Wall clock time and date at job start Tue Mar 31 2020 20:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13610 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39717 * 120.18986 * 312.51934 * 3 2 1 5 5 C 1.37783 * 119.93258 * 179.97438 * 4 3 2 6 6 C 1.38685 * 120.30793 * 359.97438 * 5 4 3 7 7 Cl 1.73598 * 119.80764 * 180.02562 * 6 5 4 8 8 C 1.38213 * 120.38023 * 359.76615 * 6 5 4 9 9 C 1.38735 * 120.06451 * 0.51158 * 8 6 5 10 10 N 1.39401 * 120.15689 * 179.74442 * 9 8 6 11 11 C 1.34774 * 119.99917 * 26.88055 * 10 9 8 12 12 O 1.21279 * 120.00223 * 356.30471 * 11 10 9 13 13 C 1.50704 * 119.99797 * 176.30293 * 11 10 9 14 14 N 1.46499 * 109.46871 * 179.97438 * 13 11 10 15 15 C 1.36931 * 120.00254 * 270.00043 * 14 13 11 16 16 H 1.07999 * 119.99953 * 149.98067 * 15 14 13 17 17 C 1.38816 * 120.00067 * 329.98215 * 15 14 13 18 18 N 1.31621 * 120.00073 * 155.22950 * 17 15 14 19 19 Si 1.86796 * 119.99895 * 335.23094 * 17 15 14 20 20 H 1.48493 * 109.47286 * 95.24409 * 19 17 15 21 21 H 1.48507 * 109.46979 * 215.24694 * 19 17 15 22 22 H 1.48503 * 109.47391 * 335.24299 * 19 17 15 23 23 C 1.46500 * 119.99763 * 90.00563 * 14 13 11 24 24 C 1.50700 * 109.47187 * 95.40493 * 23 14 13 25 25 O 1.20817 * 120.00360 * 4.19001 * 24 23 14 26 26 O 1.34232 * 119.99496 * 184.18802 * 24 23 14 27 27 H 1.08003 * 120.03495 * 359.97438 * 4 3 2 28 28 H 1.07994 * 119.85030 * 179.97438 * 5 4 3 29 29 H 1.08001 * 119.96669 * 180.28003 * 8 6 5 30 30 H 0.97005 * 120.00045 * 206.87895 * 10 9 8 31 31 H 1.09000 * 109.47495 * 300.00421 * 13 11 10 32 32 H 1.09003 * 109.47377 * 60.00495 * 13 11 10 33 33 H 0.96999 * 120.00054 * 179.97438 * 18 17 15 34 34 H 1.09007 * 109.47053 * 215.40488 * 23 14 13 35 35 H 1.08999 * 109.47518 * 335.40077 * 23 14 13 36 36 H 0.96708 * 116.99468 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2710 -0.8152 0.8901 5 6 4.6488 -0.8108 0.8852 6 6 5.3429 0.0000 -0.0003 7 17 7.0789 -0.0052 0.0042 8 6 4.6606 0.8081 -0.8900 9 6 3.2733 0.8203 -0.8946 10 7 2.5831 1.6386 -1.7875 11 6 3.1517 1.9888 -2.9581 12 8 4.2889 1.6479 -3.2059 13 6 2.3743 2.8040 -3.9593 14 7 3.2069 3.0517 -5.1390 15 6 4.0026 4.1648 -5.1940 16 1 4.9261 4.1412 -5.7535 17 6 3.6223 5.3234 -4.5307 18 7 4.5328 6.1983 -4.1596 19 14 1.8182 5.6407 -4.1649 20 1 1.5034 5.1790 -2.7891 21 1 1.5392 7.0952 -4.2751 22 1 0.9776 4.9003 -5.1399 23 6 3.1880 2.1086 -6.2599 24 6 2.2124 2.5882 -7.3036 25 8 1.6526 3.6498 -7.1648 26 8 1.9655 1.8358 -8.3874 27 1 2.7350 -1.4487 1.5813 28 1 5.1908 -1.4417 1.5740 29 1 5.2078 1.4335 -1.5797 30 1 1.6935 1.9560 -1.5662 31 1 1.4781 2.2585 -4.2546 32 1 2.0891 3.7554 -3.5102 33 1 4.2670 7.0080 -3.6964 34 1 4.1846 2.0435 -6.6968 35 1 2.8833 1.1251 -5.9023 36 1 1.3318 2.1850 -9.0291 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833067020.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:07 Heat of formation + Delta-G solvation = -49.518090 kcal Electronic energy + Delta-G solvation = -26215.868209 eV Core-core repulsion = 22113.165612 eV Total energy + Delta-G solvation = -4102.702597 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.066 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.90101 -40.93281 -39.88078 -37.92627 -37.61375 -37.15371 -36.58090 -35.82868 -33.84643 -32.21520 -31.63673 -30.01435 -28.45836 -25.08513 -24.93638 -24.03731 -22.07641 -21.61464 -20.38250 -19.27831 -18.87955 -18.46119 -18.43563 -17.59949 -17.11053 -16.77322 -16.54299 -16.49917 -15.99714 -15.72542 -15.29875 -15.20570 -14.93765 -14.57874 -14.42359 -14.39594 -14.13113 -14.08981 -13.91995 -13.37829 -13.13356 -12.98533 -12.80656 -12.58565 -12.53142 -12.25246 -12.13391 -12.00887 -11.86667 -11.52739 -11.35346 -10.89936 -10.61354 -9.90018 -9.31535 -9.20393 -8.25151 -5.61422 -0.51038 0.15600 1.04624 1.15407 1.38154 1.48512 1.49651 1.54340 1.62803 1.74490 1.78645 2.35089 2.36032 2.69478 2.73815 2.92252 3.23949 3.64012 3.79261 4.05560 4.08827 4.13468 4.18771 4.24451 4.36311 4.64460 4.69513 4.76838 4.83453 5.04830 5.19960 5.23828 5.65834 5.71105 5.83633 6.04698 6.14063 6.35166 6.68206 7.03910 7.26453 7.46937 7.74699 8.93221 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.011248 B = 0.003826 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2488.748236 B = 7315.890341 C = 7749.702052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C 0.275 3.725 3 C -0.068 4.068 4 C -0.014 4.014 5 C -0.124 4.124 6 C 0.012 3.988 7 Cl -0.060 7.060 8 C -0.154 4.154 9 C 0.208 3.792 10 N -0.673 5.673 11 C 0.494 3.506 12 O -0.510 6.510 13 C 0.112 3.888 14 N -0.564 5.564 15 C -0.248 4.248 16 H 0.054 0.946 17 C -0.016 4.016 18 N -0.938 5.938 19 Si 0.917 3.083 20 H -0.263 1.263 21 H -0.316 1.316 22 H -0.239 1.239 23 C 0.155 3.845 24 C 0.445 3.555 25 O -0.540 6.540 26 O -0.519 6.519 27 H 0.185 0.815 28 H 0.178 0.822 29 H 0.141 0.859 30 H 0.419 0.581 31 H 0.118 0.882 32 H 0.073 0.927 33 H 0.263 0.737 34 H 0.103 0.897 35 H 0.123 0.877 36 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.360 -18.122 9.540 20.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.119 5.119 2 C -0.039 4.039 3 C -0.075 4.075 4 C -0.035 4.035 5 C -0.143 4.143 6 C -0.016 4.016 7 Cl -0.031 7.031 8 C -0.175 4.175 9 C 0.108 3.892 10 N -0.319 5.319 11 C 0.281 3.719 12 O -0.383 6.383 13 C -0.018 4.018 14 N -0.282 5.282 15 C -0.378 4.378 16 H 0.072 0.928 17 C -0.213 4.213 18 N -0.581 5.581 19 Si 0.746 3.254 20 H -0.190 1.190 21 H -0.245 1.245 22 H -0.162 1.162 23 C 0.027 3.973 24 C 0.286 3.714 25 O -0.428 6.428 26 O -0.332 6.332 27 H 0.202 0.798 28 H 0.195 0.805 29 H 0.158 0.842 30 H 0.257 0.743 31 H 0.135 0.865 32 H 0.090 0.910 33 H 0.072 0.928 34 H 0.121 0.879 35 H 0.140 0.860 36 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -3.999 -18.016 9.581 20.793 hybrid contribution -0.722 1.695 -0.540 1.920 sum -4.720 -16.321 9.041 19.246 Atomic orbital electron populations 1.81327 1.12571 1.08923 1.09116 1.25462 0.92257 0.93218 0.92970 1.15854 0.83973 1.03632 1.04015 1.21317 0.93035 0.94314 0.94831 1.21270 0.93720 0.99878 0.99424 1.21181 0.85336 0.98029 0.97096 1.98400 1.09377 1.97553 1.97789 1.21307 0.92714 1.02410 1.01064 1.17684 0.90788 0.90914 0.89805 1.43800 1.20973 1.49467 1.17627 1.22706 0.88119 0.79141 0.81956 1.90601 1.18143 1.52409 1.77173 1.21450 0.94131 0.98621 0.87587 1.43520 1.49248 1.24537 1.10930 1.18554 0.99149 0.88813 1.31273 0.92842 1.25829 1.00424 0.95841 0.99172 1.70003 1.34361 1.12759 1.40969 0.86351 0.84215 0.76221 0.78598 1.19029 1.24544 1.16234 1.20860 0.97318 0.93963 0.85122 1.25861 0.81377 0.82233 0.81952 1.90713 1.50143 1.24615 1.77361 1.84570 1.62853 1.52490 1.33247 0.79788 0.80481 0.84175 0.74325 0.86464 0.90985 0.92801 0.87926 0.85970 0.72526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -10.82 18.54 19.00 0.35 -10.46 16 2 C 0.28 5.62 14.29 88.33 1.26 6.88 16 3 C -0.07 -1.25 5.75 -21.17 -0.12 -1.37 16 4 C -0.01 -0.17 9.75 22.52 0.22 0.05 16 5 C -0.12 -1.60 9.80 22.27 0.22 -1.38 16 6 C 0.01 0.25 6.32 22.37 0.14 0.39 16 7 Cl -0.06 -1.32 28.94 -2.72 -0.08 -1.40 16 8 C -0.15 -4.24 8.53 22.38 0.19 -4.05 16 9 C 0.21 5.21 6.44 38.57 0.25 5.46 16 10 N -0.67 -18.78 5.12 -302.89 -1.55 -20.33 16 11 C 0.49 17.57 7.78 87.66 0.68 18.25 16 12 O -0.51 -21.16 13.41 -3.03 -0.04 -21.20 16 13 C 0.11 4.20 5.01 85.63 0.43 4.63 16 14 N -0.56 -24.64 1.26 -710.67 -0.90 -25.54 16 15 C -0.25 -13.61 9.77 84.04 0.82 -12.79 16 16 H 0.05 3.26 8.06 -2.91 -0.02 3.23 16 17 C -0.02 -0.90 5.31 84.86 0.45 -0.45 16 18 N -0.94 -58.02 13.97 21.65 0.30 -57.72 16 19 Si 0.92 44.52 24.87 68.60 1.71 46.22 16 20 H -0.26 -11.32 6.65 99.48 0.66 -10.66 16 21 H -0.32 -16.16 7.11 99.48 0.71 -15.46 16 22 H -0.24 -11.45 6.06 99.48 0.60 -10.85 16 23 C 0.16 5.42 6.27 85.63 0.54 5.96 16 24 C 0.45 15.55 8.37 71.24 0.60 16.15 16 25 O -0.54 -23.73 15.98 21.99 0.35 -23.38 16 26 O -0.52 -13.37 13.42 -51.44 -0.69 -14.06 16 27 H 0.18 0.75 8.06 -2.91 -0.02 0.73 16 28 H 0.18 1.14 8.06 -2.91 -0.02 1.12 16 29 H 0.14 5.02 5.62 -2.91 -0.02 5.00 16 30 H 0.42 9.92 7.96 -92.70 -0.74 9.18 16 31 H 0.12 3.48 8.07 -2.39 -0.02 3.46 16 32 H 0.07 3.00 2.45 -2.39 -0.01 3.00 16 33 H 0.26 15.51 8.31 -92.71 -0.77 14.73 16 34 H 0.10 3.55 8.08 -2.38 -0.02 3.53 16 35 H 0.12 3.37 8.03 -2.39 -0.02 3.35 16 36 H 0.41 7.26 9.10 -74.05 -0.67 6.59 16 Total: -1.00 -77.96 340.52 4.76 -73.20 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -0.36 Total: 16.96 kcal Atomic # 6 Polarization: 32.05 SS G_CDS: 5.67 Total: 37.72 kcal Atomic # 7 Polarization: -112.27 SS G_CDS: -1.79 Total: -114.06 kcal Atomic # 8 Polarization: -58.26 SS G_CDS: -0.38 Total: -58.64 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.71 Total: 46.22 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -0.08 Total: -1.40 kcal Total: -77.96 4.76 -73.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833067020.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.682 kcal (2) G-P(sol) polarization free energy of solvation -77.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds