Wall clock time and date at job start Tue Mar 31 2020 19:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 119.99889 * 2 1 4 4 H 1.48500 * 109.47047 * 240.00515 * 3 2 1 5 5 H 1.48502 * 109.47028 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47232 * 119.99916 * 3 2 1 7 7 C 1.38811 * 120.00399 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99884 * 156.22865 * 7 2 1 9 9 N 1.36930 * 119.99496 * 336.50818 * 7 2 1 10 10 C 1.46496 * 120.00725 * 342.82259 * 9 7 2 11 11 C 1.50696 * 109.47251 * 96.09356 * 10 9 7 12 12 O 1.20829 * 120.00098 * 0.02562 * 11 10 9 13 13 O 1.34235 * 120.00131 * 180.02562 * 11 10 9 14 14 C 1.46503 * 119.99954 * 162.82904 * 9 7 2 15 15 C 1.50704 * 109.47627 * 89.99487 * 14 9 7 16 16 N 1.32402 * 118.52707 * 89.99778 * 15 14 9 17 17 C 1.32417 * 121.52377 * 180.02562 * 16 15 14 18 18 O 1.35276 * 120.88774 * 179.97438 * 17 16 15 19 19 C 1.41379 * 118.22215 * 359.97438 * 17 16 15 20 20 C 1.40035 * 122.10360 * 180.02562 * 19 17 16 21 21 C 1.36306 * 119.51164 * 180.02562 * 20 19 17 22 22 C 1.39381 * 120.89454 * 359.90964 * 21 20 19 23 23 Cl 1.73598 * 119.49577 * 180.02562 * 22 21 20 24 24 C 1.36424 * 121.00972 * 0.06664 * 22 21 20 25 25 C 1.40127 * 119.57924 * 359.97438 * 24 22 21 26 26 N 1.31153 * 118.52555 * 269.73872 * 15 14 9 27 27 H 0.96999 * 120.00037 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47571 * 216.10186 * 10 9 7 29 29 H 1.09006 * 109.46914 * 336.10027 * 10 9 7 30 30 H 0.96698 * 117.00009 * 180.02562 * 13 11 10 31 31 H 1.09001 * 109.47292 * 210.00041 * 14 9 7 32 32 H 1.09005 * 109.46976 * 329.99608 * 14 9 7 33 33 H 0.96703 * 114.00064 * 89.99629 * 18 17 16 34 34 H 1.07992 * 120.24329 * 359.97438 * 20 19 17 35 35 H 1.07995 * 119.55412 * 179.97438 * 21 20 19 36 36 H 1.08003 * 120.20468 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6965 -1.2126 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0216 -1.2415 -0.3776 9 7 1.4108 -2.3390 0.4717 10 6 0.2132 -2.2417 1.3098 11 6 -1.0148 -2.4100 0.4527 12 8 -0.9013 -2.5930 -0.7363 13 8 -2.2348 -2.3567 1.0100 14 6 1.9670 -3.6528 0.1389 15 6 2.9747 -4.0517 1.1861 16 7 2.5544 -4.7320 2.2413 17 6 3.3884 -5.1121 3.1971 18 8 2.9449 -5.8064 4.2701 19 6 4.7546 -4.7730 3.0662 20 6 5.7065 -5.1341 4.0276 21 6 7.0102 -4.7790 3.8482 22 6 7.4083 -4.0633 2.7204 23 17 9.0785 -3.6305 2.5282 24 6 6.5054 -3.6971 1.7655 25 6 5.1568 -4.0453 1.9189 26 7 4.2295 -3.7139 1.0087 27 1 -0.4850 0.8400 0.0004 28 1 0.2364 -3.0235 2.0689 29 1 0.1870 -1.2656 1.7942 30 1 -2.9924 -2.4705 0.4200 31 1 1.1645 -4.3898 0.1074 32 1 2.4546 -3.6049 -0.8349 33 1 2.9628 -6.7661 4.1525 34 1 5.4098 -5.6891 4.9052 35 1 7.7448 -5.0567 4.5895 36 1 6.8281 -3.1423 0.8968 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833066705.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:33 Heat of formation + Delta-G solvation = -61.142724 kcal Electronic energy + Delta-G solvation = -26401.950623 eV Core-core repulsion = 22298.743944 eV Total energy + Delta-G solvation = -4103.206679 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.066 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.53644 -40.59110 -39.32152 -38.87726 -37.64828 -37.19386 -36.24273 -34.29706 -33.65745 -32.20112 -31.56685 -29.51927 -28.25676 -25.62778 -25.14166 -23.53401 -23.43719 -21.94272 -20.01870 -19.76538 -18.93108 -18.72913 -18.50563 -17.48422 -17.13831 -16.99301 -16.52133 -16.38324 -16.03559 -15.66612 -15.35297 -15.21267 -15.17534 -14.77649 -13.97388 -13.86205 -13.63179 -13.54914 -13.39158 -12.94855 -12.91399 -12.72994 -12.50134 -12.37235 -12.16065 -12.13218 -12.02438 -11.90770 -11.85150 -11.67030 -11.16130 -10.61996 -10.35831 -10.12166 -9.46827 -9.12541 -8.02023 -5.36331 -0.93577 -0.52200 0.66396 0.88482 1.44441 1.46551 1.53772 1.69992 1.97970 2.20812 2.42154 2.69019 2.85896 2.95490 3.23374 3.25045 3.47309 3.56988 3.78394 3.89970 4.05458 4.27653 4.46674 4.54072 4.61079 4.75742 4.81734 4.93633 5.00314 5.00786 5.16495 5.22844 5.39438 5.63002 5.95047 6.10998 6.14820 6.50692 6.94266 7.12224 7.54789 7.71751 8.06254 9.07423 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.012354 B = 0.003867 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2265.996803 B = 7239.539881 C = 8922.180865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.041 4.041 3 Si 0.967 3.033 4 H -0.279 1.279 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.262 4.262 8 H 0.077 0.923 9 N -0.564 5.564 10 C 0.193 3.807 11 C 0.486 3.514 12 O -0.549 6.549 13 O -0.532 6.532 14 C 0.212 3.788 15 C 0.344 3.656 16 N -0.555 5.555 17 C 0.412 3.588 18 O -0.463 6.463 19 C -0.194 4.194 20 C -0.035 4.035 21 C -0.119 4.119 22 C 0.014 3.986 23 Cl -0.048 7.048 24 C -0.115 4.115 25 C 0.159 3.841 26 N -0.523 5.523 27 H 0.252 0.748 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.404 0.596 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.434 0.566 34 H 0.184 0.816 35 H 0.178 0.822 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.668 -14.318 11.933 22.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.236 4.236 3 Si 0.795 3.205 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.392 4.392 8 H 0.095 0.905 9 N -0.283 5.283 10 C 0.064 3.936 11 C 0.327 3.673 12 O -0.438 6.438 13 O -0.344 6.344 14 C 0.083 3.917 15 C 0.073 3.927 16 N -0.281 5.281 17 C 0.211 3.789 18 O -0.275 6.275 19 C -0.200 4.200 20 C -0.055 4.055 21 C -0.137 4.137 22 C -0.016 4.016 23 Cl -0.019 7.019 24 C -0.135 4.135 25 C 0.032 3.968 26 N -0.239 5.239 27 H 0.062 0.938 28 H 0.098 0.902 29 H 0.106 0.894 30 H 0.262 0.738 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.299 0.701 34 H 0.201 0.799 35 H 0.195 0.805 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 12.424 -13.311 11.323 21.441 hybrid contribution 0.163 0.633 -0.559 0.860 sum 12.587 -12.678 10.764 20.858 Atomic orbital electron populations 1.70027 1.06226 1.26051 1.54483 1.25491 0.95885 1.01044 1.01222 0.85347 0.77654 0.79410 0.78072 1.20511 1.21764 1.20841 1.19437 0.96173 0.85873 1.37680 0.90475 1.43858 1.26449 1.01427 1.56609 1.20114 0.81188 1.02025 0.90298 1.25023 0.84644 0.69144 0.88488 1.90493 1.87180 1.47380 1.18713 1.84536 1.17343 1.85630 1.46893 1.19576 0.92412 0.87361 0.92375 1.24212 0.90257 0.86393 0.91861 1.67815 1.40801 1.16458 1.03033 1.19764 0.86057 0.88768 0.84354 1.84615 1.86755 1.25531 1.30605 1.19832 0.95504 1.05812 0.98871 1.21202 0.90674 0.96248 0.97402 1.21202 0.97506 0.98196 0.96781 1.20864 0.86182 0.98427 0.96144 1.98401 1.14600 1.91585 1.97313 1.20597 0.89665 1.02278 1.00923 1.19078 0.94108 0.93555 0.90077 1.68677 1.02484 1.21225 1.31531 0.93837 0.90195 0.89409 0.73758 0.90707 0.90766 0.70130 0.79869 0.80505 0.83773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.37 9.38 21.65 0.20 -53.16 16 2 C -0.04 -2.26 4.81 84.86 0.41 -1.86 16 3 Si 0.97 45.84 29.62 68.60 2.03 47.87 16 4 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 5 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 6 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 7 C -0.26 -14.52 9.64 84.03 0.81 -13.71 16 8 H 0.08 4.31 7.93 -2.91 -0.02 4.28 16 9 N -0.56 -28.48 2.01 -710.68 -1.43 -29.91 16 10 C 0.19 9.32 5.49 85.63 0.47 9.78 16 11 C 0.49 23.61 6.54 71.23 0.47 24.08 16 12 O -0.55 -30.29 16.81 21.96 0.37 -29.92 16 13 O -0.53 -21.35 13.42 -51.46 -0.69 -22.04 16 14 C 0.21 9.25 6.03 85.63 0.52 9.77 16 15 C 0.34 13.55 7.21 138.76 1.00 14.55 16 16 N -0.55 -19.32 10.30 -299.86 -3.09 -22.41 16 17 C 0.41 11.06 7.89 85.38 0.67 11.74 16 18 O -0.46 -8.33 12.93 -85.61 -1.11 -9.44 16 19 C -0.19 -4.93 5.75 -21.22 -0.12 -5.05 16 20 C -0.04 -0.56 9.61 22.26 0.21 -0.34 16 21 C -0.12 -1.75 9.73 22.09 0.21 -1.53 16 22 C 0.01 0.28 6.28 22.12 0.14 0.42 16 23 Cl -0.05 -0.85 28.91 -2.72 -0.08 -0.93 16 24 C -0.11 -3.06 9.75 22.30 0.22 -2.85 16 25 C 0.16 5.05 6.61 40.11 0.27 5.31 16 26 N -0.52 -20.33 10.32 -181.76 -1.88 -22.20 16 27 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 28 H 0.08 3.47 8.12 -2.39 -0.02 3.45 16 29 H 0.09 4.63 6.46 -2.38 -0.02 4.61 16 30 H 0.40 12.53 9.10 -74.06 -0.67 11.85 16 31 H 0.07 3.12 8.07 -2.39 -0.02 3.10 16 32 H 0.07 3.33 8.04 -2.38 -0.02 3.31 16 33 H 0.43 2.54 9.06 -74.06 -0.67 1.87 16 34 H 0.18 1.48 7.72 -2.91 -0.02 1.46 16 35 H 0.18 1.34 8.06 -2.91 -0.02 1.32 16 36 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 Total: -1.00 -76.41 339.29 -0.56 -76.96 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -0.16 Total: 14.88 kcal Atomic # 6 Polarization: 45.03 SS G_CDS: 5.27 Total: 50.30 kcal Atomic # 7 Polarization: -121.49 SS G_CDS: -6.19 Total: -127.68 kcal Atomic # 8 Polarization: -59.98 SS G_CDS: -1.43 Total: -61.41 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -0.08 Total: -0.93 kcal Total: -76.41 -0.56 -76.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833066705.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.822 kcal (2) G-P(sol) polarization free energy of solvation -76.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds