Wall clock time and date at job start Tue Mar 31 2020 19:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 119.99889 * 2 1 4 4 H 1.48500 * 109.47047 * 240.00515 * 3 2 1 5 5 H 1.48502 * 109.47028 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47232 * 119.99916 * 3 2 1 7 7 C 1.38811 * 120.00399 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99884 * 156.22865 * 7 2 1 9 9 N 1.36930 * 119.99496 * 336.50818 * 7 2 1 10 10 C 1.46496 * 120.00725 * 342.82259 * 9 7 2 11 11 C 1.50696 * 109.47251 * 96.09356 * 10 9 7 12 12 O 1.20829 * 120.00098 * 0.02562 * 11 10 9 13 13 O 1.34235 * 120.00131 * 180.02562 * 11 10 9 14 14 C 1.46503 * 119.99954 * 162.82904 * 9 7 2 15 15 C 1.50704 * 109.47627 * 89.99487 * 14 9 7 16 16 N 1.32402 * 118.52707 * 89.99778 * 15 14 9 17 17 C 1.32417 * 121.52377 * 180.02562 * 16 15 14 18 18 O 1.35276 * 120.88774 * 179.97438 * 17 16 15 19 19 C 1.41379 * 118.22215 * 359.97438 * 17 16 15 20 20 C 1.40035 * 122.10360 * 180.02562 * 19 17 16 21 21 C 1.36306 * 119.51164 * 180.02562 * 20 19 17 22 22 C 1.39381 * 120.89454 * 359.90964 * 21 20 19 23 23 Cl 1.73598 * 119.49577 * 180.02562 * 22 21 20 24 24 C 1.36424 * 121.00972 * 0.06664 * 22 21 20 25 25 C 1.40127 * 119.57924 * 359.97438 * 24 22 21 26 26 N 1.31153 * 118.52555 * 269.73872 * 15 14 9 27 27 H 0.96999 * 120.00037 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47571 * 216.10186 * 10 9 7 29 29 H 1.09006 * 109.46914 * 336.10027 * 10 9 7 30 30 H 0.96698 * 117.00009 * 180.02562 * 13 11 10 31 31 H 1.09001 * 109.47292 * 210.00041 * 14 9 7 32 32 H 1.09005 * 109.46976 * 329.99608 * 14 9 7 33 33 H 0.96703 * 114.00064 * 89.99629 * 18 17 16 34 34 H 1.07992 * 120.24329 * 359.97438 * 20 19 17 35 35 H 1.07995 * 119.55412 * 179.97438 * 21 20 19 36 36 H 1.08003 * 120.20468 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6965 -1.2126 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0216 -1.2415 -0.3776 9 7 1.4108 -2.3390 0.4717 10 6 0.2132 -2.2417 1.3098 11 6 -1.0148 -2.4100 0.4527 12 8 -0.9013 -2.5930 -0.7363 13 8 -2.2348 -2.3567 1.0100 14 6 1.9670 -3.6528 0.1389 15 6 2.9747 -4.0517 1.1861 16 7 2.5544 -4.7320 2.2413 17 6 3.3884 -5.1121 3.1971 18 8 2.9449 -5.8064 4.2701 19 6 4.7546 -4.7730 3.0662 20 6 5.7065 -5.1341 4.0276 21 6 7.0102 -4.7790 3.8482 22 6 7.4083 -4.0633 2.7204 23 17 9.0785 -3.6305 2.5282 24 6 6.5054 -3.6971 1.7655 25 6 5.1568 -4.0453 1.9189 26 7 4.2295 -3.7139 1.0087 27 1 -0.4850 0.8400 0.0004 28 1 0.2364 -3.0235 2.0689 29 1 0.1870 -1.2656 1.7942 30 1 -2.9924 -2.4705 0.4200 31 1 1.1645 -4.3898 0.1074 32 1 2.4546 -3.6049 -0.8349 33 1 2.9628 -6.7661 4.1525 34 1 5.4098 -5.6891 4.9052 35 1 7.7448 -5.0567 4.5895 36 1 6.8281 -3.1423 0.8968 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833066705.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:34 Heat of formation + Delta-G solvation = -34.904387 kcal Electronic energy + Delta-G solvation = -26400.812843 eV Core-core repulsion = 22298.743944 eV Total energy + Delta-G solvation = -4102.068899 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.066 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.41578 -38.75177 -38.33158 -37.79011 -36.58799 -35.61743 -34.38756 -33.18321 -31.90168 -31.07637 -30.26566 -27.86205 -26.51157 -24.53481 -23.61727 -22.44622 -21.95498 -20.15631 -18.91259 -18.60528 -17.93211 -16.88664 -16.67133 -16.34623 -15.61221 -15.52984 -15.16971 -15.05526 -14.47001 -14.29795 -14.14067 -13.61588 -13.44315 -13.41807 -12.97165 -12.80348 -12.60243 -12.01374 -11.77315 -11.52209 -11.42337 -11.28438 -11.03367 -10.91123 -10.77976 -10.65348 -10.51211 -10.24120 -10.04016 -9.97842 -9.26938 -9.15322 -9.09047 -8.62851 -8.40900 -7.20881 -5.98142 -3.31565 0.08062 0.56016 1.68841 1.78477 2.73279 3.23821 3.36292 3.41906 3.44351 3.85833 3.91873 4.15794 4.31032 4.37186 4.47850 4.54239 4.64594 4.87249 4.99601 5.24874 5.28833 5.36053 5.54950 5.65688 5.81416 5.90841 6.13967 6.22376 6.36406 6.41777 6.55655 6.88601 6.93220 7.09333 7.24278 7.71858 7.83986 8.08031 8.36405 8.95635 9.40406 9.62214 10.03022 11.12982 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.012354 B = 0.003867 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2265.996803 B = 7239.539881 C = 8922.180865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.007 3.993 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.263 4.263 8 H 0.087 0.913 9 N -0.549 5.549 10 C 0.187 3.813 11 C 0.481 3.519 12 O -0.513 6.513 13 O -0.543 6.543 14 C 0.206 3.794 15 C 0.355 3.645 16 N -0.528 5.528 17 C 0.399 3.601 18 O -0.470 6.470 19 C -0.189 4.189 20 C -0.049 4.049 21 C -0.131 4.131 22 C 0.002 3.998 23 Cl -0.062 7.062 24 C -0.091 4.091 25 C 0.187 3.813 26 N -0.491 5.491 27 H 0.259 0.741 28 H 0.060 0.940 29 H 0.110 0.890 30 H 0.382 0.618 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.407 0.593 34 H 0.144 0.856 35 H 0.139 0.861 36 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.808 -12.896 9.181 19.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.192 4.192 3 Si 0.739 3.261 4 H -0.206 1.206 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.391 4.391 8 H 0.105 0.895 9 N -0.267 5.267 10 C 0.058 3.942 11 C 0.320 3.680 12 O -0.398 6.398 13 O -0.353 6.353 14 C 0.076 3.924 15 C 0.084 3.916 16 N -0.252 5.252 17 C 0.197 3.803 18 O -0.278 6.278 19 C -0.196 4.196 20 C -0.069 4.069 21 C -0.150 4.150 22 C -0.027 4.027 23 Cl -0.034 7.034 24 C -0.111 4.111 25 C 0.058 3.942 26 N -0.207 5.207 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.128 0.872 30 H 0.238 0.762 31 H 0.090 0.910 32 H 0.106 0.894 33 H 0.267 0.733 34 H 0.162 0.838 35 H 0.157 0.843 36 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 10.535 -11.823 8.535 17.989 hybrid contribution 0.577 0.381 0.151 0.708 sum 11.112 -11.441 8.686 18.161 Atomic orbital electron populations 1.69905 1.05325 1.26194 1.52721 1.24856 0.95166 0.98618 1.00562 0.86248 0.78938 0.82675 0.78287 1.20640 1.21616 1.20997 1.19325 0.96570 0.84694 1.38497 0.89531 1.43783 1.25797 1.00861 1.56215 1.20213 0.81248 1.02673 0.90091 1.25010 0.83669 0.70174 0.89107 1.90513 1.86455 1.45558 1.17310 1.84616 1.17519 1.86364 1.46807 1.19709 0.92037 0.88680 0.92011 1.25126 0.90438 0.84459 0.91546 1.67939 1.39792 1.15247 1.02253 1.19662 0.86144 0.89655 0.84837 1.84653 1.87063 1.23411 1.32625 1.19638 0.94933 1.06212 0.98801 1.20780 0.91443 0.97191 0.97529 1.20741 0.96851 1.00185 0.97236 1.20671 0.85921 0.99691 0.96466 1.98388 1.15883 1.91753 1.97326 1.20613 0.89883 1.00751 0.99859 1.18795 0.93847 0.92277 0.89309 1.68832 1.02057 1.20126 1.29701 0.93106 0.92164 0.87250 0.76213 0.90994 0.89421 0.73340 0.83831 0.84330 0.83026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.35 9.38 55.49 0.52 -24.83 16 2 C 0.01 0.18 4.81 -17.43 -0.08 0.10 16 3 Si 0.91 21.76 29.62 -169.99 -5.03 16.73 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.26 -7.02 9.64 -15.06 -0.15 -7.16 16 8 H 0.09 2.31 7.93 -52.49 -0.42 1.90 16 9 N -0.55 -13.38 2.01 -175.98 -0.35 -13.73 16 10 C 0.19 4.41 5.49 -5.20 -0.03 4.38 16 11 C 0.48 11.52 6.54 36.00 0.24 11.75 16 12 O -0.51 -13.83 16.81 -18.75 -0.32 -14.15 16 13 O -0.54 -11.02 13.42 -39.27 -0.53 -11.54 16 14 C 0.21 4.30 6.03 -5.19 -0.03 4.27 16 15 C 0.35 6.79 7.21 -157.21 -1.13 5.65 16 16 N -0.53 -9.23 10.30 -10.41 -0.11 -9.34 16 17 C 0.40 5.73 7.89 -16.11 -0.13 5.61 16 18 O -0.47 -5.04 12.93 -17.52 -0.23 -5.27 16 19 C -0.19 -2.61 5.75 -106.71 -0.61 -3.22 16 20 C -0.05 -0.50 9.61 -39.60 -0.38 -0.88 16 21 C -0.13 -1.27 9.73 -39.85 -0.39 -1.65 16 22 C 0.00 0.03 6.28 -39.81 -0.25 -0.22 16 23 Cl -0.06 -0.63 28.91 -51.86 -1.50 -2.13 16 24 C -0.09 -1.24 9.75 -39.53 -0.39 -1.63 16 25 C 0.19 2.98 6.61 -84.85 -0.56 2.42 16 26 N -0.49 -9.23 10.32 -8.80 -0.09 -9.32 16 27 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 28 H 0.06 1.29 8.12 -51.93 -0.42 0.87 16 29 H 0.11 2.80 6.46 -51.93 -0.34 2.47 16 30 H 0.38 6.11 9.10 45.56 0.41 6.53 16 31 H 0.07 1.43 8.07 -51.93 -0.42 1.01 16 32 H 0.09 1.83 8.04 -51.93 -0.42 1.42 16 33 H 0.41 2.01 9.06 45.56 0.41 2.42 16 34 H 0.14 1.03 7.72 -52.49 -0.41 0.63 16 35 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 36 H 0.15 1.99 8.06 -52.48 -0.42 1.56 16 LS Contribution 339.29 15.07 5.11 5.11 Total: -1.00 -34.12 339.29 -7.98 -42.11 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -1.57 Total: 6.95 kcal Atomic # 6 Polarization: 23.31 SS G_CDS: -3.89 Total: 19.42 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: -0.03 Total: -57.22 kcal Atomic # 8 Polarization: -29.89 SS G_CDS: -1.07 Total: -30.96 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.50 Total: -2.13 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.12 -7.98 -42.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833066705.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.201 kcal (2) G-P(sol) polarization free energy of solvation -34.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds