Wall clock time and date at job start Tue Mar 31 2020 20:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13610 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39717 * 120.18986 * 312.51934 * 3 2 1 5 5 C 1.37783 * 119.93258 * 179.97438 * 4 3 2 6 6 C 1.38685 * 120.30793 * 359.97438 * 5 4 3 7 7 Cl 1.73598 * 119.80764 * 180.02562 * 6 5 4 8 8 C 1.38213 * 120.38023 * 359.76615 * 6 5 4 9 9 C 1.38735 * 120.06451 * 0.51158 * 8 6 5 10 10 N 1.39401 * 120.15689 * 179.74442 * 9 8 6 11 11 C 1.34774 * 119.99917 * 26.88055 * 10 9 8 12 12 O 1.21279 * 120.00223 * 356.30471 * 11 10 9 13 13 C 1.50704 * 119.99797 * 176.30293 * 11 10 9 14 14 N 1.46499 * 109.46871 * 179.97438 * 13 11 10 15 15 C 1.36931 * 120.00254 * 270.00043 * 14 13 11 16 16 H 1.07999 * 119.99953 * 149.98067 * 15 14 13 17 17 C 1.38816 * 120.00067 * 329.98215 * 15 14 13 18 18 N 1.31621 * 120.00073 * 155.22950 * 17 15 14 19 19 Si 1.86796 * 119.99895 * 335.23094 * 17 15 14 20 20 H 1.48493 * 109.47286 * 95.24409 * 19 17 15 21 21 H 1.48507 * 109.46979 * 215.24694 * 19 17 15 22 22 H 1.48503 * 109.47391 * 335.24299 * 19 17 15 23 23 C 1.46500 * 119.99763 * 90.00563 * 14 13 11 24 24 C 1.50700 * 109.47187 * 95.40493 * 23 14 13 25 25 O 1.20817 * 120.00360 * 4.19001 * 24 23 14 26 26 O 1.34232 * 119.99496 * 184.18802 * 24 23 14 27 27 H 1.08003 * 120.03495 * 359.97438 * 4 3 2 28 28 H 1.07994 * 119.85030 * 179.97438 * 5 4 3 29 29 H 1.08001 * 119.96669 * 180.28003 * 8 6 5 30 30 H 0.97005 * 120.00045 * 206.87895 * 10 9 8 31 31 H 1.09000 * 109.47495 * 300.00421 * 13 11 10 32 32 H 1.09003 * 109.47377 * 60.00495 * 13 11 10 33 33 H 0.96999 * 120.00054 * 179.97438 * 18 17 15 34 34 H 1.09007 * 109.47053 * 215.40488 * 23 14 13 35 35 H 1.08999 * 109.47518 * 335.40077 * 23 14 13 36 36 H 0.96708 * 116.99468 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2710 -0.8152 0.8901 5 6 4.6488 -0.8108 0.8852 6 6 5.3429 0.0000 -0.0003 7 17 7.0789 -0.0052 0.0042 8 6 4.6606 0.8081 -0.8900 9 6 3.2733 0.8203 -0.8946 10 7 2.5831 1.6386 -1.7875 11 6 3.1517 1.9888 -2.9581 12 8 4.2889 1.6479 -3.2059 13 6 2.3743 2.8040 -3.9593 14 7 3.2069 3.0517 -5.1390 15 6 4.0026 4.1648 -5.1940 16 1 4.9261 4.1412 -5.7535 17 6 3.6223 5.3234 -4.5307 18 7 4.5328 6.1983 -4.1596 19 14 1.8182 5.6407 -4.1649 20 1 1.5034 5.1790 -2.7891 21 1 1.5392 7.0952 -4.2751 22 1 0.9776 4.9003 -5.1399 23 6 3.1880 2.1086 -6.2599 24 6 2.2124 2.5882 -7.3036 25 8 1.6526 3.6498 -7.1648 26 8 1.9655 1.8358 -8.3874 27 1 2.7350 -1.4487 1.5813 28 1 5.1908 -1.4417 1.5740 29 1 5.2078 1.4335 -1.5797 30 1 1.6935 1.9560 -1.5662 31 1 1.4781 2.2585 -4.2546 32 1 2.0891 3.7554 -3.5102 33 1 4.2670 7.0080 -3.6964 34 1 4.1846 2.0435 -6.6968 35 1 2.8833 1.1251 -5.9023 36 1 1.3318 2.1850 -9.0291 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833067020.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:08 Heat of formation + Delta-G solvation = -25.677743 kcal Electronic energy + Delta-G solvation = -26214.834414 eV Core-core repulsion = 22113.165612 eV Total energy + Delta-G solvation = -4101.668802 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.066 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.75292 -39.49831 -38.71935 -36.98906 -36.32105 -35.98979 -35.10939 -34.59948 -31.85761 -31.31056 -30.50212 -28.64990 -26.75594 -24.06043 -23.60209 -22.70347 -20.77837 -20.14774 -19.34655 -17.95416 -17.51439 -17.18196 -16.87899 -16.04337 -15.79277 -15.62605 -15.42794 -15.04388 -14.61665 -14.41293 -14.09074 -13.98804 -13.62957 -13.56880 -13.22960 -13.13913 -12.75864 -12.63616 -12.36233 -12.24781 -12.05044 -11.80158 -11.57088 -11.21657 -11.09864 -10.85737 -10.56458 -10.51083 -10.31407 -10.12780 -9.65509 -9.36968 -8.98530 -8.71386 -8.31971 -7.40305 -6.16231 -3.56220 0.38670 1.03686 1.92990 2.41350 2.63493 2.89220 2.92044 2.96035 3.09561 3.39380 3.54620 3.60217 3.65340 3.68909 4.35652 4.49918 4.58468 4.83779 4.90844 4.98683 5.13364 5.27368 5.54725 5.57276 5.71026 5.71997 5.78332 5.89987 6.00063 6.02736 6.17491 6.19053 6.67481 7.09563 7.20348 7.32303 7.61739 8.08406 8.32756 8.57510 8.69811 9.45998 9.68334 10.97496 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.011248 B = 0.003826 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.748236 B = 7315.890341 C = 7749.702052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C 0.256 3.744 3 C -0.077 4.077 4 C -0.036 4.036 5 C -0.144 4.144 6 C 0.017 3.983 7 Cl -0.056 7.056 8 C -0.132 4.132 9 C 0.228 3.772 10 N -0.682 5.682 11 C 0.489 3.511 12 O -0.479 6.479 13 C 0.117 3.883 14 N -0.547 5.547 15 C -0.269 4.269 16 H 0.092 0.908 17 C 0.042 3.958 18 N -0.883 5.883 19 Si 0.856 3.144 20 H -0.290 1.290 21 H -0.296 1.296 22 H -0.241 1.241 23 C 0.160 3.840 24 C 0.432 3.568 25 O -0.495 6.495 26 O -0.537 6.537 27 H 0.143 0.857 28 H 0.142 0.858 29 H 0.178 0.822 30 H 0.410 0.590 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.266 0.734 34 H 0.102 0.898 35 H 0.086 0.914 36 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.563 -14.797 7.861 16.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.091 5.091 2 C -0.059 4.059 3 C -0.084 4.084 4 C -0.057 4.057 5 C -0.164 4.164 6 C -0.012 4.012 7 Cl -0.026 7.026 8 C -0.153 4.153 9 C 0.127 3.873 10 N -0.326 5.326 11 C 0.276 3.724 12 O -0.349 6.349 13 C -0.013 4.013 14 N -0.265 5.265 15 C -0.397 4.397 16 H 0.110 0.890 17 C -0.160 4.160 18 N -0.522 5.522 19 Si 0.685 3.315 20 H -0.219 1.219 21 H -0.224 1.224 22 H -0.164 1.164 23 C 0.030 3.970 24 C 0.270 3.730 25 O -0.380 6.380 26 O -0.348 6.348 27 H 0.160 0.840 28 H 0.160 0.840 29 H 0.195 0.805 30 H 0.246 0.754 31 H 0.099 0.901 32 H 0.109 0.891 33 H 0.076 0.924 34 H 0.119 0.881 35 H 0.104 0.896 36 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -2.156 -14.606 7.890 16.740 hybrid contribution -1.362 0.899 0.018 1.632 sum -3.517 -13.707 7.907 16.210 Atomic orbital electron populations 1.81290 1.11722 1.07948 1.08149 1.25492 0.92407 0.94107 0.93859 1.15833 0.84501 1.03817 1.04275 1.20834 0.93235 0.95720 0.95943 1.20867 0.93509 1.01341 1.00646 1.21044 0.85454 0.97796 0.96861 1.98399 1.08911 1.97541 1.97781 1.21630 0.92247 1.01285 1.00151 1.17682 0.90994 0.89831 0.88819 1.44208 1.20724 1.49386 1.18331 1.23288 0.88839 0.79221 0.81101 1.90585 1.17138 1.50917 1.76288 1.21407 0.93153 0.98741 0.88037 1.43588 1.49084 1.25282 1.08516 1.18748 1.00048 0.87362 1.33494 0.89032 1.25279 0.97006 0.95701 0.98058 1.69872 1.32563 1.11768 1.38026 0.87350 0.88940 0.77889 0.77288 1.21949 1.22413 1.16394 1.20783 0.96976 0.93493 0.85699 1.26272 0.82287 0.83080 0.81369 1.90716 1.48320 1.22740 1.76177 1.84673 1.62455 1.53728 1.33950 0.83954 0.84030 0.80506 0.75371 0.90099 0.89140 0.92372 0.88063 0.89595 0.75217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.62 18.54 41.84 0.78 -4.84 16 2 C 0.26 3.01 14.29 -22.47 -0.32 2.69 16 3 C -0.08 -0.83 5.75 -106.63 -0.61 -1.45 16 4 C -0.04 -0.30 9.75 -39.20 -0.38 -0.68 16 5 C -0.14 -1.24 9.80 -39.58 -0.39 -1.63 16 6 C 0.02 0.19 6.32 -39.43 -0.25 -0.06 16 7 Cl -0.06 -0.63 28.94 -51.86 -1.50 -2.13 16 8 C -0.13 -1.85 8.53 -39.41 -0.34 -2.18 16 9 C 0.23 3.02 6.44 -83.44 -0.54 2.48 16 10 N -0.68 -9.86 5.12 -9.67 -0.05 -9.91 16 11 C 0.49 8.76 7.78 -10.98 -0.09 8.67 16 12 O -0.48 -9.71 13.41 5.56 0.07 -9.63 16 13 C 0.12 2.26 5.01 -5.19 -0.03 2.23 16 14 N -0.55 -11.95 1.26 -175.98 -0.22 -12.17 16 15 C -0.27 -7.09 9.77 -15.06 -0.15 -7.24 16 16 H 0.09 2.62 8.06 -52.49 -0.42 2.19 16 17 C 0.04 1.15 5.31 -17.43 -0.09 1.06 16 18 N -0.88 -25.96 13.97 55.49 0.78 -25.19 16 19 Si 0.86 20.89 24.87 -169.99 -4.23 16.67 16 20 H -0.29 -6.53 6.65 56.52 0.38 -6.15 16 21 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 22 H -0.24 -5.91 6.06 56.52 0.34 -5.57 16 23 C 0.16 2.88 6.27 -5.19 -0.03 2.85 16 24 C 0.43 7.90 8.37 36.01 0.30 8.20 16 25 O -0.49 -11.11 15.98 -18.74 -0.30 -11.40 16 26 O -0.54 -7.69 13.42 -39.26 -0.53 -8.21 16 27 H 0.14 0.77 8.06 -52.48 -0.42 0.35 16 28 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 29 H 0.18 3.01 5.62 -52.49 -0.29 2.71 16 30 H 0.41 5.18 7.96 -40.82 -0.32 4.86 16 31 H 0.08 1.30 8.07 -51.93 -0.42 0.88 16 32 H 0.09 1.93 2.45 -51.93 -0.13 1.80 16 33 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.10 1.76 8.08 -51.93 -0.42 1.34 16 35 H 0.09 1.29 8.03 -51.93 -0.42 0.88 16 36 H 0.39 4.04 9.10 45.56 0.41 4.45 16 LS Contribution 340.52 15.07 5.13 5.13 Total: -1.00 -33.55 340.52 -5.06 -38.60 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -2.08 Total: 8.15 kcal Atomic # 6 Polarization: 17.86 SS G_CDS: -2.91 Total: 14.95 kcal Atomic # 7 Polarization: -53.39 SS G_CDS: 1.28 Total: -52.11 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: -0.75 Total: -29.25 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.23 Total: 16.67 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.50 Total: -2.13 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.55 -5.06 -38.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833067020.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.924 kcal (2) G-P(sol) polarization free energy of solvation -33.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds