 15 O 1.21550 * 120.00567 * 0.02562 * 14 13 10 16 16 C 1.47857 * 119.99755 * 179.97438 * 14 13 10 17 17 C 1.39619 * 120.11452 * 359.97438 * 16 14 13 18 18 C 1.37978 * 119.98604 * 180.02562 * 17 16 14 19 19 C 1.38262 * 120.21570 * 359.97438 * 18 17 16 20 20 C 1.38906 * 120.22757 * 359.76221 * 19 18 17 21 21 N 1.40286 * 119.99740 * 180.28212 * 20 19 18 22 22 C 1.35069 * 127.38648 * 0.23126 * 21 20 19 23 23 N 1.30739 * 107.27666 * 179.97438 * 22 21 20 24 24 N 1.28421 * 110.64449 * 359.97438 * 23 22 21 25 25 N 1.28951 * 110.20214 * 359.73181 * 24 23 22 26 26 C 1.38577 * 120.01313 * 0.51391 * 20 19 18 27 27 H 0.97000 * 119.99619 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47096 * 60.00360 * 9 7 2 29 29 H 1.09001 * 109.47160 * 300.00692 * 9 7 2 30 30 H 0.96996 * 120.00257 * 244.99951 * 13 10 9 31 31 H 1.07997 * 120.00760 * 0.04257 * 17 16 14 32 32 H 1.07999 * 119.89255 * 179.97438 * 18 17 16 33 33 H 1.07997 * 119.89067 * 180.02562 * 19 18 17 34 34 H 1.07999 * 126.36302 * 359.94692 * 22 21 20 35 35 H 1.08002 * 120.11160 * 179.74780 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 16 4.1160 -2.9045 0.0010 11 8 3.8204 -3.5377 -1.2363 12 8 3.8194 -3.5384 1.2376 13 7 5.7657 -2.7596 0.0009 14 6 6.3938 -2.2094 1.0589 15 8 5.7495 -1.8199 2.0132 16 6 7.8667 -2.0805 1.0591 17 6 8.6093 -2.5285 -0.0351 18 6 9.9837 -2.4074 -0.0318 19 6 10.6299 -1.8427 1.0523 20 6 9.8995 -1.3891 2.1432 21 7 10.5597 -0.8115 3.2381 22 6 11.8884 -0.6197 3.3865 23 7 12.0712 -0.0527 4.5503 24 7 10.9486 0.1274 5.1475 25 7 9.9796 -0.3019 4.4130 26 6 8.5192 -1.5112 2.1524 27 1 -0.4849 0.8401 -0.0004 28 1 3.8745 -0.6803 0.8912 29 1 3.8752 -0.6805 -0.8888 30 1 6.2799 -3.0707 -0.7604 31 1 8.1080 -2.9694 -0.8839 32 1 10.5567 -2.7548 -0.8788 33 1 11.7059 -1.7501 1.0491 34 1 12.6571 -0.8856 2.6761 35 1 7.9501 -1.1627 3.0016 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821584037.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:07:26 Heat of formation + Delta-G solvation = 18.367448 kcal Electronic energy + Delta-G solvation = -25709.074827 eV Core-core repulsion = 21643.652426 eV Total energy + Delta-G solvation = -4065.422402 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.068 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.33603 -41.76595 -40.00305 -38.20142 -37.14832 -36.43100 -35.65268 -35.38118 -33.53321 -32.41503 -31.86481 -31.28966 -26.26993 -26.22364 -25.16790 -24.18452 -23.12389 -22.26023 -20.95871 -20.37024 -19.61966 -18.52511 -18.21991 -17.77164 -17.65868 -17.54504 -17.00096 -16.58293 -16.41535 -16.28629 -16.05524 -15.83405 -14.96699 -14.77282 -14.52501 -14.39693 -14.35730 -13.79260 -13.70057 -13.66711 -13.29049 -13.19148 -13.02080 -12.70899 -12.68718 -12.68077 -12.39652 -12.16002 -12.15269 -11.93447 -11.69219 -11.61634 -11.31646 -10.97491 -10.32178 -9.89087 -8.50006 -6.66541 -0.91712 -0.82438 -0.46530 0.44974 0.67296 1.13246 1.26799 1.28075 1.32631 1.42391 1.51320 2.22448 2.50258 2.64258 2.79161 2.81887 3.11773 3.27944 3.30465 3.63591 3.69527 3.77315 3.86587 3.97315 4.16348 4.26688 4.31622 4.34125 4.44211 4.68852 4.93196 5.04972 5.11261 5.13390 5.22766 5.61024 5.67654 5.76470 6.29812 6.37420 7.02096 7.22799 8.65126 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.014651 B = 0.003162 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.695525 B = 8853.257052 C = 9947.404999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.029 3.971 3 Si 0.946 3.054 4 H -0.244 1.244 5 H -0.277 1.277 6 H -0.247 1.247 7 C -0.555 4.555 8 H 0.046 0.954 9 C -0.475 4.475 10 S 2.613 3.387 11 O -0.968 6.968 12 O -0.982 6.982 13 N -1.033 6.033 14 C 0.575 3.425 15 O -0.528 6.528 16 C -0.134 4.134 17 C -0.060 4.060 18 C -0.080 4.080 19 C -0.063 4.063 20 C 0.103 3.897 21 N -0.328 5.328 22 C 0.250 3.750 23 N -0.360 5.360 24 N -0.063 5.063 25 N -0.114 5.114 26 C -0.066 4.066 27 H 0.278 0.722 28 H 0.098 0.902 29 H 0.117 0.883 30 H 0.449 0.551 31 H 0.173 0.827 32 H 0.202 0.798 33 H 0.197 0.803 34 H 0.307 0.693 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.033 -3.340 -6.656 33.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.173 4.173 3 Si 0.766 3.234 4 H -0.167 1.167 5 H -0.202 1.202 6 H -0.171 1.171 7 C -0.594 4.594 8 H 0.064 0.936 9 C -0.609 4.609 10 S 2.712 3.288 11 O -0.958 6.958 12 O -0.972 6.972 13 N -0.800 5.800 14 C 0.364 3.636 15 O -0.403 6.403 16 C -0.140 4.140 17 C -0.079 4.079 18 C -0.098 4.098 19 C -0.083 4.083 20 C 0.012 3.988 21 N -0.119 5.119 22 C -0.045 4.045 23 N -0.209 5.209 24 N -0.058 5.058 25 N -0.099 5.099 26 C -0.088 4.088 27 H 0.087 0.913 28 H 0.116 0.884 29 H 0.135 0.865 30 H 0.291 0.709 31 H 0.190 0.810 32 H 0.219 0.781 33 H 0.214 0.786 34 H 0.322 0.678 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 31.559 -3.241 -4.658 32.065 hybrid contribution -0.641 0.763 -0.469 1.101 sum 30.918 -2.478 -5.127 31.438 Atomic orbital electron populations 1.69997 1.08304 1.29352 1.48849 1.25926 0.95675 1.03529 0.92149 0.85721 0.79622 0.77470 0.80538 1.16730 1.20197 1.17095 1.20281 0.87703 0.95199 1.56209 0.93559 1.28171 1.05417 1.19333 1.07958 1.04978 0.72386 0.78419 0.73019 1.93527 1.82223 1.74634 1.45411 1.93512 1.82442 1.74500 1.46784 1.54823 1.29381 1.68351 1.27427 1.18746 0.89911 0.74510 0.80422 1.91010 1.68340 1.46761 1.34198 1.19433 0.90166 1.06497 0.97877 1.22057 0.95844 0.94033 0.95998 1.21621 0.92876 0.96375 0.98934 1.21791 1.02966 0.94220 0.89323 1.17655 0.91165 1.02892 0.87109 1.49166 1.07304 1.41169 1.14231 1.28655 0.85964 0.93061 0.96781 1.74400 1.19000 1.20399 1.07121 1.78126 0.93748 1.12599 1.21290 1.82786 1.19568 1.15692 0.91856 1.20926 0.93195 0.96296 0.98350 0.91297 0.88418 0.86486 0.70902 0.80966 0.78104 0.78641 0.67825 0.86147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.19 13.96 21.45 0.30 -56.89 16 2 C 0.03 1.70 5.47 84.65 0.46 2.16 16 3 Si 0.95 42.29 27.47 68.60 1.88 44.18 16 4 H -0.24 -9.82 7.11 99.48 0.71 -9.11 16 5 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 6 H -0.25 -10.41 6.54 99.48 0.65 -9.76 16 7 C -0.56 -32.11 9.68 25.60 0.25 -31.86 16 8 H 0.05 2.95 7.96 -2.91 -0.02 2.93 16 9 C -0.47 -21.42 4.71 71.24 0.34 -21.08 16 10 S 2.61 104.35 5.03 -56.49 -0.28 104.06 16 11 O -0.97 -40.13 18.08 -127.65 -2.31 -42.43 16 12 O -0.98 -47.99 17.04 -120.72 -2.06 -50.04 16 13 N -1.03 -26.34 5.55 -175.60 -0.98 -27.32 16 14 C 0.57 16.27 7.51 86.79 0.65 16.92 16 15 O -0.53 -20.83 14.45 12.49 0.18 -20.65 16 16 C -0.13 -2.42 5.87 -20.10 -0.12 -2.54 16 17 C -0.06 -0.37 9.54 22.54 0.21 -0.16 16 18 C -0.08 0.09 10.02 22.21 0.22 0.31 16 19 C -0.06 -0.03 9.48 22.44 0.21 0.18 16 20 C 0.10 1.27 6.70 38.03 0.25 1.53 16 21 N -0.33 -5.19 3.85 -191.16 -0.74 -5.93 16 22 C 0.25 2.25 12.15 180.18 2.19 4.44 16 23 N -0.36 -7.00 12.15 -60.13 -0.73 -7.73 16 24 N -0.06 -1.66 13.39 37.02 0.50 -1.17 16 25 N -0.11 -2.97 13.33 37.02 0.49 -2.48 16 26 C -0.07 -1.34 9.24 22.65 0.21 -1.13 16 27 H 0.28 15.67 8.31 -92.71 -0.77 14.90 16 28 H 0.10 4.44 6.25 -2.39 -0.01 4.43 16 29 H 0.12 4.38 7.57 -2.39 -0.02 4.37 16 30 H 0.45 6.15 6.82 -96.75 -0.66 5.49 16 31 H 0.17 -0.01 6.40 -2.91 -0.02 -0.03 16 32 H 0.20 -2.02 8.06 -2.91 -0.02 -2.04 16 33 H 0.20 -1.98 6.87 -2.91 -0.02 -2.00 16 34 H 0.31 -2.23 7.18 -2.91 -0.02 -2.25 16 35 H 0.12 3.34 7.36 -2.91 -0.02 3.32 16 Total: -1.00 -100.52 328.20 1.62 -98.90 By element: Atomic # 1 Polarization: -1.74 SS G_CDS: 0.47 Total: -1.26 kcal Atomic # 6 Polarization: -36.12 SS G_CDS: 4.88 Total: -31.24 kcal Atomic # 7 Polarization: -100.35 SS G_CDS: -1.15 Total: -101.51 kcal Atomic # 8 Polarization: -108.95 SS G_CDS: -4.18 Total: -113.13 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 1.88 Total: 44.18 kcal Atomic # 16 Polarization: 104.35 SS G_CDS: -0.28 Total: 104.06 kcal Total: -100.52 1.62 -98.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821584037.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.265 kcal (2) G-P(sol) polarization free energy of solvation -100.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds